RNA–Protein interactions for RNA: ENST00000575547.1

POLR2A-204, Transcript of RNA polymerase II subunit A, humanhuman

TSL 3

Gene POLR2A, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2A-204ENST00000575547 NISCHQ9Y2I1 1504 aa16.16■□□□□ 0.18
POLR2A-204ENST00000575547 ABCC9O60706 1549 aa14.54□□□□□ -0.08
POLR2A-204ENST00000575547 CCDC180Q9P1Z9 1646 aa14.42□□□□□ -0.1
POLR2A-204ENST00000575547 DCAF8L2P0C7V8 631 aa13.88□□□□□ -0.19
POLR2A-204ENST00000575547 RB1CC1Q8TDY2 1594 aa13.79□□□□□ -0.2
POLR2A-204ENST00000575547 NACADO15069 1562 aa13.7□□□□□ -0.22
POLR2A-204ENST00000575547 DNAJC5BQ9UF47 199 aa13.67□□□□□ -0.22
POLR2A-204ENST00000575547 PABPN1Q86U42 306 aaKnown RBP eCLIP13.62□□□□□ -0.23
POLR2A-204ENST00000575547 MYO15BQ96JP2 1530 aa13.47□□□□□ -0.25
POLR2A-204ENST00000575547 UNC13AQ9UPW8 1703 aa13.4□□□□□ -0.26
POLR2A-204ENST00000575547 ZCCHC6Q5VYS8 1495 aaKnown RBP13.35□□□□□ -0.27
POLR2A-204ENST00000575547 BICRAQ9NZM4 1560 aa13.34□□□□□ -0.27
POLR2A-204ENST00000575547 DCAF1Q9Y4B6 1507 aa13.3□□□□□ -0.28
POLR2A-204ENST00000575547 SCRIBQ14160 1630 aa13.21□□□□□ -0.29
POLR2A-204ENST00000575547 SHROOM4Q9ULL8 1493 aa13.15□□□□□ -0.3
POLR2A-204ENST00000575547 CECR2Q9BXF3 1484 aa13.09□□□□□ -0.31
POLR2A-204ENST00000575547 CC2D2AQ9P2K1 1620 aa13.08□□□□□ -0.32
POLR2A-204ENST00000575547 EIF4G1Q04637 1599 aaKnown RBP13.04□□□□□ -0.32
POLR2A-204ENST00000575547 NCAPD3P42695 1498 aa12.66□□□□□ -0.38
POLR2A-204ENST00000575547 ATAD2BQ9ULI0 1458 aa12.63□□□□□ -0.39
POLR2A-204ENST00000575547 SMARCA2P51531 1590 aa12.58□□□□□ -0.4
POLR2A-204ENST00000575547 ERCC6Q03468 1493 aa12.58□□□□□ -0.4
POLR2A-204ENST00000575547 DNAJC5Q9H3Z4 198 aa12.57□□□□□ -0.4
POLR2A-204ENST00000575547 SMARCA4P51532 1647 aa12.57□□□□□ -0.4
POLR2A-204ENST00000575547 BAZ1AQ9NRL2 1556 aaPredicted RBP12.54□□□□□ -0.4
POLR2A-204ENST00000575547 BAZ1BQ9UIG0 1483 aaKnown RBP12.52□□□□□ -0.41
POLR2A-204ENST00000575547 HMGXB3Q12766 1538 aa12.51□□□□□ -0.41
POLR2A-204ENST00000575547 CUX2O14529 1486 aa12.48□□□□□ -0.41
POLR2A-204ENST00000575547 NESP48681 1621 aa12.47□□□□□ -0.41
POLR2A-204ENST00000575547 MROH2BQ7Z745 1585 aa12.45□□□□□ -0.42
POLR2A-204ENST00000575547 PEG3Q9GZU2 1588 aa12.42□□□□□ -0.42
POLR2A-204ENST00000575547 PDS5BQ9NTI5 1447 aa12.36□□□□□ -0.43
POLR2A-204ENST00000575547 LAMC3Q9Y6N6 1575 aa12.35□□□□□ -0.43
POLR2A-204ENST00000575547 CADPSQ9ULU8 1353 aa12.32□□□□□ -0.44
POLR2A-204ENST00000575547 WIZO95785 1651 aa12.3□□□□□ -0.44
POLR2A-204ENST00000575547 THOC2Q8NI27 1593 aaKnown RBP12.26□□□□□ -0.45
POLR2A-204ENST00000575547 KIF21AQ7Z4S6 1674 aa12.25□□□□□ -0.45
POLR2A-204ENST00000575547 RSF1Q96T23 1441 aaPredicted RBP12.22□□□□□ -0.45
POLR2A-204ENST00000575547 MRC2Q9UBG0 1479 aa12.2□□□□□ -0.46
POLR2A-204ENST00000575547 CEP164Q9UPV0 1460 aa12.16□□□□□ -0.46
POLR2A-204ENST00000575547 FANCD2Q9BXW9 1451 aa12.15□□□□□ -0.46
POLR2A-204ENST00000575547 CFTRP13569 1480 aa12.14□□□□□ -0.47
POLR2A-204ENST00000575547 TOP2AP11388 1531 aaKnown RBP12.12□□□□□ -0.47
POLR2A-204ENST00000575547 WDR62O43379 1518 aa12.11□□□□□ -0.47
POLR2A-204ENST00000575547 TRIM41Q8WV44 630 aa12.09□□□□□ -0.47
POLR2A-204ENST00000575547 OSCARQ8IYS5 282 aa12.05□□□□□ -0.48
POLR2A-204ENST00000575547 CCDC88BA6NC98 1476 aa12.05□□□□□ -0.48
POLR2A-204ENST00000575547 URB2Q14146 1524 aaKnown RBP12.02□□□□□ -0.48
POLR2A-204ENST00000575547 PRDM2Q13029 1718 aa11.92□□□□□ -0.5
POLR2A-204ENST00000575547 IFT140Q96RY7 1462 aa11.92□□□□□ -0.5
POLR2A-204ENST00000575547 ABCC8Q09428 1581 aa11.92□□□□□ -0.5
POLR2A-204ENST00000575547 TOPBP1Q92547 1522 aa11.91□□□□□ -0.5
POLR2A-204ENST00000575547 ZNF608Q9ULD9 1512 aaPredicted RBP11.9□□□□□ -0.5
POLR2A-204ENST00000575547 FBLN2P98095 1184 aa11.86□□□□□ -0.51
POLR2A-204ENST00000575547 SUPT5HO00267 1087 aaKnown RBP11.85□□□□□ -0.51
POLR2A-204ENST00000575547 DNMBPQ6XZF7 1577 aa11.84□□□□□ -0.51
POLR2A-204ENST00000575547 AQRO60306 1485 aaKnown RBP eCLIP11.83□□□□□ -0.521e-7■■■■■ 33
POLR2A-204ENST00000575547 SOGA1O94964 1423 aa11.8□□□□□ -0.52
POLR2A-204ENST00000575547 CYB5RLQ6IPT4 315 aa11.79□□□□□ -0.52
POLR2A-204ENST00000575547 TDRD9Q8NDG6 1382 aaKnown RBP11.79□□□□□ -0.52
POLR2A-204ENST00000575547 POLA1P09884 1462 aaPredicted RBP11.78□□□□□ -0.52
POLR2A-204ENST00000575547 RAD54L2Q9Y4B4 1467 aa11.78□□□□□ -0.52
POLR2A-204ENST00000575547 EIF4G3O43432 1585 aaKnown RBP11.77□□□□□ -0.53
POLR2A-204ENST00000575547 TARBP1Q13395 1621 aaKnown RBP11.75□□□□□ -0.53
POLR2A-204ENST00000575547 CHMP7Q8WUX9 453 aaPredicted RBP11.75□□□□□ -0.53
POLR2A-204ENST00000575547 RIMBP3CA6NJZ7 1639 aa11.75□□□□□ -0.53
POLR2A-204ENST00000575547 RIMBP3BA6NNM3 1639 aa11.75□□□□□ -0.53
POLR2A-204ENST00000575547 RIMBP3Q9UFD9 1639 aa11.75□□□□□ -0.53
POLR2A-204ENST00000575547 ARHGEF11O15085 1522 aa11.72□□□□□ -0.53
POLR2A-204ENST00000575547 FGD5Q6ZNL6 1462 aa11.72□□□□□ -0.53
POLR2A-204ENST00000575547 CUX1P39880 1505 aa11.7□□□□□ -0.54
POLR2A-204ENST00000575547 TRHP20396 242 aaPredicted RBP11.69□□□□□ -0.54
POLR2A-204ENST00000575547 CHD1O14646 1710 aa11.69□□□□□ -0.54
POLR2A-204ENST00000575547 SNAPC4Q5SXM2 1469 aa11.67□□□□□ -0.54
POLR2A-204ENST00000575547 GRIN2BQ13224 1484 aa11.65□□□□□ -0.54
POLR2A-204ENST00000575547 WDR97A6NE52 1622 aa11.63□□□□□ -0.55
POLR2A-204ENST00000575547 GAPVD1Q14C86 1478 aa11.63□□□□□ -0.55
POLR2A-204ENST00000575547 MAGI1Q96QZ7 1491 aaPredicted RBP11.63□□□□□ -0.55
POLR2A-204ENST00000575547 ARAP1Q96P48 1450 aa11.61□□□□□ -0.55
POLR2A-204ENST00000575547 SYNJ2O15056 1496 aa11.6□□□□□ -0.55
POLR2A-204ENST00000575547 SYNJ1O43426 1573 aa11.59□□□□□ -0.55
POLR2A-204ENST00000575547 WRNQ14191 1432 aaPredicted RBP eCLIP11.59□□□□□ -0.55
POLR2A-204ENST00000575547 ABCA10Q8WWZ4 1543 aa11.58□□□□□ -0.56
POLR2A-204ENST00000575547 CLASP1Q7Z460 1538 aa11.55□□□□□ -0.56
POLR2A-204ENST00000575547 PBRM1Q86U86 1689 aa11.53□□□□□ -0.56
POLR2A-204ENST00000575547 ABCA5Q8WWZ7 1642 aa11.5□□□□□ -0.57
POLR2A-204ENST00000575547 TOP2BQ02880 1626 aa11.49□□□□□ -0.57
POLR2A-204ENST00000575547 FHAD1B1AJZ9 1412 aa11.48□□□□□ -0.57
POLR2A-204ENST00000575547 GRIN2AQ12879 1464 aa11.48□□□□□ -0.57
POLR2A-204ENST00000575547 BIVM-ERCC5R4GMW8 1640 aa11.46□□□□□ -0.57
POLR2A-204ENST00000575547 JPH4Q96JJ6 628 aa11.45□□□□□ -0.58
POLR2A-204ENST00000575547 NUP160Q12769 1436 aa11.43□□□□□ -0.58
POLR2A-204ENST00000575547 ADAMTS12P58397 1594 aa11.43□□□□□ -0.58
POLR2A-204ENST00000575547 ERICH3Q5RHP9 1530 aa11.43□□□□□ -0.58
POLR2A-204ENST00000575547 CEP170Q5SW79 1584 aa11.41□□□□□ -0.58
POLR2A-204ENST00000575547 ERCC6L2Q5T890 1561 aa11.4□□□□□ -0.58
POLR2A-204ENST00000575547 NPM1P06748 294 aaKnown RBP eCLIP11.39□□□□□ -0.59
POLR2A-204ENST00000575547 AEBP2Q6ZN18 517 aaPredicted RBP11.39□□□□□ -0.59
POLR2A-204ENST00000575547 PRG4Q92954 1404 aaPredicted RBP11.39□□□□□ -0.59
POLR2A-204ENST00000575547 IGF1RP08069 1367 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms