RNA–Protein interactions for RNA: ENST00000581014.1

CDC42EP4-206, Transcript of CDC42 effector protein 4, humanhuman

TSL 5 BASIC

Gene CDC42EP4, Length 737 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42EP4-206ENST00000581014 NISCHQ9Y2I1 1504 aa41.86■■■■■ 4.29
CDC42EP4-206ENST00000581014 CCDC180Q9P1Z9 1646 aa37.36■■■■□ 3.57
CDC42EP4-206ENST00000581014 ABCC9O60706 1549 aa37.05■■■■□ 3.52
CDC42EP4-206ENST00000581014 RB1CC1Q8TDY2 1594 aa35.39■■■■□ 3.26
CDC42EP4-206ENST00000581014 NACADO15069 1562 aa35.24■■■■□ 3.23
CDC42EP4-206ENST00000581014 DCAF8L2P0C7V8 631 aa35.04■■■■□ 3.2
CDC42EP4-206ENST00000581014 MYO15BQ96JP2 1530 aa35.01■■■■□ 3.19
CDC42EP4-206ENST00000581014 ZCCHC6Q5VYS8 1495 aaKnown RBP34.79■■■■□ 3.16
CDC42EP4-206ENST00000581014 UNC13AQ9UPW8 1703 aa34.78■■■■□ 3.16
CDC42EP4-206ENST00000581014 DCAF1Q9Y4B6 1507 aa34.69■■■■□ 3.14
CDC42EP4-206ENST00000581014 DNAJC5BQ9UF47 199 aa34.46■■■■□ 3.11
CDC42EP4-206ENST00000581014 PABPN1Q86U42 306 aaKnown RBP eCLIP34.42■■■■□ 3.1
CDC42EP4-206ENST00000581014 BICRAQ9NZM4 1560 aa34.36■■■■□ 3.09
CDC42EP4-206ENST00000581014 SCRIBQ14160 1630 aa34.02■■■■□ 3.04
CDC42EP4-206ENST00000581014 SHROOM4Q9ULL8 1493 aa33.99■■■■□ 3.03
CDC42EP4-206ENST00000581014 CC2D2AQ9P2K1 1620 aa33.54■■■□□ 2.96
CDC42EP4-206ENST00000581014 EIF4G1Q04637 1599 aaKnown RBP33.5■■■□□ 2.95
CDC42EP4-206ENST00000581014 CECR2Q9BXF3 1484 aa33.34■■■□□ 2.93
CDC42EP4-206ENST00000581014 NCAPD3P42695 1498 aa32.59■■■□□ 2.81
CDC42EP4-206ENST00000581014 ATAD2BQ9ULI0 1458 aa32.49■■■□□ 2.79
CDC42EP4-206ENST00000581014 SMARCA4P51532 1647 aa32.49■■■□□ 2.79
CDC42EP4-206ENST00000581014 BAZ1AQ9NRL2 1556 aaPredicted RBP32.45■■■□□ 2.79
CDC42EP4-206ENST00000581014 SMARCA2P51531 1590 aa32.41■■■□□ 2.78
CDC42EP4-206ENST00000581014 HMGXB3Q12766 1538 aa32.32■■■□□ 2.76
CDC42EP4-206ENST00000581014 PEG3Q9GZU2 1588 aa32.28■■■□□ 2.76
CDC42EP4-206ENST00000581014 MROH2BQ7Z745 1585 aa32.22■■■□□ 2.75
CDC42EP4-206ENST00000581014 BAZ1BQ9UIG0 1483 aaKnown RBP32.16■■■□□ 2.74
CDC42EP4-206ENST00000581014 ERCC6Q03468 1493 aa31.98■■■□□ 2.71
CDC42EP4-206ENST00000581014 NESP48681 1621 aa31.88■■■□□ 2.69
CDC42EP4-206ENST00000581014 CUX2O14529 1486 aa31.86■■■□□ 2.69
CDC42EP4-206ENST00000581014 RSF1Q96T23 1441 aaPredicted RBP31.78■■■□□ 2.68
CDC42EP4-206ENST00000581014 WIZO95785 1651 aa31.76■■■□□ 2.68
CDC42EP4-206ENST00000581014 LAMC3Q9Y6N6 1575 aa31.73■■■□□ 2.67
CDC42EP4-206ENST00000581014 THOC2Q8NI27 1593 aaKnown RBP31.64■■■□□ 2.65
CDC42EP4-206ENST00000581014 KIF21AQ7Z4S6 1674 aa31.64■■■□□ 2.65
CDC42EP4-206ENST00000581014 CADPSQ9ULU8 1353 aa31.6■■■□□ 2.65
CDC42EP4-206ENST00000581014 PDS5BQ9NTI5 1447 aa31.55■■■□□ 2.64
CDC42EP4-206ENST00000581014 DNAJC5Q9H3Z4 198 aa31.51■■■□□ 2.63
CDC42EP4-206ENST00000581014 TOP2AP11388 1531 aaKnown RBP31.49■■■□□ 2.63
CDC42EP4-206ENST00000581014 CFTRP13569 1480 aa31.33■■■□□ 2.61
CDC42EP4-206ENST00000581014 MRC2Q9UBG0 1479 aa31.22■■■□□ 2.59
CDC42EP4-206ENST00000581014 WDR62O43379 1518 aa31.18■■■□□ 2.58
CDC42EP4-206ENST00000581014 FANCD2Q9BXW9 1451 aa31.17■■■□□ 2.58
CDC42EP4-206ENST00000581014 CCDC88BA6NC98 1476 aa31.15■■■□□ 2.58
CDC42EP4-206ENST00000581014 CEP164Q9UPV0 1460 aa31.14■■■□□ 2.58
CDC42EP4-206ENST00000581014 PRDM2Q13029 1718 aa31.1■■■□□ 2.57
CDC42EP4-206ENST00000581014 URB2Q14146 1524 aaKnown RBP30.87■■■□□ 2.53
CDC42EP4-206ENST00000581014 ABCC8Q09428 1581 aa30.66■■■□□ 2.5
CDC42EP4-206ENST00000581014 TOPBP1Q92547 1522 aa30.63■■■□□ 2.49
CDC42EP4-206ENST00000581014 SUPT5HO00267 1087 aaKnown RBP30.6■■■□□ 2.49
CDC42EP4-206ENST00000581014 IFT140Q96RY7 1462 aa30.56■■■□□ 2.48
CDC42EP4-206ENST00000581014 DNMBPQ6XZF7 1577 aa30.54■■■□□ 2.48
CDC42EP4-206ENST00000581014 ZNF608Q9ULD9 1512 aaPredicted RBP30.42■■■□□ 2.46
CDC42EP4-206ENST00000581014 EIF4G3O43432 1585 aaKnown RBP30.39■■■□□ 2.46
CDC42EP4-206ENST00000581014 POLA1P09884 1462 aaPredicted RBP30.35■■■□□ 2.45
CDC42EP4-206ENST00000581014 OSCARQ8IYS5 282 aa30.33■■■□□ 2.45
CDC42EP4-206ENST00000581014 TARBP1Q13395 1621 aaKnown RBP30.31■■■□□ 2.44
CDC42EP4-206ENST00000581014 TRIM41Q8WV44 630 aa30.27■■■□□ 2.44
CDC42EP4-206ENST00000581014 CUX1P39880 1505 aa30.24■■■□□ 2.43
CDC42EP4-206ENST00000581014 SOGA1O94964 1423 aa30.23■■■□□ 2.43
CDC42EP4-206ENST00000581014 AQRO60306 1485 aaKnown RBP eCLIP30.2■■■□□ 2.43
CDC42EP4-206ENST00000581014 FGD5Q6ZNL6 1462 aa30.19■■■□□ 2.42
CDC42EP4-206ENST00000581014 RAD54L2Q9Y4B4 1467 aa30.19■■■□□ 2.42
CDC42EP4-206ENST00000581014 CHD1O14646 1710 aa30.19■■■□□ 2.42
CDC42EP4-206ENST00000581014 RIMBP3CA6NJZ7 1639 aa30.11■■■□□ 2.41
CDC42EP4-206ENST00000581014 RIMBP3BA6NNM3 1639 aa30.11■■■□□ 2.41
CDC42EP4-206ENST00000581014 RIMBP3Q9UFD9 1639 aa30.11■■■□□ 2.41
CDC42EP4-206ENST00000581014 TDRD9Q8NDG6 1382 aaKnown RBP30.1■■■□□ 2.41
CDC42EP4-206ENST00000581014 WDR97A6NE52 1622 aa30.08■■■□□ 2.41
CDC42EP4-206ENST00000581014 ARHGEF11O15085 1522 aa29.97■■■□□ 2.39
CDC42EP4-206ENST00000581014 WRNQ14191 1432 aaPredicted RBP eCLIP29.95■■■□□ 2.38
CDC42EP4-206ENST00000581014 ABCA10Q8WWZ4 1543 aa29.94■■■□□ 2.38
CDC42EP4-206ENST00000581014 GRIN2BQ13224 1484 aa29.93■■■□□ 2.38
CDC42EP4-206ENST00000581014 SNAPC4Q5SXM2 1469 aa29.9■■■□□ 2.38
CDC42EP4-206ENST00000581014 PBRM1Q86U86 1689 aa29.9■■■□□ 2.38
CDC42EP4-206ENST00000581014 MAGI1Q96QZ7 1491 aaPredicted RBP29.89■■■□□ 2.38
CDC42EP4-206ENST00000581014 FBLN2P98095 1184 aa29.88■■■□□ 2.37
CDC42EP4-206ENST00000581014 TOP2BQ02880 1626 aa29.88■■■□□ 2.37
CDC42EP4-206ENST00000581014 GAPVD1Q14C86 1478 aa29.87■■■□□ 2.37
CDC42EP4-206ENST00000581014 BIVM-ERCC5R4GMW8 1640 aa29.84■■■□□ 2.37
CDC42EP4-206ENST00000581014 SYNJ1O43426 1573 aa29.81■■■□□ 2.36
CDC42EP4-206ENST00000581014 CHMP7Q8WUX9 453 aaPredicted RBP29.8■■■□□ 2.36
CDC42EP4-206ENST00000581014 SYNJ2O15056 1496 aa29.78■■■□□ 2.36
CDC42EP4-206ENST00000581014 ABCA5Q8WWZ7 1642 aa29.78■■■□□ 2.36
CDC42EP4-206ENST00000581014 CLASP1Q7Z460 1538 aa29.73■■■□□ 2.35
CDC42EP4-206ENST00000581014 ARAP1Q96P48 1450 aa29.68■■■□□ 2.34
CDC42EP4-206ENST00000581014 CYB5RLQ6IPT4 315 aa29.6■■■□□ 2.33
CDC42EP4-206ENST00000581014 ERICH3Q5RHP9 1530 aa29.55■■■□□ 2.32
CDC42EP4-206ENST00000581014 ADAMTS12P58397 1594 aa29.54■■■□□ 2.32
CDC42EP4-206ENST00000581014 FHAD1B1AJZ9 1412 aa29.54■■■□□ 2.32
CDC42EP4-206ENST00000581014 GRIN2AQ12879 1464 aa29.52■■■□□ 2.32
CDC42EP4-206ENST00000581014 NUP160Q12769 1436 aa29.46■■■□□ 2.31
CDC42EP4-206ENST00000581014 CEP170Q5SW79 1584 aa29.39■■■□□ 2.29
CDC42EP4-206ENST00000581014 KIF27Q86VH2 1401 aa29.37■■■□□ 2.29
CDC42EP4-206ENST00000581014 IGF1RP08069 1367 aa29.34■■■□□ 2.29
CDC42EP4-206ENST00000581014 ERCC6L2Q5T890 1561 aa29.28■■■□□ 2.28
CDC42EP4-206ENST00000581014 SHROOM2Q13796 1616 aa29.27■■■□□ 2.28
CDC42EP4-206ENST00000581014 TRHP20396 242 aaPredicted RBP29.24■■■□□ 2.27
CDC42EP4-206ENST00000581014 JPH4Q96JJ6 628 aa29.16■■■□□ 2.26
CDC42EP4-206ENST00000581014 CUL7Q14999 1698 aa29.14■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms