RNA–Protein interactions for RNA: ENST00000576964.5

ABR-235, Transcript of ABR, RhoGEF and GTPase activating protein, humanhuman

TSL 4

Gene ABR, Length 574 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABR-235ENST00000576964 NISCHQ9Y2I1 1504 aa25.68■■□□□ 1.7
ABR-235ENST00000576964 CCDC180Q9P1Z9 1646 aa22.78■■□□□ 1.24
ABR-235ENST00000576964 ABCC9O60706 1549 aa22.2■■□□□ 1.14
ABR-235ENST00000576964 DCAF8L2P0C7V8 631 aa21.54■■□□□ 1.04
ABR-235ENST00000576964 RB1CC1Q8TDY2 1594 aa21.43■■□□□ 1.02
ABR-235ENST00000576964 ZCCHC6Q5VYS8 1495 aaKnown RBP21.42■■□□□ 1.02
ABR-235ENST00000576964 NACADO15069 1562 aa21.41■■□□□ 1.02
ABR-235ENST00000576964 MYO15BQ96JP2 1530 aa21.3■■□□□ 1
ABR-235ENST00000576964 DCAF1Q9Y4B6 1507 aa21.26■□□□□ 0.99
ABR-235ENST00000576964 SCRIBQ14160 1630 aa20.82■□□□□ 0.92
ABR-235ENST00000576964 UNC13AQ9UPW8 1703 aa20.81■□□□□ 0.92
ABR-235ENST00000576964 PABPN1Q86U42 306 aaKnown RBP eCLIP20.77■□□□□ 0.92
ABR-235ENST00000576964 BICRAQ9NZM4 1560 aa20.66■□□□□ 0.9
ABR-235ENST00000576964 SHROOM4Q9ULL8 1493 aa20.56■□□□□ 0.88
ABR-235ENST00000576964 EIF4G1Q04637 1599 aaKnown RBP20.17■□□□□ 0.82
ABR-235ENST00000576964 DNAJC5BQ9UF47 199 aa20.16■□□□□ 0.82
ABR-235ENST00000576964 CC2D2AQ9P2K1 1620 aa20.05■□□□□ 0.8
ABR-235ENST00000576964 CECR2Q9BXF3 1484 aa19.96■□□□□ 0.79
ABR-235ENST00000576964 BAZ1AQ9NRL2 1556 aaPredicted RBP19.94■□□□□ 0.78
ABR-235ENST00000576964 SMARCA4P51532 1647 aa19.9■□□□□ 0.78
ABR-235ENST00000576964 SMARCA2P51531 1590 aa19.79■□□□□ 0.76
ABR-235ENST00000576964 MROH2BQ7Z745 1585 aa19.78■□□□□ 0.76
ABR-235ENST00000576964 ATAD2BQ9ULI0 1458 aa19.77■□□□□ 0.76
ABR-235ENST00000576964 NCAPD3P42695 1498 aa19.73■□□□□ 0.75
ABR-235ENST00000576964 PEG3Q9GZU2 1588 aa19.68■□□□□ 0.74
ABR-235ENST00000576964 BAZ1BQ9UIG0 1483 aaKnown RBP19.67■□□□□ 0.74
ABR-235ENST00000576964 HMGXB3Q12766 1538 aa19.66■□□□□ 0.74
ABR-235ENST00000576964 RSF1Q96T23 1441 aaPredicted RBP19.62■□□□□ 0.73
ABR-235ENST00000576964 WIZO95785 1651 aa19.56■□□□□ 0.72
ABR-235ENST00000576964 TOP2AP11388 1531 aaKnown RBP19.41■□□□□ 0.7
ABR-235ENST00000576964 SUPT5HO00267 1087 aaKnown RBP19.31■□□□□ 0.68
ABR-235ENST00000576964 LAMC3Q9Y6N6 1575 aa19.23■□□□□ 0.67
ABR-235ENST00000576964 CADPSQ9ULU8 1353 aa19.2■□□□□ 0.66
ABR-235ENST00000576964 NESP48681 1621 aa19.2■□□□□ 0.66
ABR-235ENST00000576964 ERCC6Q03468 1493 aa19.2■□□□□ 0.66
ABR-235ENST00000576964 CCDC88BA6NC98 1476 aa19.16■□□□□ 0.66
ABR-235ENST00000576964 PDS5BQ9NTI5 1447 aa19.14■□□□□ 0.65
ABR-235ENST00000576964 CFTRP13569 1480 aa19.09■□□□□ 0.65
ABR-235ENST00000576964 FANCD2Q9BXW9 1451 aa18.98■□□□□ 0.63
ABR-235ENST00000576964 KIF21AQ7Z4S6 1674 aa18.97■□□□□ 0.63
ABR-235ENST00000576964 CEP164Q9UPV0 1460 aa18.97■□□□□ 0.63
ABR-235ENST00000576964 PRDM2Q13029 1718 aa18.91■□□□□ 0.62
ABR-235ENST00000576964 CUX2O14529 1486 aa18.9■□□□□ 0.62
ABR-235ENST00000576964 MRC2Q9UBG0 1479 aa18.9■□□□□ 0.62
ABR-235ENST00000576964 THOC2Q8NI27 1593 aaKnown RBP18.87■□□□□ 0.61
ABR-235ENST00000576964 WDR62O43379 1518 aa18.79■□□□□ 0.6
ABR-235ENST00000576964 ABCC8Q09428 1581 aa18.74■□□□□ 0.59
ABR-235ENST00000576964 URB2Q14146 1524 aaKnown RBP18.74■□□□□ 0.59
ABR-235ENST00000576964 TOPBP1Q92547 1522 aa18.67■□□□□ 0.58
ABR-235ENST00000576964 DNMBPQ6XZF7 1577 aa18.67■□□□□ 0.58
ABR-235ENST00000576964 IFT140Q96RY7 1462 aa18.56■□□□□ 0.56
ABR-235ENST00000576964 CUX1P39880 1505 aa18.55■□□□□ 0.56
ABR-235ENST00000576964 WRNQ14191 1432 aaPredicted RBP eCLIP18.55■□□□□ 0.56
ABR-235ENST00000576964 POLA1P09884 1462 aaPredicted RBP18.52■□□□□ 0.55
ABR-235ENST00000576964 FGD5Q6ZNL6 1462 aa18.51■□□□□ 0.55
ABR-235ENST00000576964 SOGA1O94964 1423 aa18.49■□□□□ 0.55
ABR-235ENST00000576964 TOP2BQ02880 1626 aa18.45■□□□□ 0.54
ABR-235ENST00000576964 RAD54L2Q9Y4B4 1467 aa18.43■□□□□ 0.54
ABR-235ENST00000576964 SYNJ1O43426 1573 aa18.42■□□□□ 0.54
ABR-235ENST00000576964 BIVM-ERCC5R4GMW8 1640 aa18.42■□□□□ 0.54
ABR-235ENST00000576964 TARBP1Q13395 1621 aaKnown RBP18.41■□□□□ 0.54
ABR-235ENST00000576964 ZNF608Q9ULD9 1512 aaPredicted RBP18.4■□□□□ 0.54
ABR-235ENST00000576964 EIF4G3O43432 1585 aaKnown RBP18.35■□□□□ 0.53
ABR-235ENST00000576964 TDRD9Q8NDG6 1382 aaKnown RBP18.35■□□□□ 0.53
ABR-235ENST00000576964 WDR97A6NE52 1622 aa18.34■□□□□ 0.53
ABR-235ENST00000576964 AQRO60306 1485 aaKnown RBP eCLIP18.34■□□□□ 0.53
ABR-235ENST00000576964 ABCA10Q8WWZ4 1543 aa18.33■□□□□ 0.52
ABR-235ENST00000576964 GAPVD1Q14C86 1478 aa18.26■□□□□ 0.51
ABR-235ENST00000576964 TRIM41Q8WV44 630 aa18.26■□□□□ 0.51
ABR-235ENST00000576964 GRIN2BQ13224 1484 aa18.26■□□□□ 0.51
ABR-235ENST00000576964 ABCA5Q8WWZ7 1642 aa18.2■□□□□ 0.5
ABR-235ENST00000576964 FBLN2P98095 1184 aa18.2■□□□□ 0.5
ABR-235ENST00000576964 SNAPC4Q5SXM2 1469 aa18.2■□□□□ 0.5
ABR-235ENST00000576964 MAGI1Q96QZ7 1491 aaPredicted RBP18.19■□□□□ 0.5
ABR-235ENST00000576964 KIF27Q86VH2 1401 aa18.18■□□□□ 0.5
ABR-235ENST00000576964 PBRM1Q86U86 1689 aa18.18■□□□□ 0.5
ABR-235ENST00000576964 OSCARQ8IYS5 282 aa18.17■□□□□ 0.5
ABR-235ENST00000576964 CHMP7Q8WUX9 453 aaPredicted RBP18.16■□□□□ 0.5
ABR-235ENST00000576964 DNAJC5Q9H3Z4 198 aa18.13■□□□□ 0.49
ABR-235ENST00000576964 ERICH3Q5RHP9 1530 aa18.13■□□□□ 0.49
ABR-235ENST00000576964 SYNJ2O15056 1496 aa18.12■□□□□ 0.49
ABR-235ENST00000576964 CHD1O14646 1710 aa18.07■□□□□ 0.48
ABR-235ENST00000576964 FHAD1B1AJZ9 1412 aa18.06■□□□□ 0.48
ABR-235ENST00000576964 ADAMTS12P58397 1594 aa18.05■□□□□ 0.48
ABR-235ENST00000576964 CHIC1Q5VXU3 224 aa18.04■□□□□ 0.48
ABR-235ENST00000576964 IGF1RP08069 1367 aa18.02■□□□□ 0.47
ABR-235ENST00000576964 GRIN2AQ12879 1464 aa18.01■□□□□ 0.47
ABR-235ENST00000576964 CUL7Q14999 1698 aa17.99■□□□□ 0.47
ABR-235ENST00000576964 CARMIL1Q5VZK9 1371 aa17.95■□□□□ 0.46
ABR-235ENST00000576964 RUSC2Q8N2Y8 1516 aa17.94■□□□□ 0.46
ABR-235ENST00000576964 EEA1Q15075 1411 aa17.92■□□□□ 0.46
ABR-235ENST00000576964 NUP160Q12769 1436 aa17.89■□□□□ 0.45
ABR-235ENST00000576964 CLASP1Q7Z460 1538 aa17.88■□□□□ 0.45
ABR-235ENST00000576964 CSRNP3Q8WYN3 585 aa17.87■□□□□ 0.45
ABR-235ENST00000576964 RAPGEF2Q9Y4G8 1499 aa17.87■□□□□ 0.45
ABR-235ENST00000576964 CEP170Q5SW79 1584 aa17.87■□□□□ 0.45
ABR-235ENST00000576964 FAM9AQ8IZU1 332 aaPredicted RBP17.86■□□□□ 0.45
ABR-235ENST00000576964 ARHGEF11O15085 1522 aa17.82■□□□□ 0.44
ABR-235ENST00000576964 PRXQ9BXM0 1461 aa17.79■□□□□ 0.44
ABR-235ENST00000576964 KIAA0586Q9BVV6 1533 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms