RNA–Protein interactions for RNA: ENST00000581250.5

PPP4R1-219, Transcript of protein phosphatase 4 regulatory subunit 1, humanhuman

TSL 4

Gene PPP4R1, Length 578 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R1-219ENST00000581250 NISCHQ9Y2I1 1504 aa29.16■■■□□ 2.26
PPP4R1-219ENST00000581250 CCDC180Q9P1Z9 1646 aa26.02■■□□□ 1.76
PPP4R1-219ENST00000581250 ABCC9O60706 1549 aa25.62■■□□□ 1.69
PPP4R1-219ENST00000581250 RB1CC1Q8TDY2 1594 aa24.54■■□□□ 1.52
PPP4R1-219ENST00000581250 DCAF8L2P0C7V8 631 aa24.45■■□□□ 1.5
PPP4R1-219ENST00000581250 NACADO15069 1562 aa24.45■■□□□ 1.5
PPP4R1-219ENST00000581250 ZCCHC6Q5VYS8 1495 aaKnown RBP24.28■■□□□ 1.48
PPP4R1-219ENST00000581250 MYO15BQ96JP2 1530 aa24.2■■□□□ 1.46
PPP4R1-219ENST00000581250 DCAF1Q9Y4B6 1507 aa24.07■■□□□ 1.44
PPP4R1-219ENST00000581250 UNC13AQ9UPW8 1703 aa24.07■■□□□ 1.44
PPP4R1-219ENST00000581250 PABPN1Q86U42 306 aaKnown RBP eCLIP23.89■■□□□ 1.41
PPP4R1-219ENST00000581250 BICRAQ9NZM4 1560 aa23.82■■□□□ 1.4
PPP4R1-219ENST00000581250 SCRIBQ14160 1630 aa23.81■■□□□ 1.4
PPP4R1-219ENST00000581250 DNAJC5BQ9UF47 199 aa23.58■■□□□ 1.37
PPP4R1-219ENST00000581250 SHROOM4Q9ULL8 1493 aa23.48■■□□□ 1.35
PPP4R1-219ENST00000581250 EIF4G1Q04637 1599 aaKnown RBP23.2■■□□□ 1.3
PPP4R1-219ENST00000581250 CC2D2AQ9P2K1 1620 aa23.16■■□□□ 1.3
PPP4R1-219ENST00000581250 CECR2Q9BXF3 1484 aa23■■□□□ 1.27
PPP4R1-219ENST00000581250 SMARCA4P51532 1647 aa22.71■■□□□ 1.23
PPP4R1-219ENST00000581250 BAZ1AQ9NRL2 1556 aaPredicted RBP22.62■■□□□ 1.21
PPP4R1-219ENST00000581250 ATAD2BQ9ULI0 1458 aa22.56■■□□□ 1.2
PPP4R1-219ENST00000581250 SMARCA2P51531 1590 aa22.55■■□□□ 1.2
PPP4R1-219ENST00000581250 NCAPD3P42695 1498 aa22.53■■□□□ 1.2
PPP4R1-219ENST00000581250 MROH2BQ7Z745 1585 aa22.5■■□□□ 1.19
PPP4R1-219ENST00000581250 HMGXB3Q12766 1538 aa22.47■■□□□ 1.19
PPP4R1-219ENST00000581250 PEG3Q9GZU2 1588 aa22.42■■□□□ 1.18
PPP4R1-219ENST00000581250 BAZ1BQ9UIG0 1483 aaKnown RBP22.41■■□□□ 1.18
PPP4R1-219ENST00000581250 WIZO95785 1651 aa22.3■■□□□ 1.16
PPP4R1-219ENST00000581250 RSF1Q96T23 1441 aaPredicted RBP22.16■■□□□ 1.14
PPP4R1-219ENST00000581250 NESP48681 1621 aa22.14■■□□□ 1.14
PPP4R1-219ENST00000581250 ERCC6Q03468 1493 aa22.09■■□□□ 1.13
PPP4R1-219ENST00000581250 TOP2AP11388 1531 aaKnown RBP22.01■■□□□ 1.11
PPP4R1-219ENST00000581250 LAMC3Q9Y6N6 1575 aa22■■□□□ 1.11
PPP4R1-219ENST00000581250 KIF21AQ7Z4S6 1674 aa21.91■■□□□ 1.1
PPP4R1-219ENST00000581250 CADPSQ9ULU8 1353 aa21.87■■□□□ 1.09
PPP4R1-219ENST00000581250 CUX2O14529 1486 aa21.84■■□□□ 1.09
PPP4R1-219ENST00000581250 THOC2Q8NI27 1593 aaKnown RBP21.83■■□□□ 1.09
PPP4R1-219ENST00000581250 PDS5BQ9NTI5 1447 aa21.83■■□□□ 1.09
PPP4R1-219ENST00000581250 CCDC88BA6NC98 1476 aa21.73■■□□□ 1.07
PPP4R1-219ENST00000581250 CFTRP13569 1480 aa21.73■■□□□ 1.07
PPP4R1-219ENST00000581250 FANCD2Q9BXW9 1451 aa21.68■■□□□ 1.06
PPP4R1-219ENST00000581250 CEP164Q9UPV0 1460 aa21.68■■□□□ 1.06
PPP4R1-219ENST00000581250 MRC2Q9UBG0 1479 aa21.67■■□□□ 1.06
PPP4R1-219ENST00000581250 PRDM2Q13029 1718 aa21.66■■□□□ 1.06
PPP4R1-219ENST00000581250 WDR62O43379 1518 aa21.6■■□□□ 1.05
PPP4R1-219ENST00000581250 SUPT5HO00267 1087 aaKnown RBP21.55■■□□□ 1.04
PPP4R1-219ENST00000581250 URB2Q14146 1524 aaKnown RBP21.5■■□□□ 1.03
PPP4R1-219ENST00000581250 TOPBP1Q92547 1522 aa21.32■■□□□ 1
PPP4R1-219ENST00000581250 DNMBPQ6XZF7 1577 aa21.3■■□□□ 1
PPP4R1-219ENST00000581250 DNAJC5Q9H3Z4 198 aa21.28■■□□□ 1
PPP4R1-219ENST00000581250 ABCC8Q09428 1581 aa21.23■□□□□ 0.99
PPP4R1-219ENST00000581250 IFT140Q96RY7 1462 aa21.19■□□□□ 0.98
PPP4R1-219ENST00000581250 ZNF608Q9ULD9 1512 aaPredicted RBP21.16■□□□□ 0.98
PPP4R1-219ENST00000581250 CUX1P39880 1505 aa21.14■□□□□ 0.97
PPP4R1-219ENST00000581250 POLA1P09884 1462 aaPredicted RBP21.13■□□□□ 0.97
PPP4R1-219ENST00000581250 TARBP1Q13395 1621 aaKnown RBP21.11■□□□□ 0.97
PPP4R1-219ENST00000581250 EIF4G3O43432 1585 aaKnown RBP21.1■□□□□ 0.97
PPP4R1-219ENST00000581250 FGD5Q6ZNL6 1462 aa21.08■□□□□ 0.97
PPP4R1-219ENST00000581250 RAD54L2Q9Y4B4 1467 aa21.07■□□□□ 0.96
PPP4R1-219ENST00000581250 SOGA1O94964 1423 aa21.01■□□□□ 0.95
PPP4R1-219ENST00000581250 AQRO60306 1485 aaKnown RBP eCLIP21.01■□□□□ 0.957e-12■□□□□ 9.9
PPP4R1-219ENST00000581250 WDR97A6NE52 1622 aa20.94■□□□□ 0.94
PPP4R1-219ENST00000581250 TDRD9Q8NDG6 1382 aaKnown RBP20.94■□□□□ 0.94
PPP4R1-219ENST00000581250 SYNJ1O43426 1573 aa20.93■□□□□ 0.94
PPP4R1-219ENST00000581250 WRNQ14191 1432 aaPredicted RBP eCLIP20.92■□□□□ 0.94
PPP4R1-219ENST00000581250 BIVM-ERCC5R4GMW8 1640 aa20.91■□□□□ 0.94
PPP4R1-219ENST00000581250 TOP2BQ02880 1626 aa20.9■□□□□ 0.94
PPP4R1-219ENST00000581250 CHD1O14646 1710 aa20.89■□□□□ 0.93
PPP4R1-219ENST00000581250 OSCARQ8IYS5 282 aa20.87■□□□□ 0.93
PPP4R1-219ENST00000581250 PBRM1Q86U86 1689 aa20.83■□□□□ 0.93
PPP4R1-219ENST00000581250 SNAPC4Q5SXM2 1469 aa20.83■□□□□ 0.93
PPP4R1-219ENST00000581250 ABCA10Q8WWZ4 1543 aa20.83■□□□□ 0.92
PPP4R1-219ENST00000581250 ABCA5Q8WWZ7 1642 aa20.81■□□□□ 0.92
PPP4R1-219ENST00000581250 FBLN2P98095 1184 aa20.79■□□□□ 0.92
PPP4R1-219ENST00000581250 GRIN2BQ13224 1484 aa20.79■□□□□ 0.92
PPP4R1-219ENST00000581250 GAPVD1Q14C86 1478 aa20.79■□□□□ 0.92
PPP4R1-219ENST00000581250 MAGI1Q96QZ7 1491 aaPredicted RBP20.75■□□□□ 0.91
PPP4R1-219ENST00000581250 SYNJ2O15056 1496 aa20.68■□□□□ 0.9
PPP4R1-219ENST00000581250 RIMBP3CA6NJZ7 1639 aa20.67■□□□□ 0.9
PPP4R1-219ENST00000581250 RIMBP3BA6NNM3 1639 aa20.67■□□□□ 0.9
PPP4R1-219ENST00000581250 RIMBP3Q9UFD9 1639 aa20.67■□□□□ 0.9
PPP4R1-219ENST00000581250 CHMP7Q8WUX9 453 aaPredicted RBP20.66■□□□□ 0.9
PPP4R1-219ENST00000581250 TRIM41Q8WV44 630 aa20.64■□□□□ 0.89
PPP4R1-219ENST00000581250 ADAMTS12P58397 1594 aa20.63■□□□□ 0.89
PPP4R1-219ENST00000581250 ARHGEF11O15085 1522 aa20.63■□□□□ 0.89
PPP4R1-219ENST00000581250 CLASP1Q7Z460 1538 aa20.59■□□□□ 0.89
PPP4R1-219ENST00000581250 ERICH3Q5RHP9 1530 aa20.58■□□□□ 0.88
PPP4R1-219ENST00000581250 GRIN2AQ12879 1464 aa20.54■□□□□ 0.88
PPP4R1-219ENST00000581250 FHAD1B1AJZ9 1412 aa20.52■□□□□ 0.87
PPP4R1-219ENST00000581250 CEP170Q5SW79 1584 aa20.49■□□□□ 0.87
PPP4R1-219ENST00000581250 KIF27Q86VH2 1401 aa20.46■□□□□ 0.87
PPP4R1-219ENST00000581250 ARAP1Q96P48 1450 aa20.46■□□□□ 0.87
PPP4R1-219ENST00000581250 NUP160Q12769 1436 aa20.44■□□□□ 0.86
PPP4R1-219ENST00000581250 CUL7Q14999 1698 aa20.4■□□□□ 0.86
PPP4R1-219ENST00000581250 CYB5RLQ6IPT4 315 aa20.4■□□□□ 0.86
PPP4R1-219ENST00000581250 IGF1RP08069 1367 aa20.38■□□□□ 0.85
PPP4R1-219ENST00000581250 ERCC6L2Q5T890 1561 aa20.34■□□□□ 0.85
PPP4R1-219ENST00000581250 RUSC2Q8N2Y8 1516 aa20.33■□□□□ 0.85
PPP4R1-219ENST00000581250 SHROOM2Q13796 1616 aa20.33■□□□□ 0.84
PPP4R1-219ENST00000581250 CARMIL1Q5VZK9 1371 aa20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms