RNA–Protein interactions for RNA: ENST00000575560.5

CALCOCO2-227, Transcript of calcium binding and coiled-coil domain 2, humanhuman

TSL 5

Gene CALCOCO2, Length 540 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CALCOCO2-227ENST00000575560 NISCHQ9Y2I1 1504 aa25.41■■□□□ 1.66
CALCOCO2-227ENST00000575560 ABCC9O60706 1549 aa23.13■■□□□ 1.29
CALCOCO2-227ENST00000575560 CCDC180Q9P1Z9 1646 aa22.84■■□□□ 1.25
CALCOCO2-227ENST00000575560 DNAJC5BQ9UF47 199 aa22.04■■□□□ 1.12
CALCOCO2-227ENST00000575560 RB1CC1Q8TDY2 1594 aa21.89■■□□□ 1.09
CALCOCO2-227ENST00000575560 NACADO15069 1562 aa21.7■■□□□ 1.06
CALCOCO2-227ENST00000575560 DCAF8L2P0C7V8 631 aa21.57■■□□□ 1.04
CALCOCO2-227ENST00000575560 PABPN1Q86U42 306 aaKnown RBP eCLIP21.55■■□□□ 1.04
CALCOCO2-227ENST00000575560 MYO15BQ96JP2 1530 aa21.36■■□□□ 1.01
CALCOCO2-227ENST00000575560 UNC13AQ9UPW8 1703 aa21.35■■□□□ 1.01
CALCOCO2-227ENST00000575560 BICRAQ9NZM4 1560 aa21.3■■□□□ 1
CALCOCO2-227ENST00000575560 ZCCHC6Q5VYS8 1495 aaKnown RBP20.98■□□□□ 0.95
CALCOCO2-227ENST00000575560 SHROOM4Q9ULL8 1493 aa20.98■□□□□ 0.95
CALCOCO2-227ENST00000575560 DCAF1Q9Y4B6 1507 aa20.98■□□□□ 0.95
CALCOCO2-227ENST00000575560 CECR2Q9BXF3 1484 aa20.88■□□□□ 0.93
CALCOCO2-227ENST00000575560 CC2D2AQ9P2K1 1620 aa20.87■□□□□ 0.93
CALCOCO2-227ENST00000575560 SCRIBQ14160 1630 aa20.79■□□□□ 0.92
CALCOCO2-227ENST00000575560 EIF4G1Q04637 1599 aaKnown RBP20.77■□□□□ 0.92
CALCOCO2-227ENST00000575560 DNAJC5Q9H3Z4 198 aa20.41■□□□□ 0.86
CALCOCO2-227ENST00000575560 NCAPD3P42695 1498 aa20.09■□□□□ 0.81
CALCOCO2-227ENST00000575560 CUX2O14529 1486 aa20.05■□□□□ 0.8
CALCOCO2-227ENST00000575560 AEBP2Q6ZN18 517 aaPredicted RBP19.99■□□□□ 0.79
CALCOCO2-227ENST00000575560 ERCC6Q03468 1493 aa19.97■□□□□ 0.79
CALCOCO2-227ENST00000575560 ATAD2BQ9ULI0 1458 aa19.97■□□□□ 0.79
CALCOCO2-227ENST00000575560 SMARCA2P51531 1590 aa19.86■□□□□ 0.77
CALCOCO2-227ENST00000575560 HMGXB3Q12766 1538 aa19.86■□□□□ 0.77
CALCOCO2-227ENST00000575560 SMARCA4P51532 1647 aa19.84■□□□□ 0.77
CALCOCO2-227ENST00000575560 NESP48681 1621 aa19.81■□□□□ 0.76
CALCOCO2-227ENST00000575560 BAZ1BQ9UIG0 1483 aaKnown RBP19.73■□□□□ 0.75
CALCOCO2-227ENST00000575560 BAZ1AQ9NRL2 1556 aaPredicted RBP19.71■□□□□ 0.75
CALCOCO2-227ENST00000575560 PEG3Q9GZU2 1588 aa19.68■□□□□ 0.74
CALCOCO2-227ENST00000575560 THOC2Q8NI27 1593 aaKnown RBP19.62■□□□□ 0.73
CALCOCO2-227ENST00000575560 LAMC3Q9Y6N6 1575 aa19.61■□□□□ 0.73
CALCOCO2-227ENST00000575560 MROH2BQ7Z745 1585 aa19.57■□□□□ 0.72
CALCOCO2-227ENST00000575560 PDS5BQ9NTI5 1447 aa19.55■□□□□ 0.72
CALCOCO2-227ENST00000575560 KIF21AQ7Z4S6 1674 aa19.48■□□□□ 0.71
CALCOCO2-227ENST00000575560 CADPSQ9ULU8 1353 aa19.46■□□□□ 0.71
CALCOCO2-227ENST00000575560 MRC2Q9UBG0 1479 aa19.36■□□□□ 0.69
CALCOCO2-227ENST00000575560 CHIC1Q5VXU3 224 aa19.34■□□□□ 0.69
CALCOCO2-227ENST00000575560 TRIM41Q8WV44 630 aa19.34■□□□□ 0.69
CALCOCO2-227ENST00000575560 WDR62O43379 1518 aa19.32■□□□□ 0.68
CALCOCO2-227ENST00000575560 WIZO95785 1651 aa19.28■□□□□ 0.68
CALCOCO2-227ENST00000575560 CEP164Q9UPV0 1460 aa19.22■□□□□ 0.67
CALCOCO2-227ENST00000575560 FANCD2Q9BXW9 1451 aa19.2■□□□□ 0.66
CALCOCO2-227ENST00000575560 CFTRP13569 1480 aa19.18■□□□□ 0.66
CALCOCO2-227ENST00000575560 OSCARQ8IYS5 282 aa19.15■□□□□ 0.66
CALCOCO2-227ENST00000575560 RSF1Q96T23 1441 aaPredicted RBP19.1■□□□□ 0.65
CALCOCO2-227ENST00000575560 URB2Q14146 1524 aaKnown RBP19.06■□□□□ 0.64
CALCOCO2-227ENST00000575560 TOP2AP11388 1531 aaKnown RBP19.03■□□□□ 0.64
CALCOCO2-227ENST00000575560 ZNF608Q9ULD9 1512 aaPredicted RBP18.88■□□□□ 0.61
CALCOCO2-227ENST00000575560 CCDC88BA6NC98 1476 aa18.87■□□□□ 0.61
CALCOCO2-227ENST00000575560 IFT140Q96RY7 1462 aa18.87■□□□□ 0.61
CALCOCO2-227ENST00000575560 RIMBP3CA6NJZ7 1639 aa18.85■□□□□ 0.61
CALCOCO2-227ENST00000575560 RIMBP3BA6NNM3 1639 aa18.85■□□□□ 0.61
CALCOCO2-227ENST00000575560 RIMBP3Q9UFD9 1639 aa18.85■□□□□ 0.61
CALCOCO2-227ENST00000575560 PRDM2Q13029 1718 aa18.83■□□□□ 0.61
CALCOCO2-227ENST00000575560 TOPBP1Q92547 1522 aa18.8■□□□□ 0.6
CALCOCO2-227ENST00000575560 ARHGEF11O15085 1522 aa18.78■□□□□ 0.6
CALCOCO2-227ENST00000575560 ABCC8Q09428 1581 aa18.76■□□□□ 0.59
CALCOCO2-227ENST00000575560 CYB5RLQ6IPT4 315 aa18.71■□□□□ 0.59
CALCOCO2-227ENST00000575560 EIF4G3O43432 1585 aaKnown RBP18.7■□□□□ 0.58
CALCOCO2-227ENST00000575560 DNMBPQ6XZF7 1577 aa18.69■□□□□ 0.58
CALCOCO2-227ENST00000575560 AQRO60306 1485 aaKnown RBP eCLIP18.69■□□□□ 0.586e-13■■■■□ 26.1
CALCOCO2-227ENST00000575560 TARBP1Q13395 1621 aaKnown RBP18.66■□□□□ 0.58
CALCOCO2-227ENST00000575560 FBLN2P98095 1184 aa18.61■□□□□ 0.57
CALCOCO2-227ENST00000575560 POLA1P09884 1462 aaPredicted RBP18.6■□□□□ 0.57
CALCOCO2-227ENST00000575560 ARAP1Q96P48 1450 aa18.58■□□□□ 0.57
CALCOCO2-227ENST00000575560 CHD1O14646 1710 aa18.58■□□□□ 0.57
CALCOCO2-227ENST00000575560 RAD54L2Q9Y4B4 1467 aa18.55■□□□□ 0.56
CALCOCO2-227ENST00000575560 TRHP20396 242 aaPredicted RBP18.55■□□□□ 0.56
CALCOCO2-227ENST00000575560 SOGA1O94964 1423 aa18.54■□□□□ 0.56
CALCOCO2-227ENST00000575560 TDRD9Q8NDG6 1382 aaKnown RBP18.54■□□□□ 0.56
CALCOCO2-227ENST00000575560 SNAPC4Q5SXM2 1469 aa18.46■□□□□ 0.54
CALCOCO2-227ENST00000575560 CHMP7Q8WUX9 453 aaPredicted RBP18.44■□□□□ 0.54
CALCOCO2-227ENST00000575560 FGD5Q6ZNL6 1462 aa18.44■□□□□ 0.54
CALCOCO2-227ENST00000575560 WDR97A6NE52 1622 aa18.43■□□□□ 0.54
CALCOCO2-227ENST00000575560 CLASP1Q7Z460 1538 aa18.43■□□□□ 0.54
CALCOCO2-227ENST00000575560 MAGI1Q96QZ7 1491 aaPredicted RBP18.4■□□□□ 0.54
CALCOCO2-227ENST00000575560 CUX1P39880 1505 aa18.39■□□□□ 0.54
CALCOCO2-227ENST00000575560 GRIN2BQ13224 1484 aa18.39■□□□□ 0.53
CALCOCO2-227ENST00000575560 SYNJ1O43426 1573 aa18.37■□□□□ 0.53
CALCOCO2-227ENST00000575560 SYNJ2O15056 1496 aa18.35■□□□□ 0.53
CALCOCO2-227ENST00000575560 GAPVD1Q14C86 1478 aa18.29■□□□□ 0.52
CALCOCO2-227ENST00000575560 ABCA10Q8WWZ4 1543 aa18.23■□□□□ 0.51
CALCOCO2-227ENST00000575560 PBRM1Q86U86 1689 aa18.21■□□□□ 0.51
CALCOCO2-227ENST00000575560 ABCA5Q8WWZ7 1642 aa18.19■□□□□ 0.5
CALCOCO2-227ENST00000575560 GRIN2AQ12879 1464 aa18.14■□□□□ 0.5
CALCOCO2-227ENST00000575560 ERCC6L2Q5T890 1561 aa18.13■□□□□ 0.49
CALCOCO2-227ENST00000575560 NUP160Q12769 1436 aa18.12■□□□□ 0.49
CALCOCO2-227ENST00000575560 WRNQ14191 1432 aaPredicted RBP eCLIP18.12■□□□□ 0.49
CALCOCO2-227ENST00000575560 CEP170Q5SW79 1584 aa18.08■□□□□ 0.48
CALCOCO2-227ENST00000575560 ADAMTS12P58397 1594 aa18.06■□□□□ 0.48
CALCOCO2-227ENST00000575560 FHAD1B1AJZ9 1412 aa18.06■□□□□ 0.48
CALCOCO2-227ENST00000575560 SUPT5HO00267 1087 aaKnown RBP18.04■□□□□ 0.48
CALCOCO2-227ENST00000575560 SHROOM2Q13796 1616 aa18.03■□□□□ 0.48
CALCOCO2-227ENST00000575560 TOP2BQ02880 1626 aa18.01■□□□□ 0.47
CALCOCO2-227ENST00000575560 BIVM-ERCC5R4GMW8 1640 aa17.99■□□□□ 0.47
CALCOCO2-227ENST00000575560 ERICH3Q5RHP9 1530 aa17.98■□□□□ 0.47
CALCOCO2-227ENST00000575560 JPH4Q96JJ6 628 aa17.97■□□□□ 0.47
CALCOCO2-227ENST00000575560 PRG4Q92954 1404 aaPredicted RBP17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms