RNA–Protein interactions for RNA: ENST00000582486.5

GGA3-213, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 5 BASIC

Gene GGA3, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-213ENST00000582486 NISCHQ9Y2I1 1504 aa25.05■■□□□ 1.6
GGA3-213ENST00000582486 CCDC180Q9P1Z9 1646 aa21.71■■□□□ 1.07
GGA3-213ENST00000582486 ZCCHC6Q5VYS8 1495 aaKnown RBP21.06■□□□□ 0.96
GGA3-213ENST00000582486 DCAF8L2P0C7V8 631 aa20.81■□□□□ 0.92
GGA3-213ENST00000582486 DCAF1Q9Y4B6 1507 aa20.65■□□□□ 0.9
GGA3-213ENST00000582486 SHROOM4Q9ULL8 1493 aa20.64■□□□□ 0.9
GGA3-213ENST00000582486 ABCC9O60706 1549 aa20.57■□□□□ 0.88
GGA3-213ENST00000582486 MYO15BQ96JP2 1530 aa20.35■□□□□ 0.85
GGA3-213ENST00000582486 NACADO15069 1562 aa20.23■□□□□ 0.83
GGA3-213ENST00000582486 SCRIBQ14160 1630 aa20.09■□□□□ 0.81
GGA3-213ENST00000582486 RB1CC1Q8TDY2 1594 aa20.03■□□□□ 0.8
GGA3-213ENST00000582486 SUPT5HO00267 1087 aaKnown RBP19.93■□□□□ 0.78
GGA3-213ENST00000582486 UNC13AQ9UPW8 1703 aa19.65■□□□□ 0.74
GGA3-213ENST00000582486 CECR2Q9BXF3 1484 aa19.52■□□□□ 0.71
GGA3-213ENST00000582486 RSF1Q96T23 1441 aaPredicted RBP19.51■□□□□ 0.71
GGA3-213ENST00000582486 PABPN1Q86U42 306 aaKnown RBP eCLIP19.47■□□□□ 0.71
GGA3-213ENST00000582486 BICRAQ9NZM4 1560 aa19.46■□□□□ 0.71
GGA3-213ENST00000582486 MROH2BQ7Z745 1585 aa19.39■□□□□ 0.69
GGA3-213ENST00000582486 BAZ1AQ9NRL2 1556 aaPredicted RBP19.32■□□□□ 0.68
GGA3-213ENST00000582486 WIZO95785 1651 aa19.24■□□□□ 0.67
GGA3-213ENST00000582486 SMARCA4P51532 1647 aa19.22■□□□□ 0.67
GGA3-213ENST00000582486 CHIC1Q5VXU3 224 aa19.09■□□□□ 0.65
GGA3-213ENST00000582486 TOP2AP11388 1531 aaKnown RBP18.99■□□□□ 0.63
GGA3-213ENST00000582486 PEG3Q9GZU2 1588 aa18.95■□□□□ 0.62
GGA3-213ENST00000582486 ATAD2BQ9ULI0 1458 aa18.9■□□□□ 0.62
GGA3-213ENST00000582486 EIF4G1Q04637 1599 aaKnown RBP18.87■□□□□ 0.61
GGA3-213ENST00000582486 CCDC88BA6NC98 1476 aa18.86■□□□□ 0.61
GGA3-213ENST00000582486 SMARCA2P51531 1590 aa18.85■□□□□ 0.61
GGA3-213ENST00000582486 BAZ1BQ9UIG0 1483 aaKnown RBP18.8■□□□□ 0.6
GGA3-213ENST00000582486 NCAPD3P42695 1498 aa18.71■□□□□ 0.58
GGA3-213ENST00000582486 TRIM41Q8WV44 630 aa18.69■□□□□ 0.58
GGA3-213ENST00000582486 HMGXB3Q12766 1538 aa18.65■□□□□ 0.58
GGA3-213ENST00000582486 CC2D2AQ9P2K1 1620 aa18.57■□□□□ 0.56
GGA3-213ENST00000582486 ABCC8Q09428 1581 aa18.51■□□□□ 0.55
GGA3-213ENST00000582486 LOC105371045A0A1W2PR82 267 aa18.43■□□□□ 0.54
GGA3-213ENST00000582486 FAM9AQ8IZU1 332 aaPredicted RBP18.4■□□□□ 0.54
GGA3-213ENST00000582486 WRNQ14191 1432 aaPredicted RBP eCLIP18.36■□□□□ 0.53
GGA3-213ENST00000582486 CFTRP13569 1480 aa18.33■□□□□ 0.52
GGA3-213ENST00000582486 SYNJ1O43426 1573 aa18.27■□□□□ 0.51
GGA3-213ENST00000582486 CADPSQ9ULU8 1353 aa18.26■□□□□ 0.51
GGA3-213ENST00000582486 SOGA1O94964 1423 aa18.21■□□□□ 0.51
GGA3-213ENST00000582486 DNAJC5BQ9UF47 199 aa18.2■□□□□ 0.5
GGA3-213ENST00000582486 EHMT2Q96KQ7 1210 aa18.19■□□□□ 0.5
GGA3-213ENST00000582486 PRDM2Q13029 1718 aa18.17■□□□□ 0.5
GGA3-213ENST00000582486 TOP2BQ02880 1626 aa18.16■□□□□ 0.5
GGA3-213ENST00000582486 RUSC2Q8N2Y8 1516 aa18.14■□□□□ 0.49
GGA3-213ENST00000582486 BIVM-ERCC5R4GMW8 1640 aa18.11■□□□□ 0.49
GGA3-213ENST00000582486 CUX1P39880 1505 aa18.11■□□□□ 0.49
GGA3-213ENST00000582486 EEA1Q15075 1411 aa18.1■□□□□ 0.49
GGA3-213ENST00000582486 NESP48681 1621 aa18.1■□□□□ 0.49
GGA3-213ENST00000582486 CSRNP3Q8WYN3 585 aa18.07■□□□□ 0.48
GGA3-213ENST00000582486 FANCD2Q9BXW9 1451 aa18.06■□□□□ 0.48
GGA3-213ENST00000582486 LAMC3Q9Y6N6 1575 aa18.02■□□□□ 0.48
GGA3-213ENST00000582486 PDS5BQ9NTI5 1447 aa17.91■□□□□ 0.46
GGA3-213ENST00000582486 CEP164Q9UPV0 1460 aa17.91■□□□□ 0.46
GGA3-213ENST00000582486 FGD5Q6ZNL6 1462 aa17.9■□□□□ 0.46
GGA3-213ENST00000582486 GOLGA3Q08378 1498 aa17.89■□□□□ 0.45
GGA3-213ENST00000582486 UBTFP17480 764 aaKnown RBP17.89■□□□□ 0.45
GGA3-213ENST00000582486 DNMBPQ6XZF7 1577 aa17.88■□□□□ 0.45
GGA3-213ENST00000582486 KIF27Q86VH2 1401 aa17.87■□□□□ 0.45
GGA3-213ENST00000582486 TNIKQ9UKE5 1360 aa17.87■□□□□ 0.45
GGA3-213ENST00000582486 TOPBP1Q92547 1522 aa17.87■□□□□ 0.45
GGA3-213ENST00000582486 KIF21BO75037 1637 aa17.86■□□□□ 0.45
GGA3-213ENST00000582486 URB2Q14146 1524 aaKnown RBP17.83■□□□□ 0.44
GGA3-213ENST00000582486 KIF21AQ7Z4S6 1674 aa17.82■□□□□ 0.44
GGA3-213ENST00000582486 CUX2O14529 1486 aa17.82■□□□□ 0.44
GGA3-213ENST00000582486 RAPGEF2Q9Y4G8 1499 aa17.81■□□□□ 0.44
GGA3-213ENST00000582486 CEP162Q5TB80 1403 aa17.8■□□□□ 0.44
GGA3-213ENST00000582486 POLA1P09884 1462 aaPredicted RBP17.8■□□□□ 0.44
GGA3-213ENST00000582486 PRXQ9BXM0 1461 aa17.78■□□□□ 0.44
GGA3-213ENST00000582486 RAD54L2Q9Y4B4 1467 aa17.78■□□□□ 0.44
GGA3-213ENST00000582486 IGF1RP08069 1367 aa17.74■□□□□ 0.43
GGA3-213ENST00000582486 ERICH3Q5RHP9 1530 aa17.72■□□□□ 0.43
GGA3-213ENST00000582486 ABCA10Q8WWZ4 1543 aa17.72■□□□□ 0.43
GGA3-213ENST00000582486 PCGF6Q9BYE7 350 aa17.69■□□□□ 0.42
GGA3-213ENST00000582486 MRC2Q9UBG0 1479 aa17.67■□□□□ 0.42
GGA3-213ENST00000582486 CARMIL1Q5VZK9 1371 aa17.65■□□□□ 0.42
GGA3-213ENST00000582486 CLIP1P30622 1438 aa17.63■□□□□ 0.41
GGA3-213ENST00000582486 RANGAP1P46060 587 aaPredicted RBP17.63■□□□□ 0.41
GGA3-213ENST00000582486 WDR97A6NE52 1622 aa17.62■□□□□ 0.41
GGA3-213ENST00000582486 TDRD9Q8NDG6 1382 aaKnown RBP17.61■□□□□ 0.41
GGA3-213ENST00000582486 TRIM26Q12899 539 aaPredicted RBP17.61■□□□□ 0.41
GGA3-213ENST00000582486 ERCC6Q03468 1493 aa17.6■□□□□ 0.41
GGA3-213ENST00000582486 PPARGC1BQ86YN6 1023 aaKnown RBP17.58■□□□□ 0.41
GGA3-213ENST00000582486 TARBP1Q13395 1621 aaKnown RBP17.57■□□□□ 0.4
GGA3-213ENST00000582486 WDR62O43379 1518 aa17.56■□□□□ 0.4
GGA3-213ENST00000582486 ABCA5Q8WWZ7 1642 aa17.55■□□□□ 0.4
GGA3-213ENST00000582486 GAPVD1Q14C86 1478 aa17.55■□□□□ 0.4
GGA3-213ENST00000582486 CUL7Q14999 1698 aa17.5■□□□□ 0.39
GGA3-213ENST00000582486 THOC2Q8NI27 1593 aaKnown RBP17.48■□□□□ 0.39
GGA3-213ENST00000582486 VPS8Q8N3P4 1428 aa17.48■□□□□ 0.39
GGA3-213ENST00000582486 AQRO60306 1485 aaKnown RBP eCLIP17.47■□□□□ 0.391e-7■■■■□ 25.8
GGA3-213ENST00000582486 IFT140Q96RY7 1462 aa17.47■□□□□ 0.39
GGA3-213ENST00000582486 ARAP1Q96P48 1450 aa17.44■□□□□ 0.38
GGA3-213ENST00000582486 ZNF608Q9ULD9 1512 aaPredicted RBP17.43■□□□□ 0.38
GGA3-213ENST00000582486 ARHGAP35Q9NRY4 1499 aa17.42■□□□□ 0.38
GGA3-213ENST00000582486 TTBK1Q5TCY1 1321 aaPredicted RBP17.42■□□□□ 0.38
GGA3-213ENST00000582486 PBRM1Q86U86 1689 aa17.39■□□□□ 0.38
GGA3-213ENST00000582486 GRIN2BQ13224 1484 aa17.38■□□□□ 0.37
GGA3-213ENST00000582486 APLP2Q06481 763 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms