RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 NISCHQ9Y2I1 1504 aa26.57■■□□□ 1.84
RFFL-209ENST00000581265 ABCC9O60706 1549 aa24.14■■□□□ 1.45
RFFL-209ENST00000581265 CCDC180Q9P1Z9 1646 aa23.79■■□□□ 1.4
RFFL-209ENST00000581265 DNAJC5BQ9UF47 199 aa23.16■■□□□ 1.3
RFFL-209ENST00000581265 RB1CC1Q8TDY2 1594 aa22.69■■□□□ 1.22
RFFL-209ENST00000581265 NACADO15069 1562 aa22.55■■□□□ 1.2
RFFL-209ENST00000581265 DCAF8L2P0C7V8 631 aa22.48■■□□□ 1.19
RFFL-209ENST00000581265 PABPN1Q86U42 306 aaKnown RBP eCLIP22.43■■□□□ 1.18
RFFL-209ENST00000581265 MYO15BQ96JP2 1530 aa22.27■■□□□ 1.16
RFFL-209ENST00000581265 UNC13AQ9UPW8 1703 aa22.1■■□□□ 1.13
RFFL-209ENST00000581265 BICRAQ9NZM4 1560 aa22.04■■□□□ 1.12
RFFL-209ENST00000581265 ZCCHC6Q5VYS8 1495 aaKnown RBP21.99■■□□□ 1.11
RFFL-209ENST00000581265 DCAF1Q9Y4B6 1507 aa21.96■■□□□ 1.11
RFFL-209ENST00000581265 CECR2Q9BXF3 1484 aa21.8■■□□□ 1.08
RFFL-209ENST00000581265 DNAJC5Q9H3Z4 198 aa21.79■■□□□ 1.08
RFFL-209ENST00000581265 SHROOM4Q9ULL8 1493 aa21.76■■□□□ 1.07
RFFL-209ENST00000581265 CC2D2AQ9P2K1 1620 aa21.7■■□□□ 1.06
RFFL-209ENST00000581265 SCRIBQ14160 1630 aa21.66■■□□□ 1.06
RFFL-209ENST00000581265 EIF4G1Q04637 1599 aaKnown RBP21.48■■□□□ 1.03
RFFL-209ENST00000581265 CUX2O14529 1486 aa21.03■□□□□ 0.96
RFFL-209ENST00000581265 ERCC6Q03468 1493 aa20.94■□□□□ 0.94
RFFL-209ENST00000581265 NCAPD3P42695 1498 aa20.88■□□□□ 0.93
RFFL-209ENST00000581265 ATAD2BQ9ULI0 1458 aa20.77■□□□□ 0.92
RFFL-209ENST00000581265 TRIM41Q8WV44 630 aa20.7■□□□□ 0.9
RFFL-209ENST00000581265 SMARCA4P51532 1647 aa20.69■□□□□ 0.9
RFFL-209ENST00000581265 SMARCA2P51531 1590 aa20.68■□□□□ 0.9
RFFL-209ENST00000581265 HMGXB3Q12766 1538 aa20.64■□□□□ 0.9
RFFL-209ENST00000581265 BAZ1AQ9NRL2 1556 aaPredicted RBP20.61■□□□□ 0.89
RFFL-209ENST00000581265 BAZ1BQ9UIG0 1483 aaKnown RBP20.54■□□□□ 0.88
RFFL-209ENST00000581265 PEG3Q9GZU2 1588 aa20.53■□□□□ 0.88
RFFL-209ENST00000581265 NESP48681 1621 aa20.5■□□□□ 0.87
RFFL-209ENST00000581265 MROH2BQ7Z745 1585 aa20.46■□□□□ 0.87
RFFL-209ENST00000581265 THOC2Q8NI27 1593 aaKnown RBP20.36■□□□□ 0.85
RFFL-209ENST00000581265 LAMC3Q9Y6N6 1575 aa20.34■□□□□ 0.85
RFFL-209ENST00000581265 PDS5BQ9NTI5 1447 aa20.27■□□□□ 0.83
RFFL-209ENST00000581265 CADPSQ9ULU8 1353 aa20.23■□□□□ 0.83
RFFL-209ENST00000581265 WIZO95785 1651 aa20.17■□□□□ 0.82
RFFL-209ENST00000581265 KIF21AQ7Z4S6 1674 aa20.17■□□□□ 0.82
RFFL-209ENST00000581265 OSCARQ8IYS5 282 aa20.07■□□□□ 0.8
RFFL-209ENST00000581265 RSF1Q96T23 1441 aaPredicted RBP20.07■□□□□ 0.8
RFFL-209ENST00000581265 MRC2Q9UBG0 1479 aa20.05■□□□□ 0.8
RFFL-209ENST00000581265 WDR62O43379 1518 aa20■□□□□ 0.79
RFFL-209ENST00000581265 CFTRP13569 1480 aa19.98■□□□□ 0.79
RFFL-209ENST00000581265 FANCD2Q9BXW9 1451 aa19.96■□□□□ 0.79
RFFL-209ENST00000581265 CEP164Q9UPV0 1460 aa19.96■□□□□ 0.79
RFFL-209ENST00000581265 TOP2AP11388 1531 aaKnown RBP19.94■□□□□ 0.78
RFFL-209ENST00000581265 URB2Q14146 1524 aaKnown RBP19.78■□□□□ 0.76
RFFL-209ENST00000581265 CCDC88BA6NC98 1476 aa19.75■□□□□ 0.75
RFFL-209ENST00000581265 RIMBP3CA6NJZ7 1639 aa19.75■□□□□ 0.75
RFFL-209ENST00000581265 RIMBP3BA6NNM3 1639 aa19.75■□□□□ 0.75
RFFL-209ENST00000581265 RIMBP3Q9UFD9 1639 aa19.75■□□□□ 0.75
RFFL-209ENST00000581265 TRHP20396 242 aaPredicted RBP19.73■□□□□ 0.75
RFFL-209ENST00000581265 AEBP2Q6ZN18 517 aaPredicted RBP19.68■□□□□ 0.74
RFFL-209ENST00000581265 CYB5RLQ6IPT4 315 aa19.66■□□□□ 0.74
RFFL-209ENST00000581265 PRDM2Q13029 1718 aa19.65■□□□□ 0.74
RFFL-209ENST00000581265 ARHGEF11O15085 1522 aa19.63■□□□□ 0.73
RFFL-209ENST00000581265 IFT140Q96RY7 1462 aa19.59■□□□□ 0.73
RFFL-209ENST00000581265 TOPBP1Q92547 1522 aa19.57■□□□□ 0.72
RFFL-209ENST00000581265 ABCC8Q09428 1581 aa19.57■□□□□ 0.72
RFFL-209ENST00000581265 ZNF608Q9ULD9 1512 aaPredicted RBP19.54■□□□□ 0.72
RFFL-209ENST00000581265 DNMBPQ6XZF7 1577 aa19.47■□□□□ 0.71
RFFL-209ENST00000581265 FBLN2P98095 1184 aa19.42■□□□□ 0.7
RFFL-209ENST00000581265 AQRO60306 1485 aaKnown RBP eCLIP19.39■□□□□ 0.69
RFFL-209ENST00000581265 ARAP1Q96P48 1450 aa19.39■□□□□ 0.69
RFFL-209ENST00000581265 EIF4G3O43432 1585 aaKnown RBP19.38■□□□□ 0.69
RFFL-209ENST00000581265 TARBP1Q13395 1621 aaKnown RBP19.38■□□□□ 0.69
RFFL-209ENST00000581265 POLA1P09884 1462 aaPredicted RBP19.37■□□□□ 0.69
RFFL-209ENST00000581265 SOGA1O94964 1423 aa19.32■□□□□ 0.68
RFFL-209ENST00000581265 RAD54L2Q9Y4B4 1467 aa19.3■□□□□ 0.68
RFFL-209ENST00000581265 TDRD9Q8NDG6 1382 aaKnown RBP19.29■□□□□ 0.68
RFFL-209ENST00000581265 CHD1O14646 1710 aa19.28■□□□□ 0.68
RFFL-209ENST00000581265 FGD5Q6ZNL6 1462 aa19.23■□□□□ 0.67
RFFL-209ENST00000581265 CUX1P39880 1505 aa19.21■□□□□ 0.67
RFFL-209ENST00000581265 WDR97A6NE52 1622 aa19.18■□□□□ 0.66
RFFL-209ENST00000581265 SUPT5HO00267 1087 aaKnown RBP19.16■□□□□ 0.66
RFFL-209ENST00000581265 CHMP7Q8WUX9 453 aaPredicted RBP19.16■□□□□ 0.66
RFFL-209ENST00000581265 SNAPC4Q5SXM2 1469 aa19.15■□□□□ 0.66
RFFL-209ENST00000581265 GRIN2BQ13224 1484 aa19.13■□□□□ 0.65
RFFL-209ENST00000581265 MAGI1Q96QZ7 1491 aaPredicted RBP19.13■□□□□ 0.65
RFFL-209ENST00000581265 SYNJ2O15056 1496 aa19.07■□□□□ 0.64
RFFL-209ENST00000581265 GAPVD1Q14C86 1478 aa19.06■□□□□ 0.64
RFFL-209ENST00000581265 CLASP1Q7Z460 1538 aa19.05■□□□□ 0.64
RFFL-209ENST00000581265 SYNJ1O43426 1573 aa19.05■□□□□ 0.64
RFFL-209ENST00000581265 ABCA10Q8WWZ4 1543 aa19.04■□□□□ 0.64
RFFL-209ENST00000581265 WRNQ14191 1432 aaPredicted RBP eCLIP18.99■□□□□ 0.63
RFFL-209ENST00000581265 ABCA5Q8WWZ7 1642 aa18.96■□□□□ 0.63
RFFL-209ENST00000581265 PBRM1Q86U86 1689 aa18.95■□□□□ 0.62
RFFL-209ENST00000581265 TOP2BQ02880 1626 aa18.89■□□□□ 0.62
RFFL-209ENST00000581265 GRIN2AQ12879 1464 aa18.87■□□□□ 0.61
RFFL-209ENST00000581265 BIVM-ERCC5R4GMW8 1640 aa18.86■□□□□ 0.61
RFFL-209ENST00000581265 FHAD1B1AJZ9 1412 aa18.83■□□□□ 0.61
RFFL-209ENST00000581265 NUP160Q12769 1436 aa18.83■□□□□ 0.61
RFFL-209ENST00000581265 ADAMTS12P58397 1594 aa18.81■□□□□ 0.6
RFFL-209ENST00000581265 ERICH3Q5RHP9 1530 aa18.79■□□□□ 0.6
RFFL-209ENST00000581265 CEP170Q5SW79 1584 aa18.77■□□□□ 0.6
RFFL-209ENST00000581265 ILDR1Q86SU0 546 aaPredicted RBP18.76■□□□□ 0.59
RFFL-209ENST00000581265 ERCC6L2Q5T890 1561 aa18.75■□□□□ 0.59
RFFL-209ENST00000581265 SHROOM2Q13796 1616 aa18.71■□□□□ 0.58
RFFL-209ENST00000581265 JPH4Q96JJ6 628 aa18.69■□□□□ 0.58
RFFL-209ENST00000581265 FAM69CQ0P6D2 419 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms