RNA–Protein interactions for RNA: ENST00000581832.1

SMARCD2-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2, humanhuman

TSL 3

Gene SMARCD2, Length 562 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD2-209ENST00000581832 NISCHQ9Y2I1 1504 aa30.56■■■□□ 2.48
SMARCD2-209ENST00000581832 CCDC180Q9P1Z9 1646 aa27.2■■□□□ 1.95
SMARCD2-209ENST00000581832 ABCC9O60706 1549 aa26.75■■□□□ 1.87
SMARCD2-209ENST00000581832 RB1CC1Q8TDY2 1594 aa25.66■■□□□ 1.7
SMARCD2-209ENST00000581832 NACADO15069 1562 aa25.62■■□□□ 1.69
SMARCD2-209ENST00000581832 DCAF8L2P0C7V8 631 aa25.5■■□□□ 1.67
SMARCD2-209ENST00000581832 MYO15BQ96JP2 1530 aa25.46■■□□□ 1.67
SMARCD2-209ENST00000581832 ZCCHC6Q5VYS8 1495 aaKnown RBP25.42■■□□□ 1.66
SMARCD2-209ENST00000581832 DCAF1Q9Y4B6 1507 aa25.29■■□□□ 1.64
SMARCD2-209ENST00000581832 UNC13AQ9UPW8 1703 aa25.17■■□□□ 1.62
SMARCD2-209ENST00000581832 PABPN1Q86U42 306 aaKnown RBP eCLIP25■■□□□ 1.59
SMARCD2-209ENST00000581832 BICRAQ9NZM4 1560 aa24.99■■□□□ 1.59
SMARCD2-209ENST00000581832 DNAJC5BQ9UF47 199 aa24.83■■□□□ 1.57
SMARCD2-209ENST00000581832 SCRIBQ14160 1630 aa24.79■■□□□ 1.56
SMARCD2-209ENST00000581832 SHROOM4Q9ULL8 1493 aa24.64■■□□□ 1.53
SMARCD2-209ENST00000581832 EIF4G1Q04637 1599 aaKnown RBP24.29■■□□□ 1.48
SMARCD2-209ENST00000581832 CC2D2AQ9P2K1 1620 aa24.23■■□□□ 1.47
SMARCD2-209ENST00000581832 CECR2Q9BXF3 1484 aa24.07■■□□□ 1.44
SMARCD2-209ENST00000581832 SMARCA4P51532 1647 aa23.73■■□□□ 1.39
SMARCD2-209ENST00000581832 NCAPD3P42695 1498 aa23.68■■□□□ 1.38
SMARCD2-209ENST00000581832 ATAD2BQ9ULI0 1458 aa23.66■■□□□ 1.38
SMARCD2-209ENST00000581832 BAZ1AQ9NRL2 1556 aaPredicted RBP23.65■■□□□ 1.38
SMARCD2-209ENST00000581832 SMARCA2P51531 1590 aa23.57■■□□□ 1.36
SMARCD2-209ENST00000581832 MROH2BQ7Z745 1585 aa23.56■■□□□ 1.36
SMARCD2-209ENST00000581832 PEG3Q9GZU2 1588 aa23.54■■□□□ 1.36
SMARCD2-209ENST00000581832 HMGXB3Q12766 1538 aa23.52■■□□□ 1.36
SMARCD2-209ENST00000581832 BAZ1BQ9UIG0 1483 aaKnown RBP23.4■■□□□ 1.34
SMARCD2-209ENST00000581832 WIZO95785 1651 aa23.29■■□□□ 1.32
SMARCD2-209ENST00000581832 RSF1Q96T23 1441 aaPredicted RBP23.24■■□□□ 1.31
SMARCD2-209ENST00000581832 NESP48681 1621 aa23.15■■□□□ 1.3
SMARCD2-209ENST00000581832 LAMC3Q9Y6N6 1575 aa23.04■■□□□ 1.28
SMARCD2-209ENST00000581832 ERCC6Q03468 1493 aa23.02■■□□□ 1.28
SMARCD2-209ENST00000581832 TOP2AP11388 1531 aaKnown RBP23■■□□□ 1.27
SMARCD2-209ENST00000581832 CADPSQ9ULU8 1353 aa22.97■■□□□ 1.27
SMARCD2-209ENST00000581832 CUX2O14529 1486 aa22.89■■□□□ 1.25
SMARCD2-209ENST00000581832 PDS5BQ9NTI5 1447 aa22.87■■□□□ 1.25
SMARCD2-209ENST00000581832 KIF21AQ7Z4S6 1674 aa22.86■■□□□ 1.25
SMARCD2-209ENST00000581832 THOC2Q8NI27 1593 aaKnown RBP22.83■■□□□ 1.25
SMARCD2-209ENST00000581832 CFTRP13569 1480 aa22.8■■□□□ 1.24
SMARCD2-209ENST00000581832 CCDC88BA6NC98 1476 aa22.76■■□□□ 1.23
SMARCD2-209ENST00000581832 FANCD2Q9BXW9 1451 aa22.67■■□□□ 1.22
SMARCD2-209ENST00000581832 MRC2Q9UBG0 1479 aa22.65■■□□□ 1.22
SMARCD2-209ENST00000581832 CEP164Q9UPV0 1460 aa22.63■■□□□ 1.21
SMARCD2-209ENST00000581832 WDR62O43379 1518 aa22.61■■□□□ 1.21
SMARCD2-209ENST00000581832 PRDM2Q13029 1718 aa22.6■■□□□ 1.21
SMARCD2-209ENST00000581832 URB2Q14146 1524 aaKnown RBP22.5■■□□□ 1.19
SMARCD2-209ENST00000581832 SUPT5HO00267 1087 aaKnown RBP22.45■■□□□ 1.18
SMARCD2-209ENST00000581832 DNAJC5Q9H3Z4 198 aa22.43■■□□□ 1.18
SMARCD2-209ENST00000581832 TOPBP1Q92547 1522 aa22.31■■□□□ 1.16
SMARCD2-209ENST00000581832 ABCC8Q09428 1581 aa22.26■■□□□ 1.15
SMARCD2-209ENST00000581832 DNMBPQ6XZF7 1577 aa22.25■■□□□ 1.15
SMARCD2-209ENST00000581832 IFT140Q96RY7 1462 aa22.19■■□□□ 1.14
SMARCD2-209ENST00000581832 ZNF608Q9ULD9 1512 aaPredicted RBP22.14■■□□□ 1.13
SMARCD2-209ENST00000581832 POLA1P09884 1462 aaPredicted RBP22.11■■□□□ 1.13
SMARCD2-209ENST00000581832 TARBP1Q13395 1621 aaKnown RBP22.1■■□□□ 1.13
SMARCD2-209ENST00000581832 CUX1P39880 1505 aa22.1■■□□□ 1.13
SMARCD2-209ENST00000581832 RAD54L2Q9Y4B4 1467 aa22.03■■□□□ 1.12
SMARCD2-209ENST00000581832 FGD5Q6ZNL6 1462 aa22.02■■□□□ 1.12
SMARCD2-209ENST00000581832 EIF4G3O43432 1585 aaKnown RBP22■■□□□ 1.11
SMARCD2-209ENST00000581832 SOGA1O94964 1423 aa22■■□□□ 1.11
SMARCD2-209ENST00000581832 AQRO60306 1485 aaKnown RBP eCLIP21.99■■□□□ 1.11
SMARCD2-209ENST00000581832 OSCARQ8IYS5 282 aa21.92■■□□□ 1.1
SMARCD2-209ENST00000581832 TDRD9Q8NDG6 1382 aaKnown RBP21.91■■□□□ 1.1
SMARCD2-209ENST00000581832 WDR97A6NE52 1622 aa21.88■■□□□ 1.09
SMARCD2-209ENST00000581832 WRNQ14191 1432 aaPredicted RBP eCLIP21.86■■□□□ 1.09
SMARCD2-209ENST00000581832 TOP2BQ02880 1626 aa21.85■■□□□ 1.09
SMARCD2-209ENST00000581832 BIVM-ERCC5R4GMW8 1640 aa21.85■■□□□ 1.09
SMARCD2-209ENST00000581832 SYNJ1O43426 1573 aa21.84■■□□□ 1.09
SMARCD2-209ENST00000581832 ABCA10Q8WWZ4 1543 aa21.82■■□□□ 1.08
SMARCD2-209ENST00000581832 CHD1O14646 1710 aa21.77■■□□□ 1.08
SMARCD2-209ENST00000581832 GRIN2BQ13224 1484 aa21.76■■□□□ 1.07
SMARCD2-209ENST00000581832 SNAPC4Q5SXM2 1469 aa21.75■■□□□ 1.07
SMARCD2-209ENST00000581832 ABCA5Q8WWZ7 1642 aa21.74■■□□□ 1.07
SMARCD2-209ENST00000581832 GAPVD1Q14C86 1478 aa21.74■■□□□ 1.07
SMARCD2-209ENST00000581832 MAGI1Q96QZ7 1491 aaPredicted RBP21.71■■□□□ 1.07
SMARCD2-209ENST00000581832 PBRM1Q86U86 1689 aa21.7■■□□□ 1.06
SMARCD2-209ENST00000581832 FBLN2P98095 1184 aa21.67■■□□□ 1.06
SMARCD2-209ENST00000581832 SYNJ2O15056 1496 aa21.64■■□□□ 1.05
SMARCD2-209ENST00000581832 CHMP7Q8WUX9 453 aaPredicted RBP21.62■■□□□ 1.05
SMARCD2-209ENST00000581832 RIMBP3CA6NJZ7 1639 aa21.6■■□□□ 1.05
SMARCD2-209ENST00000581832 RIMBP3BA6NNM3 1639 aa21.6■■□□□ 1.05
SMARCD2-209ENST00000581832 RIMBP3Q9UFD9 1639 aa21.6■■□□□ 1.05
SMARCD2-209ENST00000581832 ARHGEF11O15085 1522 aa21.58■■□□□ 1.04
SMARCD2-209ENST00000581832 CLASP1Q7Z460 1538 aa21.56■■□□□ 1.04
SMARCD2-209ENST00000581832 ERICH3Q5RHP9 1530 aa21.55■■□□□ 1.04
SMARCD2-209ENST00000581832 ADAMTS12P58397 1594 aa21.53■■□□□ 1.04
SMARCD2-209ENST00000581832 TRIM41Q8WV44 630 aa21.52■■□□□ 1.04
SMARCD2-209ENST00000581832 FHAD1B1AJZ9 1412 aa21.48■■□□□ 1.03
SMARCD2-209ENST00000581832 GRIN2AQ12879 1464 aa21.48■■□□□ 1.03
SMARCD2-209ENST00000581832 NUP160Q12769 1436 aa21.43■■□□□ 1.02
SMARCD2-209ENST00000581832 ARAP1Q96P48 1450 aa21.41■■□□□ 1.02
SMARCD2-209ENST00000581832 IGF1RP08069 1367 aa21.41■■□□□ 1.02
SMARCD2-209ENST00000581832 CEP170Q5SW79 1584 aa21.4■■□□□ 1.02
SMARCD2-209ENST00000581832 KIF27Q86VH2 1401 aa21.4■■□□□ 1.02
SMARCD2-209ENST00000581832 CYB5RLQ6IPT4 315 aa21.37■■□□□ 1.01
SMARCD2-209ENST00000581832 SHROOM2Q13796 1616 aa21.29■■□□□ 1
SMARCD2-209ENST00000581832 CUL7Q14999 1698 aa21.28■■□□□ 1
SMARCD2-209ENST00000581832 ERCC6L2Q5T890 1561 aa21.27■□□□□ 0.99
SMARCD2-209ENST00000581832 RUSC2Q8N2Y8 1516 aa21.24■□□□□ 0.99
SMARCD2-209ENST00000581832 CARMIL1Q5VZK9 1371 aa21.23■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms