RNA–Protein interactions for RNA: ENST00000584888.1

ERBB2-221, Transcript of erb-b2 receptor tyrosine kinase 2, humanhuman

TSL 3

Gene ERBB2, Length 500 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERBB2-221ENST00000584888 NISCHQ9Y2I1 1504 aa44.07■■■■■ 4.65
ERBB2-221ENST00000584888 CCDC180Q9P1Z9 1646 aa39.4■■■■□ 3.9
ERBB2-221ENST00000584888 ABCC9O60706 1549 aa39.34■■■■□ 3.89
ERBB2-221ENST00000584888 RB1CC1Q8TDY2 1594 aa37.47■■■■□ 3.59
ERBB2-221ENST00000584888 NACADO15069 1562 aa37.27■■■■□ 3.56
ERBB2-221ENST00000584888 DCAF8L2P0C7V8 631 aa37.22■■■■□ 3.55
ERBB2-221ENST00000584888 DNAJC5BQ9UF47 199 aa36.83■■■■□ 3.49
ERBB2-221ENST00000584888 MYO15BQ96JP2 1530 aa36.8■■■■□ 3.48
ERBB2-221ENST00000584888 PABPN1Q86U42 306 aaKnown RBP eCLIP36.71■■■■□ 3.47
ERBB2-221ENST00000584888 UNC13AQ9UPW8 1703 aa36.56■■■■□ 3.44
ERBB2-221ENST00000584888 ZCCHC6Q5VYS8 1495 aaKnown RBP36.54■■■■□ 3.44
ERBB2-221ENST00000584888 DCAF1Q9Y4B6 1507 aa36.39■■■■□ 3.42
ERBB2-221ENST00000584888 BICRAQ9NZM4 1560 aa36.38■■■■□ 3.41
ERBB2-221ENST00000584888 SCRIBQ14160 1630 aa35.95■■■■□ 3.35
ERBB2-221ENST00000584888 SHROOM4Q9ULL8 1493 aa35.89■■■■□ 3.34
ERBB2-221ENST00000584888 CC2D2AQ9P2K1 1620 aa35.51■■■■□ 3.28
ERBB2-221ENST00000584888 EIF4G1Q04637 1599 aaKnown RBP35.47■■■■□ 3.27
ERBB2-221ENST00000584888 CECR2Q9BXF3 1484 aa35.41■■■■□ 3.26
ERBB2-221ENST00000584888 NCAPD3P42695 1498 aa34.44■■■■□ 3.1
ERBB2-221ENST00000584888 ATAD2BQ9ULI0 1458 aa34.35■■■■□ 3.09
ERBB2-221ENST00000584888 SMARCA4P51532 1647 aa34.31■■■■□ 3.08
ERBB2-221ENST00000584888 SMARCA2P51531 1590 aa34.23■■■■□ 3.07
ERBB2-221ENST00000584888 BAZ1AQ9NRL2 1556 aaPredicted RBP34.18■■■■□ 3.06
ERBB2-221ENST00000584888 HMGXB3Q12766 1538 aa34.14■■■■□ 3.06
ERBB2-221ENST00000584888 BAZ1BQ9UIG0 1483 aaKnown RBP34.01■■■■□ 3.03
ERBB2-221ENST00000584888 PEG3Q9GZU2 1588 aa33.98■■■■□ 3.03
ERBB2-221ENST00000584888 MROH2BQ7Z745 1585 aa33.97■■■■□ 3.03
ERBB2-221ENST00000584888 ERCC6Q03468 1493 aa33.94■■■■□ 3.02
ERBB2-221ENST00000584888 NESP48681 1621 aa33.84■■■■□ 3.01
ERBB2-221ENST00000584888 CUX2O14529 1486 aa33.81■■■■□ 3
ERBB2-221ENST00000584888 DNAJC5Q9H3Z4 198 aa33.69■■■□□ 2.98
ERBB2-221ENST00000584888 LAMC3Q9Y6N6 1575 aa33.59■■■□□ 2.97
ERBB2-221ENST00000584888 WIZO95785 1651 aa33.54■■■□□ 2.96
ERBB2-221ENST00000584888 PDS5BQ9NTI5 1447 aa33.44■■■□□ 2.94
ERBB2-221ENST00000584888 CADPSQ9ULU8 1353 aa33.41■■■□□ 2.94
ERBB2-221ENST00000584888 THOC2Q8NI27 1593 aaKnown RBP33.4■■■□□ 2.94
ERBB2-221ENST00000584888 RSF1Q96T23 1441 aaPredicted RBP33.35■■■□□ 2.93
ERBB2-221ENST00000584888 KIF21AQ7Z4S6 1674 aa33.33■■■□□ 2.93
ERBB2-221ENST00000584888 TOP2AP11388 1531 aaKnown RBP33.12■■■□□ 2.89
ERBB2-221ENST00000584888 MRC2Q9UBG0 1479 aa33.12■■■□□ 2.89
ERBB2-221ENST00000584888 CFTRP13569 1480 aa33.05■■■□□ 2.88
ERBB2-221ENST00000584888 FANCD2Q9BXW9 1451 aa33.01■■■□□ 2.88
ERBB2-221ENST00000584888 CEP164Q9UPV0 1460 aa33.01■■■□□ 2.88
ERBB2-221ENST00000584888 WDR62O43379 1518 aa33.01■■■□□ 2.87
ERBB2-221ENST00000584888 CCDC88BA6NC98 1476 aa32.8■■■□□ 2.84
ERBB2-221ENST00000584888 URB2Q14146 1524 aaKnown RBP32.72■■■□□ 2.83
ERBB2-221ENST00000584888 PRDM2Q13029 1718 aa32.61■■■□□ 2.81
ERBB2-221ENST00000584888 TOPBP1Q92547 1522 aa32.4■■■□□ 2.78
ERBB2-221ENST00000584888 OSCARQ8IYS5 282 aa32.37■■■□□ 2.77
ERBB2-221ENST00000584888 IFT140Q96RY7 1462 aa32.35■■■□□ 2.77
ERBB2-221ENST00000584888 ABCC8Q09428 1581 aa32.34■■■□□ 2.77
ERBB2-221ENST00000584888 ZNF608Q9ULD9 1512 aaPredicted RBP32.3■■■□□ 2.76
ERBB2-221ENST00000584888 TRIM41Q8WV44 630 aa32.27■■■□□ 2.76
ERBB2-221ENST00000584888 DNMBPQ6XZF7 1577 aa32.26■■■□□ 2.75
ERBB2-221ENST00000584888 SUPT5HO00267 1087 aaKnown RBP32.19■■■□□ 2.74
ERBB2-221ENST00000584888 POLA1P09884 1462 aaPredicted RBP32.08■■■□□ 2.73
ERBB2-221ENST00000584888 EIF4G3O43432 1585 aaKnown RBP32.07■■■□□ 2.72
ERBB2-221ENST00000584888 TARBP1Q13395 1621 aaKnown RBP32.07■■■□□ 2.72
ERBB2-221ENST00000584888 AQRO60306 1485 aaKnown RBP eCLIP32.05■■■□□ 2.72
ERBB2-221ENST00000584888 RAD54L2Q9Y4B4 1467 aa31.97■■■□□ 2.71
ERBB2-221ENST00000584888 SOGA1O94964 1423 aa31.97■■■□□ 2.71
ERBB2-221ENST00000584888 TDRD9Q8NDG6 1382 aaKnown RBP31.9■■■□□ 2.7
ERBB2-221ENST00000584888 FGD5Q6ZNL6 1462 aa31.9■■■□□ 2.7
ERBB2-221ENST00000584888 CUX1P39880 1505 aa31.9■■■□□ 2.7
ERBB2-221ENST00000584888 FBLN2P98095 1184 aa31.84■■■□□ 2.69
ERBB2-221ENST00000584888 RIMBP3CA6NJZ7 1639 aa31.84■■■□□ 2.69
ERBB2-221ENST00000584888 RIMBP3BA6NNM3 1639 aa31.84■■■□□ 2.69
ERBB2-221ENST00000584888 RIMBP3Q9UFD9 1639 aa31.84■■■□□ 2.69
ERBB2-221ENST00000584888 CHD1O14646 1710 aa31.79■■■□□ 2.68
ERBB2-221ENST00000584888 ARHGEF11O15085 1522 aa31.78■■■□□ 2.68
ERBB2-221ENST00000584888 WDR97A6NE52 1622 aa31.73■■■□□ 2.67
ERBB2-221ENST00000584888 SNAPC4Q5SXM2 1469 aa31.69■■■□□ 2.66
ERBB2-221ENST00000584888 GRIN2BQ13224 1484 aa31.65■■■□□ 2.66
ERBB2-221ENST00000584888 CHMP7Q8WUX9 453 aaPredicted RBP31.63■■■□□ 2.65
ERBB2-221ENST00000584888 MAGI1Q96QZ7 1491 aaPredicted RBP31.61■■■□□ 2.65
ERBB2-221ENST00000584888 CYB5RLQ6IPT4 315 aa31.61■■■□□ 2.65
ERBB2-221ENST00000584888 GAPVD1Q14C86 1478 aa31.56■■■□□ 2.64
ERBB2-221ENST00000584888 ABCA10Q8WWZ4 1543 aa31.54■■■□□ 2.64
ERBB2-221ENST00000584888 SYNJ2O15056 1496 aa31.52■■■□□ 2.64
ERBB2-221ENST00000584888 ARAP1Q96P48 1450 aa31.48■■■□□ 2.63
ERBB2-221ENST00000584888 WRNQ14191 1432 aaPredicted RBP eCLIP31.48■■■□□ 2.63
ERBB2-221ENST00000584888 CLASP1Q7Z460 1538 aa31.47■■■□□ 2.63
ERBB2-221ENST00000584888 SYNJ1O43426 1573 aa31.46■■■□□ 2.63
ERBB2-221ENST00000584888 PBRM1Q86U86 1689 aa31.45■■■□□ 2.63
ERBB2-221ENST00000584888 ABCA5Q8WWZ7 1642 aa31.45■■■□□ 2.62
ERBB2-221ENST00000584888 TOP2BQ02880 1626 aa31.4■■■□□ 2.62
ERBB2-221ENST00000584888 BIVM-ERCC5R4GMW8 1640 aa31.38■■■□□ 2.61
ERBB2-221ENST00000584888 GRIN2AQ12879 1464 aa31.23■■■□□ 2.59
ERBB2-221ENST00000584888 TRHP20396 242 aaPredicted RBP31.2■■■□□ 2.59
ERBB2-221ENST00000584888 ADAMTS12P58397 1594 aa31.2■■■□□ 2.58
ERBB2-221ENST00000584888 FHAD1B1AJZ9 1412 aa31.17■■■□□ 2.58
ERBB2-221ENST00000584888 ERICH3Q5RHP9 1530 aa31.14■■■□□ 2.58
ERBB2-221ENST00000584888 NUP160Q12769 1436 aa31.13■■■□□ 2.57
ERBB2-221ENST00000584888 CEP170Q5SW79 1584 aa31.09■■■□□ 2.57
ERBB2-221ENST00000584888 ERCC6L2Q5T890 1561 aa31.01■■■□□ 2.56
ERBB2-221ENST00000584888 SHROOM2Q13796 1616 aa30.93■■■□□ 2.54
ERBB2-221ENST00000584888 JPH4Q96JJ6 628 aa30.87■■■□□ 2.53
ERBB2-221ENST00000584888 IGF1RP08069 1367 aa30.85■■■□□ 2.53
ERBB2-221ENST00000584888 KIF27Q86VH2 1401 aa30.84■■■□□ 2.53
ERBB2-221ENST00000584888 PRG4Q92954 1404 aaPredicted RBP30.84■■■□□ 2.53
Retrieved 100 of 20,778 RNA–protein pairs in 211 ms