RNA–Protein interactions for RNA: ENST00000578234.1

SMARCD2-207, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2, humanhuman

TSL 2

Gene SMARCD2, Length 595 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD2-207ENST00000578234 NISCHQ9Y2I1 1504 aa31.46■■■□□ 2.63
SMARCD2-207ENST00000578234 CCDC180Q9P1Z9 1646 aa28.21■■■□□ 2.11
SMARCD2-207ENST00000578234 ABCC9O60706 1549 aa28.19■■■□□ 2.1
SMARCD2-207ENST00000578234 RB1CC1Q8TDY2 1594 aa26.86■■□□□ 1.89
SMARCD2-207ENST00000578234 NACADO15069 1562 aa26.7■■□□□ 1.86
SMARCD2-207ENST00000578234 DCAF8L2P0C7V8 631 aa26.64■■□□□ 1.86
SMARCD2-207ENST00000578234 DNAJC5BQ9UF47 199 aa26.49■■□□□ 1.83
SMARCD2-207ENST00000578234 MYO15BQ96JP2 1530 aa26.37■■□□□ 1.81
SMARCD2-207ENST00000578234 PABPN1Q86U42 306 aaKnown RBP eCLIP26.26■■□□□ 1.79
SMARCD2-207ENST00000578234 UNC13AQ9UPW8 1703 aa26.22■■□□□ 1.79
SMARCD2-207ENST00000578234 BICRAQ9NZM4 1560 aa26.07■■□□□ 1.76
SMARCD2-207ENST00000578234 ZCCHC6Q5VYS8 1495 aaKnown RBP26.05■■□□□ 1.76
SMARCD2-207ENST00000578234 DCAF1Q9Y4B6 1507 aa26.01■■□□□ 1.75
SMARCD2-207ENST00000578234 SHROOM4Q9ULL8 1493 aa25.77■■□□□ 1.72
SMARCD2-207ENST00000578234 SCRIBQ14160 1630 aa25.66■■□□□ 1.7
SMARCD2-207ENST00000578234 CC2D2AQ9P2K1 1620 aa25.48■■□□□ 1.67
SMARCD2-207ENST00000578234 EIF4G1Q04637 1599 aaKnown RBP25.43■■□□□ 1.66
SMARCD2-207ENST00000578234 CECR2Q9BXF3 1484 aa25.41■■□□□ 1.66
SMARCD2-207ENST00000578234 NCAPD3P42695 1498 aa24.67■■□□□ 1.54
SMARCD2-207ENST00000578234 ATAD2BQ9ULI0 1458 aa24.56■■□□□ 1.52
SMARCD2-207ENST00000578234 SMARCA4P51532 1647 aa24.51■■□□□ 1.51
SMARCD2-207ENST00000578234 SMARCA2P51531 1590 aa24.5■■□□□ 1.51
SMARCD2-207ENST00000578234 HMGXB3Q12766 1538 aa24.45■■□□□ 1.5
SMARCD2-207ENST00000578234 BAZ1AQ9NRL2 1556 aaPredicted RBP24.42■■□□□ 1.5
SMARCD2-207ENST00000578234 DNAJC5Q9H3Z4 198 aa24.36■■□□□ 1.49
SMARCD2-207ENST00000578234 ERCC6Q03468 1493 aa24.35■■□□□ 1.49
SMARCD2-207ENST00000578234 CUX2O14529 1486 aa24.33■■□□□ 1.49
SMARCD2-207ENST00000578234 BAZ1BQ9UIG0 1483 aaKnown RBP24.32■■□□□ 1.48
SMARCD2-207ENST00000578234 PEG3Q9GZU2 1588 aa24.31■■□□□ 1.48
SMARCD2-207ENST00000578234 NESP48681 1621 aa24.22■■□□□ 1.47
SMARCD2-207ENST00000578234 MROH2BQ7Z745 1585 aa24.22■■□□□ 1.47
SMARCD2-207ENST00000578234 LAMC3Q9Y6N6 1575 aa24.09■■□□□ 1.45
SMARCD2-207ENST00000578234 THOC2Q8NI27 1593 aaKnown RBP23.97■■□□□ 1.43
SMARCD2-207ENST00000578234 PDS5BQ9NTI5 1447 aa23.96■■□□□ 1.43
SMARCD2-207ENST00000578234 WIZO95785 1651 aa23.92■■□□□ 1.42
SMARCD2-207ENST00000578234 CADPSQ9ULU8 1353 aa23.91■■□□□ 1.42
SMARCD2-207ENST00000578234 KIF21AQ7Z4S6 1674 aa23.89■■□□□ 1.42
SMARCD2-207ENST00000578234 RSF1Q96T23 1441 aaPredicted RBP23.75■■□□□ 1.39
SMARCD2-207ENST00000578234 MRC2Q9UBG0 1479 aa23.72■■□□□ 1.39
SMARCD2-207ENST00000578234 WDR62O43379 1518 aa23.66■■□□□ 1.38
SMARCD2-207ENST00000578234 CFTRP13569 1480 aa23.63■■□□□ 1.37
SMARCD2-207ENST00000578234 CEP164Q9UPV0 1460 aa23.63■■□□□ 1.37
SMARCD2-207ENST00000578234 TOP2AP11388 1531 aaKnown RBP23.63■■□□□ 1.37
SMARCD2-207ENST00000578234 FANCD2Q9BXW9 1451 aa23.61■■□□□ 1.37
SMARCD2-207ENST00000578234 TRIM41Q8WV44 630 aa23.49■■□□□ 1.35
SMARCD2-207ENST00000578234 URB2Q14146 1524 aaKnown RBP23.41■■□□□ 1.34
SMARCD2-207ENST00000578234 CCDC88BA6NC98 1476 aa23.37■■□□□ 1.33
SMARCD2-207ENST00000578234 PRDM2Q13029 1718 aa23.35■■□□□ 1.33
SMARCD2-207ENST00000578234 OSCARQ8IYS5 282 aa23.26■■□□□ 1.31
SMARCD2-207ENST00000578234 IFT140Q96RY7 1462 aa23.17■■□□□ 1.3
SMARCD2-207ENST00000578234 ABCC8Q09428 1581 aa23.16■■□□□ 1.3
SMARCD2-207ENST00000578234 TOPBP1Q92547 1522 aa23.16■■□□□ 1.3
SMARCD2-207ENST00000578234 ZNF608Q9ULD9 1512 aaPredicted RBP23.11■■□□□ 1.29
SMARCD2-207ENST00000578234 DNMBPQ6XZF7 1577 aa23.07■■□□□ 1.28
SMARCD2-207ENST00000578234 EIF4G3O43432 1585 aaKnown RBP22.97■■□□□ 1.27
SMARCD2-207ENST00000578234 TARBP1Q13395 1621 aaKnown RBP22.95■■□□□ 1.26
SMARCD2-207ENST00000578234 POLA1P09884 1462 aaPredicted RBP22.92■■□□□ 1.26
SMARCD2-207ENST00000578234 AQRO60306 1485 aaKnown RBP eCLIP22.92■■□□□ 1.26
SMARCD2-207ENST00000578234 RIMBP3CA6NJZ7 1639 aa22.89■■□□□ 1.25
SMARCD2-207ENST00000578234 RIMBP3BA6NNM3 1639 aa22.89■■□□□ 1.25
SMARCD2-207ENST00000578234 RIMBP3Q9UFD9 1639 aa22.89■■□□□ 1.25
SMARCD2-207ENST00000578234 FBLN2P98095 1184 aa22.86■■□□□ 1.25
SMARCD2-207ENST00000578234 SOGA1O94964 1423 aa22.84■■□□□ 1.25
SMARCD2-207ENST00000578234 RAD54L2Q9Y4B4 1467 aa22.83■■□□□ 1.25
SMARCD2-207ENST00000578234 ARHGEF11O15085 1522 aa22.82■■□□□ 1.24
SMARCD2-207ENST00000578234 TDRD9Q8NDG6 1382 aaKnown RBP22.79■■□□□ 1.24
SMARCD2-207ENST00000578234 CHD1O14646 1710 aa22.79■■□□□ 1.24
SMARCD2-207ENST00000578234 FGD5Q6ZNL6 1462 aa22.77■■□□□ 1.24
SMARCD2-207ENST00000578234 CUX1P39880 1505 aa22.75■■□□□ 1.23
SMARCD2-207ENST00000578234 WDR97A6NE52 1622 aa22.74■■□□□ 1.23
SMARCD2-207ENST00000578234 CYB5RLQ6IPT4 315 aa22.73■■□□□ 1.23
SMARCD2-207ENST00000578234 SUPT5HO00267 1087 aaKnown RBP22.68■■□□□ 1.22
SMARCD2-207ENST00000578234 SNAPC4Q5SXM2 1469 aa22.66■■□□□ 1.22
SMARCD2-207ENST00000578234 MAGI1Q96QZ7 1491 aaPredicted RBP22.64■■□□□ 1.21
SMARCD2-207ENST00000578234 GRIN2BQ13224 1484 aa22.63■■□□□ 1.21
SMARCD2-207ENST00000578234 CHMP7Q8WUX9 453 aaPredicted RBP22.63■■□□□ 1.21
SMARCD2-207ENST00000578234 TRHP20396 242 aaPredicted RBP22.62■■□□□ 1.21
SMARCD2-207ENST00000578234 ARAP1Q96P48 1450 aa22.6■■□□□ 1.21
SMARCD2-207ENST00000578234 SYNJ2O15056 1496 aa22.56■■□□□ 1.2
SMARCD2-207ENST00000578234 CLASP1Q7Z460 1538 aa22.56■■□□□ 1.2
SMARCD2-207ENST00000578234 SYNJ1O43426 1573 aa22.55■■□□□ 1.2
SMARCD2-207ENST00000578234 GAPVD1Q14C86 1478 aa22.55■■□□□ 1.2
SMARCD2-207ENST00000578234 ABCA10Q8WWZ4 1543 aa22.54■■□□□ 1.2
SMARCD2-207ENST00000578234 PBRM1Q86U86 1689 aa22.5■■□□□ 1.19
SMARCD2-207ENST00000578234 ABCA5Q8WWZ7 1642 aa22.48■■□□□ 1.19
SMARCD2-207ENST00000578234 WRNQ14191 1432 aaPredicted RBP eCLIP22.46■■□□□ 1.19
SMARCD2-207ENST00000578234 TOP2BQ02880 1626 aa22.4■■□□□ 1.18
SMARCD2-207ENST00000578234 BIVM-ERCC5R4GMW8 1640 aa22.39■■□□□ 1.17
SMARCD2-207ENST00000578234 GRIN2AQ12879 1464 aa22.34■■□□□ 1.17
SMARCD2-207ENST00000578234 ADAMTS12P58397 1594 aa22.29■■□□□ 1.16
SMARCD2-207ENST00000578234 FHAD1B1AJZ9 1412 aa22.28■■□□□ 1.16
SMARCD2-207ENST00000578234 NUP160Q12769 1436 aa22.27■■□□□ 1.16
SMARCD2-207ENST00000578234 ERICH3Q5RHP9 1530 aa22.26■■□□□ 1.15
SMARCD2-207ENST00000578234 CEP170Q5SW79 1584 aa22.24■■□□□ 1.15
SMARCD2-207ENST00000578234 ERCC6L2Q5T890 1561 aa22.19■■□□□ 1.14
SMARCD2-207ENST00000578234 SHROOM2Q13796 1616 aa22.17■■□□□ 1.14
SMARCD2-207ENST00000578234 AEBP2Q6ZN18 517 aaPredicted RBP22.08■■□□□ 1.13
SMARCD2-207ENST00000578234 JPH4Q96JJ6 628 aa22.08■■□□□ 1.13
SMARCD2-207ENST00000578234 PRG4Q92954 1404 aaPredicted RBP22.06■■□□□ 1.12
SMARCD2-207ENST00000578234 IGF1RP08069 1367 aa21.99■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms