RNA–Protein interactions for RNA: ENST00000578314.1

VAPA-205, Transcript of VAMP associated protein A, humanhuman

TSL 3

Gene VAPA, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-205ENST00000578314 NISCHQ9Y2I1 1504 aa56.54■■■■■ 6.64
VAPA-205ENST00000578314 CCDC180Q9P1Z9 1646 aa50.35■■■■■ 5.65
VAPA-205ENST00000578314 ABCC9O60706 1549 aa50.03■■■■■ 5.6
VAPA-205ENST00000578314 RB1CC1Q8TDY2 1594 aa47.78■■■■■ 5.24
VAPA-205ENST00000578314 NACADO15069 1562 aa47.54■■■■■ 5.2
VAPA-205ENST00000578314 DCAF8L2P0C7V8 631 aa47.46■■■■■ 5.19
VAPA-205ENST00000578314 MYO15BQ96JP2 1530 aa47.16■■■■■ 5.14
VAPA-205ENST00000578314 ZCCHC6Q5VYS8 1495 aaKnown RBP46.98■■■■■ 5.11
VAPA-205ENST00000578314 DCAF1Q9Y4B6 1507 aa46.77■■■■■ 5.08
VAPA-205ENST00000578314 UNC13AQ9UPW8 1703 aa46.71■■■■■ 5.07
VAPA-205ENST00000578314 DNAJC5BQ9UF47 199 aa46.67■■■■■ 5.06
VAPA-205ENST00000578314 PABPN1Q86U42 306 aaKnown RBP eCLIP46.6■■■■■ 5.05
VAPA-205ENST00000578314 BICRAQ9NZM4 1560 aa46.37■■■■■ 5.01
VAPA-205ENST00000578314 SCRIBQ14160 1630 aa45.91■■■■■ 4.94
VAPA-205ENST00000578314 SHROOM4Q9ULL8 1493 aa45.8■■■■■ 4.92
VAPA-205ENST00000578314 CC2D2AQ9P2K1 1620 aa45.23■■■■■ 4.83
VAPA-205ENST00000578314 EIF4G1Q04637 1599 aaKnown RBP45.21■■■■■ 4.83
VAPA-205ENST00000578314 CECR2Q9BXF3 1484 aa45.05■■■■■ 4.8
VAPA-205ENST00000578314 NCAPD3P42695 1498 aa43.95■■■■■ 4.63
VAPA-205ENST00000578314 SMARCA4P51532 1647 aa43.9■■■■■ 4.62
VAPA-205ENST00000578314 ATAD2BQ9ULI0 1458 aa43.87■■■■■ 4.61
VAPA-205ENST00000578314 BAZ1AQ9NRL2 1556 aaPredicted RBP43.82■■■■■ 4.61
VAPA-205ENST00000578314 SMARCA2P51531 1590 aa43.74■■■■■ 4.59
VAPA-205ENST00000578314 HMGXB3Q12766 1538 aa43.6■■■■■ 4.57
VAPA-205ENST00000578314 MROH2BQ7Z745 1585 aa43.55■■■■■ 4.56
VAPA-205ENST00000578314 PEG3Q9GZU2 1588 aa43.53■■■■■ 4.56
VAPA-205ENST00000578314 BAZ1BQ9UIG0 1483 aaKnown RBP43.44■■■■■ 4.54
VAPA-205ENST00000578314 ERCC6Q03468 1493 aa43.19■■■■■ 4.5
VAPA-205ENST00000578314 NESP48681 1621 aa43.06■■■■■ 4.48
VAPA-205ENST00000578314 CUX2O14529 1486 aa43.04■■■■■ 4.48
VAPA-205ENST00000578314 WIZO95785 1651 aa42.98■■■■■ 4.47
VAPA-205ENST00000578314 RSF1Q96T23 1441 aaPredicted RBP42.94■■■■■ 4.46
VAPA-205ENST00000578314 LAMC3Q9Y6N6 1575 aa42.84■■■■■ 4.45
VAPA-205ENST00000578314 DNAJC5Q9H3Z4 198 aa42.68■■■■■ 4.42
VAPA-205ENST00000578314 CADPSQ9ULU8 1353 aa42.65■■■■■ 4.42
VAPA-205ENST00000578314 THOC2Q8NI27 1593 aaKnown RBP42.61■■■■■ 4.41
VAPA-205ENST00000578314 PDS5BQ9NTI5 1447 aa42.57■■■■■ 4.41
VAPA-205ENST00000578314 TOP2AP11388 1531 aaKnown RBP42.54■■■■■ 4.4
VAPA-205ENST00000578314 KIF21AQ7Z4S6 1674 aa42.54■■■■■ 4.4
VAPA-205ENST00000578314 CFTRP13569 1480 aa42.28■■■■■ 4.36
VAPA-205ENST00000578314 MRC2Q9UBG0 1479 aa42.18■■■■■ 4.34
VAPA-205ENST00000578314 CCDC88BA6NC98 1476 aa42.11■■■■■ 4.33
VAPA-205ENST00000578314 FANCD2Q9BXW9 1451 aa42.1■■■■■ 4.33
VAPA-205ENST00000578314 WDR62O43379 1518 aa42.09■■■■■ 4.33
VAPA-205ENST00000578314 CEP164Q9UPV0 1460 aa42.07■■■■■ 4.33
VAPA-205ENST00000578314 PRDM2Q13029 1718 aa41.74■■■■■ 4.27
VAPA-205ENST00000578314 URB2Q14146 1524 aaKnown RBP41.69■■■■■ 4.27
VAPA-205ENST00000578314 SUPT5HO00267 1087 aaKnown RBP41.49■■■■■ 4.23
VAPA-205ENST00000578314 TOPBP1Q92547 1522 aa41.36■■■■■ 4.21
VAPA-205ENST00000578314 ABCC8Q09428 1581 aa41.36■■■■■ 4.21
VAPA-205ENST00000578314 DNMBPQ6XZF7 1577 aa41.25■■■■■ 4.19
VAPA-205ENST00000578314 IFT140Q96RY7 1462 aa41.24■■■■■ 4.19
VAPA-205ENST00000578314 ZNF608Q9ULD9 1512 aaPredicted RBP41.12■■■■■ 4.17
VAPA-205ENST00000578314 OSCARQ8IYS5 282 aa41.09■■■■■ 4.17
VAPA-205ENST00000578314 POLA1P09884 1462 aaPredicted RBP40.99■■■■■ 4.15
VAPA-205ENST00000578314 EIF4G3O43432 1585 aaKnown RBP40.93■■■■■ 4.14
VAPA-205ENST00000578314 TARBP1Q13395 1621 aaKnown RBP40.91■■■■■ 4.14
VAPA-205ENST00000578314 TRIM41Q8WV44 630 aa40.9■■■■■ 4.14
VAPA-205ENST00000578314 CUX1P39880 1505 aa40.88■■■■■ 4.13
VAPA-205ENST00000578314 SOGA1O94964 1423 aa40.85■■■■■ 4.13
VAPA-205ENST00000578314 RAD54L2Q9Y4B4 1467 aa40.83■■■■■ 4.13
VAPA-205ENST00000578314 AQRO60306 1485 aaKnown RBP eCLIP40.82■■■■■ 4.12
VAPA-205ENST00000578314 FGD5Q6ZNL6 1462 aa40.8■■■■■ 4.12
VAPA-205ENST00000578314 TDRD9Q8NDG6 1382 aaKnown RBP40.69■■■■■ 4.1
VAPA-205ENST00000578314 CHD1O14646 1710 aa40.57■■■■■ 4.09
VAPA-205ENST00000578314 WDR97A6NE52 1622 aa40.56■■■■■ 4.08
VAPA-205ENST00000578314 RIMBP3CA6NJZ7 1639 aa40.56■■■■■ 4.08
VAPA-205ENST00000578314 RIMBP3BA6NNM3 1639 aa40.56■■■■■ 4.08
VAPA-205ENST00000578314 RIMBP3Q9UFD9 1639 aa40.56■■■■■ 4.08
VAPA-205ENST00000578314 WRNQ14191 1432 aaPredicted RBP eCLIP40.47■■■■■ 4.07
VAPA-205ENST00000578314 ARHGEF11O15085 1522 aa40.45■■■■■ 4.07
VAPA-205ENST00000578314 FBLN2P98095 1184 aa40.42■■■■■ 4.06
VAPA-205ENST00000578314 ABCA10Q8WWZ4 1543 aa40.42■■■■■ 4.06
VAPA-205ENST00000578314 GRIN2BQ13224 1484 aa40.41■■■■■ 4.06
VAPA-205ENST00000578314 SNAPC4Q5SXM2 1469 aa40.39■■■■■ 4.06
VAPA-205ENST00000578314 TOP2BQ02880 1626 aa40.38■■■■■ 4.05
VAPA-205ENST00000578314 GAPVD1Q14C86 1478 aa40.34■■■■■ 4.05
VAPA-205ENST00000578314 MAGI1Q96QZ7 1491 aaPredicted RBP40.33■■■■■ 4.05
VAPA-205ENST00000578314 BIVM-ERCC5R4GMW8 1640 aa40.33■■■■■ 4.05
VAPA-205ENST00000578314 SYNJ1O43426 1573 aa40.32■■■■■ 4.05
VAPA-205ENST00000578314 CHMP7Q8WUX9 453 aaPredicted RBP40.27■■■■■ 4.04
VAPA-205ENST00000578314 ABCA5Q8WWZ7 1642 aa40.22■■■■■ 4.03
VAPA-205ENST00000578314 PBRM1Q86U86 1689 aa40.2■■■■■ 4.03
VAPA-205ENST00000578314 SYNJ2O15056 1496 aa40.19■■■■■ 4.03
VAPA-205ENST00000578314 CLASP1Q7Z460 1538 aa40.12■■■■■ 4.01
VAPA-205ENST00000578314 CYB5RLQ6IPT4 315 aa40.1■■■■■ 4.01
VAPA-205ENST00000578314 ARAP1Q96P48 1450 aa40.07■■■■■ 4.01
VAPA-205ENST00000578314 ERICH3Q5RHP9 1530 aa39.91■■■■□ 3.98
VAPA-205ENST00000578314 FHAD1B1AJZ9 1412 aa39.88■■■■□ 3.97
VAPA-205ENST00000578314 ADAMTS12P58397 1594 aa39.86■■■■□ 3.97
VAPA-205ENST00000578314 GRIN2AQ12879 1464 aa39.86■■■■□ 3.97
VAPA-205ENST00000578314 NUP160Q12769 1436 aa39.74■■■■□ 3.95
VAPA-205ENST00000578314 KIF27Q86VH2 1401 aa39.66■■■■□ 3.94
VAPA-205ENST00000578314 CEP170Q5SW79 1584 aa39.65■■■■□ 3.94
VAPA-205ENST00000578314 IGF1RP08069 1367 aa39.63■■■■□ 3.93
VAPA-205ENST00000578314 TRHP20396 242 aaPredicted RBP39.56■■■■□ 3.92
VAPA-205ENST00000578314 ERCC6L2Q5T890 1561 aa39.5■■■■□ 3.91
VAPA-205ENST00000578314 SHROOM2Q13796 1616 aa39.47■■■■□ 3.91
VAPA-205ENST00000578314 JPH4Q96JJ6 628 aa39.39■■■■□ 3.9
VAPA-205ENST00000578314 CUL7Q14999 1698 aa39.38■■■■□ 3.89
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms