RNA–Protein interactions for RNA: ENST00000576582.5

CALCOCO2-228, Transcript of calcium binding and coiled-coil domain 2, humanhuman

TSL 5

Gene CALCOCO2, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CALCOCO2-228ENST00000576582 NISCHQ9Y2I1 1504 aa27.04■■□□□ 1.92
CALCOCO2-228ENST00000576582 ABCC9O60706 1549 aa24.61■■□□□ 1.53
CALCOCO2-228ENST00000576582 CCDC180Q9P1Z9 1646 aa24.33■■□□□ 1.49
CALCOCO2-228ENST00000576582 DNAJC5BQ9UF47 199 aa23.37■■□□□ 1.33
CALCOCO2-228ENST00000576582 RB1CC1Q8TDY2 1594 aa23.33■■□□□ 1.33
CALCOCO2-228ENST00000576582 NACADO15069 1562 aa23.14■■□□□ 1.29
CALCOCO2-228ENST00000576582 DCAF8L2P0C7V8 631 aa23■■□□□ 1.27
CALCOCO2-228ENST00000576582 PABPN1Q86U42 306 aaKnown RBP eCLIP22.91■■□□□ 1.26
CALCOCO2-228ENST00000576582 MYO15BQ96JP2 1530 aa22.77■■□□□ 1.24
CALCOCO2-228ENST00000576582 UNC13AQ9UPW8 1703 aa22.68■■□□□ 1.22
CALCOCO2-228ENST00000576582 BICRAQ9NZM4 1560 aa22.61■■□□□ 1.21
CALCOCO2-228ENST00000576582 SHROOM4Q9ULL8 1493 aa22.38■■□□□ 1.17
CALCOCO2-228ENST00000576582 DCAF1Q9Y4B6 1507 aa22.36■■□□□ 1.17
CALCOCO2-228ENST00000576582 ZCCHC6Q5VYS8 1495 aaKnown RBP22.34■■□□□ 1.17
CALCOCO2-228ENST00000576582 CECR2Q9BXF3 1484 aa22.22■■□□□ 1.15
CALCOCO2-228ENST00000576582 CC2D2AQ9P2K1 1620 aa22.2■■□□□ 1.14
CALCOCO2-228ENST00000576582 SCRIBQ14160 1630 aa22.12■■□□□ 1.13
CALCOCO2-228ENST00000576582 EIF4G1Q04637 1599 aaKnown RBP22.1■■□□□ 1.13
CALCOCO2-228ENST00000576582 DNAJC5Q9H3Z4 198 aa21.73■■□□□ 1.07
CALCOCO2-228ENST00000576582 NCAPD3P42695 1498 aa21.39■■□□□ 1.02
CALCOCO2-228ENST00000576582 CUX2O14529 1486 aa21.37■■□□□ 1.01
CALCOCO2-228ENST00000576582 ERCC6Q03468 1493 aa21.3■■□□□ 1
CALCOCO2-228ENST00000576582 ATAD2BQ9ULI0 1458 aa21.25■□□□□ 0.99
CALCOCO2-228ENST00000576582 SMARCA2P51531 1590 aa21.18■□□□□ 0.98
CALCOCO2-228ENST00000576582 HMGXB3Q12766 1538 aa21.14■□□□□ 0.98
CALCOCO2-228ENST00000576582 SMARCA4P51532 1647 aa21.1■□□□□ 0.97
CALCOCO2-228ENST00000576582 NESP48681 1621 aa21.04■□□□□ 0.96
CALCOCO2-228ENST00000576582 BAZ1BQ9UIG0 1483 aaKnown RBP21.02■□□□□ 0.96
CALCOCO2-228ENST00000576582 BAZ1AQ9NRL2 1556 aaPredicted RBP21.01■□□□□ 0.95
CALCOCO2-228ENST00000576582 PEG3Q9GZU2 1588 aa20.94■□□□□ 0.94
CALCOCO2-228ENST00000576582 LAMC3Q9Y6N6 1575 aa20.89■□□□□ 0.94
CALCOCO2-228ENST00000576582 THOC2Q8NI27 1593 aaKnown RBP20.85■□□□□ 0.93
CALCOCO2-228ENST00000576582 PDS5BQ9NTI5 1447 aa20.85■□□□□ 0.93
CALCOCO2-228ENST00000576582 MROH2BQ7Z745 1585 aa20.8■□□□□ 0.92
CALCOCO2-228ENST00000576582 CADPSQ9ULU8 1353 aa20.73■□□□□ 0.91
CALCOCO2-228ENST00000576582 KIF21AQ7Z4S6 1674 aa20.7■□□□□ 0.91
CALCOCO2-228ENST00000576582 MRC2Q9UBG0 1479 aa20.62■□□□□ 0.89
CALCOCO2-228ENST00000576582 TRIM41Q8WV44 630 aa20.59■□□□□ 0.89
CALCOCO2-228ENST00000576582 WDR62O43379 1518 aa20.56■□□□□ 0.88
CALCOCO2-228ENST00000576582 WIZO95785 1651 aa20.49■□□□□ 0.87
CALCOCO2-228ENST00000576582 CEP164Q9UPV0 1460 aa20.49■□□□□ 0.87
CALCOCO2-228ENST00000576582 FANCD2Q9BXW9 1451 aa20.45■□□□□ 0.86
CALCOCO2-228ENST00000576582 OSCARQ8IYS5 282 aa20.43■□□□□ 0.86
CALCOCO2-228ENST00000576582 CFTRP13569 1480 aa20.41■□□□□ 0.86
CALCOCO2-228ENST00000576582 RSF1Q96T23 1441 aaPredicted RBP20.32■□□□□ 0.84
CALCOCO2-228ENST00000576582 TOP2AP11388 1531 aaKnown RBP20.27■□□□□ 0.83
CALCOCO2-228ENST00000576582 URB2Q14146 1524 aaKnown RBP20.27■□□□□ 0.83
CALCOCO2-228ENST00000576582 IFT140Q96RY7 1462 aa20.12■□□□□ 0.81
CALCOCO2-228ENST00000576582 CCDC88BA6NC98 1476 aa20.07■□□□□ 0.8
CALCOCO2-228ENST00000576582 PRDM2Q13029 1718 aa20.07■□□□□ 0.8
CALCOCO2-228ENST00000576582 ZNF608Q9ULD9 1512 aaPredicted RBP20.06■□□□□ 0.8
CALCOCO2-228ENST00000576582 ABCC8Q09428 1581 aa20.04■□□□□ 0.8
CALCOCO2-228ENST00000576582 RIMBP3CA6NJZ7 1639 aa20.03■□□□□ 0.8
CALCOCO2-228ENST00000576582 RIMBP3BA6NNM3 1639 aa20.03■□□□□ 0.8
CALCOCO2-228ENST00000576582 RIMBP3Q9UFD9 1639 aa20.03■□□□□ 0.8
CALCOCO2-228ENST00000576582 TOPBP1Q92547 1522 aa20.02■□□□□ 0.79
CALCOCO2-228ENST00000576582 ARHGEF11O15085 1522 aa19.98■□□□□ 0.79
CALCOCO2-228ENST00000576582 CYB5RLQ6IPT4 315 aa19.93■□□□□ 0.78
CALCOCO2-228ENST00000576582 DNMBPQ6XZF7 1577 aa19.91■□□□□ 0.78
CALCOCO2-228ENST00000576582 EIF4G3O43432 1585 aaKnown RBP19.89■□□□□ 0.77
CALCOCO2-228ENST00000576582 AQRO60306 1485 aaKnown RBP eCLIP19.87■□□□□ 0.776e-13■■■■□ 26.1
CALCOCO2-228ENST00000576582 FBLN2P98095 1184 aa19.84■□□□□ 0.77
CALCOCO2-228ENST00000576582 TARBP1Q13395 1621 aaKnown RBP19.83■□□□□ 0.76
CALCOCO2-228ENST00000576582 POLA1P09884 1462 aaPredicted RBP19.79■□□□□ 0.76
CALCOCO2-228ENST00000576582 TRHP20396 242 aaPredicted RBP19.79■□□□□ 0.76
CALCOCO2-228ENST00000576582 CHD1O14646 1710 aa19.77■□□□□ 0.76
CALCOCO2-228ENST00000576582 SOGA1O94964 1423 aa19.76■□□□□ 0.75
CALCOCO2-228ENST00000576582 ARAP1Q96P48 1450 aa19.75■□□□□ 0.75
CALCOCO2-228ENST00000576582 TDRD9Q8NDG6 1382 aaKnown RBP19.73■□□□□ 0.75
CALCOCO2-228ENST00000576582 RAD54L2Q9Y4B4 1467 aa19.72■□□□□ 0.75
CALCOCO2-228ENST00000576582 CHMP7Q8WUX9 453 aaPredicted RBP19.68■□□□□ 0.74
CALCOCO2-228ENST00000576582 WDR97A6NE52 1622 aa19.66■□□□□ 0.74
CALCOCO2-228ENST00000576582 SNAPC4Q5SXM2 1469 aa19.63■□□□□ 0.73
CALCOCO2-228ENST00000576582 FGD5Q6ZNL6 1462 aa19.62■□□□□ 0.73
CALCOCO2-228ENST00000576582 MAGI1Q96QZ7 1491 aaPredicted RBP19.62■□□□□ 0.73
CALCOCO2-228ENST00000576582 CLASP1Q7Z460 1538 aa19.6■□□□□ 0.73
CALCOCO2-228ENST00000576582 GRIN2BQ13224 1484 aa19.6■□□□□ 0.73
CALCOCO2-228ENST00000576582 SYNJ1O43426 1573 aa19.58■□□□□ 0.73
CALCOCO2-228ENST00000576582 SYNJ2O15056 1496 aa19.55■□□□□ 0.72
CALCOCO2-228ENST00000576582 CUX1P39880 1505 aa19.55■□□□□ 0.72
CALCOCO2-228ENST00000576582 GAPVD1Q14C86 1478 aa19.48■□□□□ 0.71
CALCOCO2-228ENST00000576582 AEBP2Q6ZN18 517 aaPredicted RBP19.43■□□□□ 0.7
CALCOCO2-228ENST00000576582 ABCA10Q8WWZ4 1543 aa19.42■□□□□ 0.7
CALCOCO2-228ENST00000576582 PBRM1Q86U86 1689 aa19.38■□□□□ 0.69
CALCOCO2-228ENST00000576582 ABCA5Q8WWZ7 1642 aa19.35■□□□□ 0.69
CALCOCO2-228ENST00000576582 WRNQ14191 1432 aaPredicted RBP eCLIP19.33■□□□□ 0.68
CALCOCO2-228ENST00000576582 GRIN2AQ12879 1464 aa19.32■□□□□ 0.68
CALCOCO2-228ENST00000576582 NUP160Q12769 1436 aa19.28■□□□□ 0.68
CALCOCO2-228ENST00000576582 FHAD1B1AJZ9 1412 aa19.25■□□□□ 0.67
CALCOCO2-228ENST00000576582 SUPT5HO00267 1087 aaKnown RBP19.24■□□□□ 0.67
CALCOCO2-228ENST00000576582 ERCC6L2Q5T890 1561 aa19.23■□□□□ 0.67
CALCOCO2-228ENST00000576582 CEP170Q5SW79 1584 aa19.23■□□□□ 0.67
CALCOCO2-228ENST00000576582 ADAMTS12P58397 1594 aa19.22■□□□□ 0.67
CALCOCO2-228ENST00000576582 TOP2BQ02880 1626 aa19.18■□□□□ 0.66
CALCOCO2-228ENST00000576582 BIVM-ERCC5R4GMW8 1640 aa19.18■□□□□ 0.66
CALCOCO2-228ENST00000576582 ERICH3Q5RHP9 1530 aa19.17■□□□□ 0.66
CALCOCO2-228ENST00000576582 SHROOM2Q13796 1616 aa19.17■□□□□ 0.66
CALCOCO2-228ENST00000576582 JPH4Q96JJ6 628 aa19.15■□□□□ 0.66
CALCOCO2-228ENST00000576582 PRG4Q92954 1404 aaPredicted RBP19.13■□□□□ 0.65
CALCOCO2-228ENST00000576582 NPM1P06748 294 aaKnown RBP eCLIP19.08■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms