RNA–Protein interactions for RNA: ENST00000574999.1

ATP2A3-214, Transcript of ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3, humanhuman

TSL 3

Gene ATP2A3, Length 776 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATP2A3-214ENST00000574999 NISCHQ9Y2I1 1504 aa32.71■■■□□ 2.83
ATP2A3-214ENST00000574999 CCDC180Q9P1Z9 1646 aa29.16■■■□□ 2.26
ATP2A3-214ENST00000574999 ABCC9O60706 1549 aa29.05■■■□□ 2.24
ATP2A3-214ENST00000574999 RB1CC1Q8TDY2 1594 aa27.7■■■□□ 2.03
ATP2A3-214ENST00000574999 NACADO15069 1562 aa27.58■■■□□ 2.01
ATP2A3-214ENST00000574999 DCAF8L2P0C7V8 631 aa27.55■■■□□ 2
ATP2A3-214ENST00000574999 MYO15BQ96JP2 1530 aa27.3■■□□□ 1.96
ATP2A3-214ENST00000574999 DNAJC5BQ9UF47 199 aa27.18■■□□□ 1.94
ATP2A3-214ENST00000574999 PABPN1Q86U42 306 aaKnown RBP eCLIP27.14■■□□□ 1.94
ATP2A3-214ENST00000574999 ZCCHC6Q5VYS8 1495 aaKnown RBP27.13■■□□□ 1.93
ATP2A3-214ENST00000574999 UNC13AQ9UPW8 1703 aa27.04■■□□□ 1.92
ATP2A3-214ENST00000574999 DCAF1Q9Y4B6 1507 aa27.02■■□□□ 1.92
ATP2A3-214ENST00000574999 BICRAQ9NZM4 1560 aa26.93■■□□□ 1.9
ATP2A3-214ENST00000574999 SCRIBQ14160 1630 aa26.62■■□□□ 1.85
ATP2A3-214ENST00000574999 SHROOM4Q9ULL8 1493 aa26.55■■□□□ 1.84
ATP2A3-214ENST00000574999 CC2D2AQ9P2K1 1620 aa26.23■■□□□ 1.79
ATP2A3-214ENST00000574999 EIF4G1Q04637 1599 aaKnown RBP26.23■■□□□ 1.79
ATP2A3-214ENST00000574999 CECR2Q9BXF3 1484 aa26.15■■□□□ 1.78
ATP2A3-214ENST00000574999 NCAPD3P42695 1498 aa25.51■■□□□ 1.67
ATP2A3-214ENST00000574999 ATAD2BQ9ULI0 1458 aa25.46■■□□□ 1.67
ATP2A3-214ENST00000574999 SMARCA4P51532 1647 aa25.42■■□□□ 1.66
ATP2A3-214ENST00000574999 SMARCA2P51531 1590 aa25.34■■□□□ 1.65
ATP2A3-214ENST00000574999 BAZ1AQ9NRL2 1556 aaPredicted RBP25.34■■□□□ 1.65
ATP2A3-214ENST00000574999 HMGXB3Q12766 1538 aa25.27■■□□□ 1.64
ATP2A3-214ENST00000574999 MROH2BQ7Z745 1585 aa25.21■■□□□ 1.63
ATP2A3-214ENST00000574999 PEG3Q9GZU2 1588 aa25.21■■□□□ 1.63
ATP2A3-214ENST00000574999 BAZ1BQ9UIG0 1483 aaKnown RBP25.18■■□□□ 1.62
ATP2A3-214ENST00000574999 ERCC6Q03468 1493 aa25.03■■□□□ 1.6
ATP2A3-214ENST00000574999 NESP48681 1621 aa25.03■■□□□ 1.6
ATP2A3-214ENST00000574999 CUX2O14529 1486 aa24.93■■□□□ 1.58
ATP2A3-214ENST00000574999 WIZO95785 1651 aa24.88■■□□□ 1.57
ATP2A3-214ENST00000574999 LAMC3Q9Y6N6 1575 aa24.84■■□□□ 1.57
ATP2A3-214ENST00000574999 RSF1Q96T23 1441 aaPredicted RBP24.79■■□□□ 1.56
ATP2A3-214ENST00000574999 DNAJC5Q9H3Z4 198 aa24.77■■□□□ 1.56
ATP2A3-214ENST00000574999 CADPSQ9ULU8 1353 aa24.75■■□□□ 1.55
ATP2A3-214ENST00000574999 PDS5BQ9NTI5 1447 aa24.73■■□□□ 1.55
ATP2A3-214ENST00000574999 THOC2Q8NI27 1593 aaKnown RBP24.67■■□□□ 1.54
ATP2A3-214ENST00000574999 KIF21AQ7Z4S6 1674 aa24.63■■□□□ 1.53
ATP2A3-214ENST00000574999 TOP2AP11388 1531 aaKnown RBP24.58■■□□□ 1.53
ATP2A3-214ENST00000574999 CFTRP13569 1480 aa24.5■■□□□ 1.51
ATP2A3-214ENST00000574999 MRC2Q9UBG0 1479 aa24.48■■□□□ 1.51
ATP2A3-214ENST00000574999 FANCD2Q9BXW9 1451 aa24.44■■□□□ 1.5
ATP2A3-214ENST00000574999 CEP164Q9UPV0 1460 aa24.42■■□□□ 1.5
ATP2A3-214ENST00000574999 WDR62O43379 1518 aa24.4■■□□□ 1.5
ATP2A3-214ENST00000574999 CCDC88BA6NC98 1476 aa24.36■■□□□ 1.49
ATP2A3-214ENST00000574999 URB2Q14146 1524 aaKnown RBP24.23■■□□□ 1.47
ATP2A3-214ENST00000574999 PRDM2Q13029 1718 aa24.13■■□□□ 1.45
ATP2A3-214ENST00000574999 TOPBP1Q92547 1522 aa24■■□□□ 1.43
ATP2A3-214ENST00000574999 ABCC8Q09428 1581 aa23.95■■□□□ 1.42
ATP2A3-214ENST00000574999 IFT140Q96RY7 1462 aa23.94■■□□□ 1.42
ATP2A3-214ENST00000574999 ZNF608Q9ULD9 1512 aaPredicted RBP23.91■■□□□ 1.42
ATP2A3-214ENST00000574999 DNMBPQ6XZF7 1577 aa23.89■■□□□ 1.41
ATP2A3-214ENST00000574999 OSCARQ8IYS5 282 aa23.88■■□□□ 1.41
ATP2A3-214ENST00000574999 SUPT5HO00267 1087 aaKnown RBP23.84■■□□□ 1.41
ATP2A3-214ENST00000574999 POLA1P09884 1462 aaPredicted RBP23.76■■□□□ 1.39
ATP2A3-214ENST00000574999 TARBP1Q13395 1621 aaKnown RBP23.76■■□□□ 1.39
ATP2A3-214ENST00000574999 AQRO60306 1485 aaKnown RBP eCLIP23.73■■□□□ 1.392e-8■■■■□ 26.3
ATP2A3-214ENST00000574999 TRIM41Q8WV44 630 aa23.72■■□□□ 1.39
ATP2A3-214ENST00000574999 EIF4G3O43432 1585 aaKnown RBP23.72■■□□□ 1.39
ATP2A3-214ENST00000574999 RAD54L2Q9Y4B4 1467 aa23.69■■□□□ 1.38
ATP2A3-214ENST00000574999 SOGA1O94964 1423 aa23.69■■□□□ 1.38
ATP2A3-214ENST00000574999 CUX1P39880 1505 aa23.66■■□□□ 1.38
ATP2A3-214ENST00000574999 FGD5Q6ZNL6 1462 aa23.63■■□□□ 1.37
ATP2A3-214ENST00000574999 TDRD9Q8NDG6 1382 aaKnown RBP23.63■■□□□ 1.37
ATP2A3-214ENST00000574999 FBLN2P98095 1184 aa23.52■■□□□ 1.36
ATP2A3-214ENST00000574999 WDR97A6NE52 1622 aa23.49■■□□□ 1.35
ATP2A3-214ENST00000574999 RIMBP3CA6NJZ7 1639 aa23.48■■□□□ 1.35
ATP2A3-214ENST00000574999 RIMBP3BA6NNM3 1639 aa23.48■■□□□ 1.35
ATP2A3-214ENST00000574999 RIMBP3Q9UFD9 1639 aa23.48■■□□□ 1.35
ATP2A3-214ENST00000574999 CHD1O14646 1710 aa23.47■■□□□ 1.35
ATP2A3-214ENST00000574999 SNAPC4Q5SXM2 1469 aa23.45■■□□□ 1.34
ATP2A3-214ENST00000574999 ARHGEF11O15085 1522 aa23.44■■□□□ 1.34
ATP2A3-214ENST00000574999 GRIN2BQ13224 1484 aa23.43■■□□□ 1.34
ATP2A3-214ENST00000574999 ABCA10Q8WWZ4 1543 aa23.39■■□□□ 1.34
ATP2A3-214ENST00000574999 MAGI1Q96QZ7 1491 aaPredicted RBP23.39■■□□□ 1.34
ATP2A3-214ENST00000574999 CHMP7Q8WUX9 453 aaPredicted RBP23.39■■□□□ 1.33
ATP2A3-214ENST00000574999 GAPVD1Q14C86 1478 aa23.37■■□□□ 1.33
ATP2A3-214ENST00000574999 WRNQ14191 1432 aaPredicted RBP eCLIP23.34■■□□□ 1.33
ATP2A3-214ENST00000574999 SYNJ2O15056 1496 aa23.32■■□□□ 1.32
ATP2A3-214ENST00000574999 CYB5RLQ6IPT4 315 aa23.32■■□□□ 1.32
ATP2A3-214ENST00000574999 TOP2BQ02880 1626 aa23.31■■□□□ 1.32
ATP2A3-214ENST00000574999 ABCA5Q8WWZ7 1642 aa23.3■■□□□ 1.32
ATP2A3-214ENST00000574999 SYNJ1O43426 1573 aa23.3■■□□□ 1.32
ATP2A3-214ENST00000574999 BIVM-ERCC5R4GMW8 1640 aa23.29■■□□□ 1.32
ATP2A3-214ENST00000574999 CLASP1Q7Z460 1538 aa23.28■■□□□ 1.32
ATP2A3-214ENST00000574999 PBRM1Q86U86 1689 aa23.27■■□□□ 1.32
ATP2A3-214ENST00000574999 ARAP1Q96P48 1450 aa23.24■■□□□ 1.31
ATP2A3-214ENST00000574999 GRIN2AQ12879 1464 aa23.12■■□□□ 1.29
ATP2A3-214ENST00000574999 ADAMTS12P58397 1594 aa23.1■■□□□ 1.29
ATP2A3-214ENST00000574999 FHAD1B1AJZ9 1412 aa23.09■■□□□ 1.29
ATP2A3-214ENST00000574999 ERICH3Q5RHP9 1530 aa23.08■■□□□ 1.29
ATP2A3-214ENST00000574999 NUP160Q12769 1436 aa23.06■■□□□ 1.28
ATP2A3-214ENST00000574999 CEP170Q5SW79 1584 aa23.02■■□□□ 1.28
ATP2A3-214ENST00000574999 TRHP20396 242 aaPredicted RBP22.96■■□□□ 1.27
ATP2A3-214ENST00000574999 ERCC6L2Q5T890 1561 aa22.95■■□□□ 1.26
ATP2A3-214ENST00000574999 IGF1RP08069 1367 aa22.92■■□□□ 1.26
ATP2A3-214ENST00000574999 SHROOM2Q13796 1616 aa22.89■■□□□ 1.25
ATP2A3-214ENST00000574999 KIF27Q86VH2 1401 aa22.88■■□□□ 1.25
ATP2A3-214ENST00000574999 JPH4Q96JJ6 628 aa22.87■■□□□ 1.25
ATP2A3-214ENST00000574999 PRG4Q92954 1404 aaPredicted RBP22.82■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 119.9 ms