RNA–Protein interactions for RNA: ENST00000577561.1

NUP85-205, Transcript of nucleoporin 85, humanhuman

TSL 3

Gene NUP85, Length 524 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP85-205ENST00000577561 NISCHQ9Y2I1 1504 aa47.57■■■■■ 5.21
NUP85-205ENST00000577561 CCDC180Q9P1Z9 1646 aa42.32■■■■■ 4.37
NUP85-205ENST00000577561 ABCC9O60706 1549 aa41.59■■■■■ 4.25
NUP85-205ENST00000577561 RB1CC1Q8TDY2 1594 aa39.93■■■■□ 3.98
NUP85-205ENST00000577561 NACADO15069 1562 aa39.86■■■■□ 3.97
NUP85-205ENST00000577561 DCAF8L2P0C7V8 631 aa39.83■■■■□ 3.97
NUP85-205ENST00000577561 MYO15BQ96JP2 1530 aa39.6■■■■□ 3.93
NUP85-205ENST00000577561 ZCCHC6Q5VYS8 1495 aaKnown RBP39.59■■■■□ 3.93
NUP85-205ENST00000577561 DCAF1Q9Y4B6 1507 aa39.36■■■■□ 3.89
NUP85-205ENST00000577561 UNC13AQ9UPW8 1703 aa38.99■■■■□ 3.83
NUP85-205ENST00000577561 PABPN1Q86U42 306 aaKnown RBP eCLIP38.87■■■■□ 3.81
NUP85-205ENST00000577561 BICRAQ9NZM4 1560 aa38.74■■■■□ 3.79
NUP85-205ENST00000577561 SCRIBQ14160 1630 aa38.6■■■■□ 3.77
NUP85-205ENST00000577561 DNAJC5BQ9UF47 199 aa38.36■■■■□ 3.73
NUP85-205ENST00000577561 SHROOM4Q9ULL8 1493 aa38.33■■■■□ 3.73
NUP85-205ENST00000577561 EIF4G1Q04637 1599 aaKnown RBP37.72■■■■□ 3.63
NUP85-205ENST00000577561 CC2D2AQ9P2K1 1620 aa37.61■■■■□ 3.61
NUP85-205ENST00000577561 CECR2Q9BXF3 1484 aa37.4■■■■□ 3.58
NUP85-205ENST00000577561 SMARCA4P51532 1647 aa36.92■■■■□ 3.5
NUP85-205ENST00000577561 BAZ1AQ9NRL2 1556 aaPredicted RBP36.87■■■■□ 3.49
NUP85-205ENST00000577561 NCAPD3P42695 1498 aa36.81■■■■□ 3.48
NUP85-205ENST00000577561 ATAD2BQ9ULI0 1458 aa36.8■■■■□ 3.48
NUP85-205ENST00000577561 SMARCA2P51531 1590 aa36.73■■■■□ 3.47
NUP85-205ENST00000577561 MROH2BQ7Z745 1585 aa36.66■■■■□ 3.46
NUP85-205ENST00000577561 HMGXB3Q12766 1538 aa36.59■■■■□ 3.45
NUP85-205ENST00000577561 PEG3Q9GZU2 1588 aa36.58■■■■□ 3.45
NUP85-205ENST00000577561 BAZ1BQ9UIG0 1483 aaKnown RBP36.47■■■■□ 3.43
NUP85-205ENST00000577561 WIZO95785 1651 aa36.23■■■■□ 3.39
NUP85-205ENST00000577561 RSF1Q96T23 1441 aaPredicted RBP36.2■■■■□ 3.39
NUP85-205ENST00000577561 NESP48681 1621 aa35.95■■■■□ 3.35
NUP85-205ENST00000577561 ERCC6Q03468 1493 aa35.86■■■■□ 3.33
NUP85-205ENST00000577561 TOP2AP11388 1531 aaKnown RBP35.85■■■■□ 3.33
NUP85-205ENST00000577561 LAMC3Q9Y6N6 1575 aa35.84■■■■□ 3.33
NUP85-205ENST00000577561 CADPSQ9ULU8 1353 aa35.74■■■■□ 3.31
NUP85-205ENST00000577561 PDS5BQ9NTI5 1447 aa35.63■■■■□ 3.29
NUP85-205ENST00000577561 CUX2O14529 1486 aa35.55■■■■□ 3.28
NUP85-205ENST00000577561 CFTRP13569 1480 aa35.48■■■■□ 3.27
NUP85-205ENST00000577561 KIF21AQ7Z4S6 1674 aa35.48■■■■□ 3.27
NUP85-205ENST00000577561 CCDC88BA6NC98 1476 aa35.45■■■■□ 3.27
NUP85-205ENST00000577561 THOC2Q8NI27 1593 aaKnown RBP35.42■■■■□ 3.26
NUP85-205ENST00000577561 FANCD2Q9BXW9 1451 aa35.3■■■■□ 3.24
NUP85-205ENST00000577561 CEP164Q9UPV0 1460 aa35.27■■■■□ 3.24
NUP85-205ENST00000577561 MRC2Q9UBG0 1479 aa35.25■■■■□ 3.23
NUP85-205ENST00000577561 SUPT5HO00267 1087 aaKnown RBP35.17■■■■□ 3.22
NUP85-205ENST00000577561 WDR62O43379 1518 aa35.13■■■■□ 3.21
NUP85-205ENST00000577561 PRDM2Q13029 1718 aa35.12■■■■□ 3.21
NUP85-205ENST00000577561 URB2Q14146 1524 aaKnown RBP34.96■■■■□ 3.19
NUP85-205ENST00000577561 TOPBP1Q92547 1522 aa34.72■■■■□ 3.15
NUP85-205ENST00000577561 ABCC8Q09428 1581 aa34.72■■■■□ 3.15
NUP85-205ENST00000577561 DNAJC5Q9H3Z4 198 aa34.68■■■■□ 3.14
NUP85-205ENST00000577561 DNMBPQ6XZF7 1577 aa34.65■■■■□ 3.14
NUP85-205ENST00000577561 IFT140Q96RY7 1462 aa34.54■■■■□ 3.12
NUP85-205ENST00000577561 POLA1P09884 1462 aaPredicted RBP34.41■■■■□ 3.1
NUP85-205ENST00000577561 CUX1P39880 1505 aa34.4■■■■□ 3.1
NUP85-205ENST00000577561 ZNF608Q9ULD9 1512 aaPredicted RBP34.4■■■■□ 3.1
NUP85-205ENST00000577561 TARBP1Q13395 1621 aaKnown RBP34.34■■■■□ 3.09
NUP85-205ENST00000577561 FGD5Q6ZNL6 1462 aa34.3■■■■□ 3.08
NUP85-205ENST00000577561 SOGA1O94964 1423 aa34.29■■■■□ 3.08
NUP85-205ENST00000577561 RAD54L2Q9Y4B4 1467 aa34.27■■■■□ 3.08
NUP85-205ENST00000577561 EIF4G3O43432 1585 aaKnown RBP34.22■■■■□ 3.07
NUP85-205ENST00000577561 AQRO60306 1485 aaKnown RBP eCLIP34.2■■■■□ 3.065e-8■■■■□ 25.9
NUP85-205ENST00000577561 WRNQ14191 1432 aaPredicted RBP eCLIP34.13■■■■□ 3.05
NUP85-205ENST00000577561 TDRD9Q8NDG6 1382 aaKnown RBP34.11■■■■□ 3.05
NUP85-205ENST00000577561 OSCARQ8IYS5 282 aa34.09■■■■□ 3.05
NUP85-205ENST00000577561 WDR97A6NE52 1622 aa34.06■■■■□ 3.04
NUP85-205ENST00000577561 TOP2BQ02880 1626 aa34.05■■■■□ 3.04
NUP85-205ENST00000577561 BIVM-ERCC5R4GMW8 1640 aa34.03■■■■□ 3.04
NUP85-205ENST00000577561 SYNJ1O43426 1573 aa34.02■■■■□ 3.04
NUP85-205ENST00000577561 ABCA10Q8WWZ4 1543 aa33.98■■■■□ 3.03
NUP85-205ENST00000577561 GRIN2BQ13224 1484 aa33.9■■■■□ 3.02
NUP85-205ENST00000577561 GAPVD1Q14C86 1478 aa33.88■■■■□ 3.01
NUP85-205ENST00000577561 SNAPC4Q5SXM2 1469 aa33.86■■■■□ 3.01
NUP85-205ENST00000577561 ABCA5Q8WWZ7 1642 aa33.82■■■■□ 3.01
NUP85-205ENST00000577561 FBLN2P98095 1184 aa33.82■■■■□ 3
NUP85-205ENST00000577561 MAGI1Q96QZ7 1491 aaPredicted RBP33.82■■■■□ 3
NUP85-205ENST00000577561 CHD1O14646 1710 aa33.81■■■■□ 3
NUP85-205ENST00000577561 PBRM1Q86U86 1689 aa33.76■■■□□ 2.99
NUP85-205ENST00000577561 CHMP7Q8WUX9 453 aaPredicted RBP33.72■■■□□ 2.99
NUP85-205ENST00000577561 SYNJ2O15056 1496 aa33.69■■■□□ 2.98
NUP85-205ENST00000577561 ERICH3Q5RHP9 1530 aa33.56■■■□□ 2.96
NUP85-205ENST00000577561 ADAMTS12P58397 1594 aa33.51■■■□□ 2.96
NUP85-205ENST00000577561 RIMBP3CA6NJZ7 1639 aa33.5■■■□□ 2.95
NUP85-205ENST00000577561 RIMBP3BA6NNM3 1639 aa33.5■■■□□ 2.95
NUP85-205ENST00000577561 RIMBP3Q9UFD9 1639 aa33.5■■■□□ 2.95
NUP85-205ENST00000577561 ARHGEF11O15085 1522 aa33.49■■■□□ 2.95
NUP85-205ENST00000577561 FHAD1B1AJZ9 1412 aa33.49■■■□□ 2.95
NUP85-205ENST00000577561 CLASP1Q7Z460 1538 aa33.48■■■□□ 2.95
NUP85-205ENST00000577561 GRIN2AQ12879 1464 aa33.45■■■□□ 2.95
NUP85-205ENST00000577561 TRIM41Q8WV44 630 aa33.45■■■□□ 2.95
NUP85-205ENST00000577561 KIF27Q86VH2 1401 aa33.44■■■□□ 2.94
NUP85-205ENST00000577561 IGF1RP08069 1367 aa33.34■■■□□ 2.93
NUP85-205ENST00000577561 NUP160Q12769 1436 aa33.32■■■□□ 2.92
NUP85-205ENST00000577561 CEP170Q5SW79 1584 aa33.28■■■□□ 2.92
NUP85-205ENST00000577561 CYB5RLQ6IPT4 315 aa33.22■■■□□ 2.91
NUP85-205ENST00000577561 ARAP1Q96P48 1450 aa33.22■■■□□ 2.91
NUP85-205ENST00000577561 CUL7Q14999 1698 aa33.2■■■□□ 2.9
NUP85-205ENST00000577561 CARMIL1Q5VZK9 1371 aa33.13■■■□□ 2.89
NUP85-205ENST00000577561 RUSC2Q8N2Y8 1516 aa33.07■■■□□ 2.89
NUP85-205ENST00000577561 SHROOM2Q13796 1616 aa33.06■■■□□ 2.88
NUP85-205ENST00000577561 JPH4Q96JJ6 628 aa33.01■■■□□ 2.87
Retrieved 100 of 20,778 RNA–protein pairs in 88 ms