RNA–Protein interactions for RNA: ENST00000573325.1

ABR-220, Transcript of ABR, RhoGEF and GTPase activating protein, humanhuman

TSL 3

Gene ABR, Length 471 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABR-220ENST00000573325 NISCHQ9Y2I1 1504 aa28.09■■■□□ 2.09
ABR-220ENST00000573325 ABCC9O60706 1549 aa25.2■■□□□ 1.62
ABR-220ENST00000573325 CCDC180Q9P1Z9 1646 aa25.12■■□□□ 1.61
ABR-220ENST00000573325 DNAJC5BQ9UF47 199 aa23.92■■□□□ 1.42
ABR-220ENST00000573325 RB1CC1Q8TDY2 1594 aa23.91■■□□□ 1.42
ABR-220ENST00000573325 NACADO15069 1562 aa23.8■■□□□ 1.4
ABR-220ENST00000573325 MYO15BQ96JP2 1530 aa23.58■■□□□ 1.36
ABR-220ENST00000573325 PABPN1Q86U42 306 aaKnown RBP eCLIP23.48■■□□□ 1.35
ABR-220ENST00000573325 DCAF8L2P0C7V8 631 aa23.46■■□□□ 1.35
ABR-220ENST00000573325 BICRAQ9NZM4 1560 aa23.43■■□□□ 1.34
ABR-220ENST00000573325 UNC13AQ9UPW8 1703 aa23.42■■□□□ 1.34
ABR-220ENST00000573325 ZCCHC6Q5VYS8 1495 aaKnown RBP23.29■■□□□ 1.32
ABR-220ENST00000573325 DCAF1Q9Y4B6 1507 aa23.23■■□□□ 1.31
ABR-220ENST00000573325 SHROOM4Q9ULL8 1493 aa23■■□□□ 1.27
ABR-220ENST00000573325 SCRIBQ14160 1630 aa22.85■■□□□ 1.25
ABR-220ENST00000573325 CC2D2AQ9P2K1 1620 aa22.78■■□□□ 1.24
ABR-220ENST00000573325 EIF4G1Q04637 1599 aaKnown RBP22.74■■□□□ 1.23
ABR-220ENST00000573325 CECR2Q9BXF3 1484 aa22.71■■□□□ 1.23
ABR-220ENST00000573325 NCAPD3P42695 1498 aa22.09■■□□□ 1.13
ABR-220ENST00000573325 ATAD2BQ9ULI0 1458 aa21.97■■□□□ 1.11
ABR-220ENST00000573325 DNAJC5Q9H3Z4 198 aa21.89■■□□□ 1.09
ABR-220ENST00000573325 SMARCA4P51532 1647 aa21.87■■□□□ 1.09
ABR-220ENST00000573325 HMGXB3Q12766 1538 aa21.83■■□□□ 1.09
ABR-220ENST00000573325 SMARCA2P51531 1590 aa21.79■■□□□ 1.08
ABR-220ENST00000573325 PEG3Q9GZU2 1588 aa21.75■■□□□ 1.07
ABR-220ENST00000573325 CUX2O14529 1486 aa21.75■■□□□ 1.07
ABR-220ENST00000573325 BAZ1AQ9NRL2 1556 aaPredicted RBP21.72■■□□□ 1.07
ABR-220ENST00000573325 NESP48681 1621 aa21.71■■□□□ 1.07
ABR-220ENST00000573325 MROH2BQ7Z745 1585 aa21.67■■□□□ 1.06
ABR-220ENST00000573325 ERCC6Q03468 1493 aa21.63■■□□□ 1.05
ABR-220ENST00000573325 BAZ1BQ9UIG0 1483 aaKnown RBP21.63■■□□□ 1.05
ABR-220ENST00000573325 THOC2Q8NI27 1593 aaKnown RBP21.48■■□□□ 1.03
ABR-220ENST00000573325 LAMC3Q9Y6N6 1575 aa21.46■■□□□ 1.03
ABR-220ENST00000573325 CADPSQ9ULU8 1353 aa21.36■■□□□ 1.01
ABR-220ENST00000573325 WIZO95785 1651 aa21.31■■□□□ 1
ABR-220ENST00000573325 PDS5BQ9NTI5 1447 aa21.31■■□□□ 1
ABR-220ENST00000573325 KIF21AQ7Z4S6 1674 aa21.31■■□□□ 1
ABR-220ENST00000573325 RSF1Q96T23 1441 aaPredicted RBP21.22■□□□□ 0.99
ABR-220ENST00000573325 MRC2Q9UBG0 1479 aa21.17■□□□□ 0.98
ABR-220ENST00000573325 WDR62O43379 1518 aa21.17■□□□□ 0.98
ABR-220ENST00000573325 CFTRP13569 1480 aa21.13■□□□□ 0.97
ABR-220ENST00000573325 FANCD2Q9BXW9 1451 aa21.06■□□□□ 0.96
ABR-220ENST00000573325 TOP2AP11388 1531 aaKnown RBP21.05■□□□□ 0.96
ABR-220ENST00000573325 CEP164Q9UPV0 1460 aa21.03■□□□□ 0.96
ABR-220ENST00000573325 URB2Q14146 1524 aaKnown RBP20.97■□□□□ 0.95
ABR-220ENST00000573325 CCDC88BA6NC98 1476 aa20.87■□□□□ 0.93
ABR-220ENST00000573325 OSCARQ8IYS5 282 aa20.71■□□□□ 0.91
ABR-220ENST00000573325 ZNF608Q9ULD9 1512 aaPredicted RBP20.71■□□□□ 0.91
ABR-220ENST00000573325 PRDM2Q13029 1718 aa20.7■□□□□ 0.9
ABR-220ENST00000573325 TOPBP1Q92547 1522 aa20.68■□□□□ 0.9
ABR-220ENST00000573325 TRIM41Q8WV44 630 aa20.68■□□□□ 0.9
ABR-220ENST00000573325 IFT140Q96RY7 1462 aa20.65■□□□□ 0.9
ABR-220ENST00000573325 DNMBPQ6XZF7 1577 aa20.55■□□□□ 0.88
ABR-220ENST00000573325 ABCC8Q09428 1581 aa20.55■□□□□ 0.88
ABR-220ENST00000573325 TARBP1Q13395 1621 aaKnown RBP20.54■□□□□ 0.88
ABR-220ENST00000573325 EIF4G3O43432 1585 aaKnown RBP20.49■□□□□ 0.87
ABR-220ENST00000573325 POLA1P09884 1462 aaPredicted RBP20.49■□□□□ 0.87
ABR-220ENST00000573325 AQRO60306 1485 aaKnown RBP eCLIP20.48■□□□□ 0.87
ABR-220ENST00000573325 RIMBP3CA6NJZ7 1639 aa20.46■□□□□ 0.87
ABR-220ENST00000573325 RIMBP3BA6NNM3 1639 aa20.46■□□□□ 0.87
ABR-220ENST00000573325 RIMBP3Q9UFD9 1639 aa20.46■□□□□ 0.87
ABR-220ENST00000573325 ARHGEF11O15085 1522 aa20.43■□□□□ 0.86
ABR-220ENST00000573325 RAD54L2Q9Y4B4 1467 aa20.4■□□□□ 0.86
ABR-220ENST00000573325 CUX1P39880 1505 aa20.34■□□□□ 0.85
ABR-220ENST00000573325 SOGA1O94964 1423 aa20.33■□□□□ 0.84
ABR-220ENST00000573325 TDRD9Q8NDG6 1382 aaKnown RBP20.33■□□□□ 0.84
ABR-220ENST00000573325 FGD5Q6ZNL6 1462 aa20.3■□□□□ 0.84
ABR-220ENST00000573325 CHD1O14646 1710 aa20.3■□□□□ 0.84
ABR-220ENST00000573325 ARAP1Q96P48 1450 aa20.27■□□□□ 0.84
ABR-220ENST00000573325 WDR97A6NE52 1622 aa20.24■□□□□ 0.83
ABR-220ENST00000573325 SNAPC4Q5SXM2 1469 aa20.22■□□□□ 0.83
ABR-220ENST00000573325 CLASP1Q7Z460 1538 aa20.22■□□□□ 0.83
ABR-220ENST00000573325 CYB5RLQ6IPT4 315 aa20.21■□□□□ 0.83
ABR-220ENST00000573325 MAGI1Q96QZ7 1491 aaPredicted RBP20.17■□□□□ 0.82
ABR-220ENST00000573325 GRIN2BQ13224 1484 aa20.16■□□□□ 0.82
ABR-220ENST00000573325 FBLN2P98095 1184 aa20.15■□□□□ 0.82
ABR-220ENST00000573325 ABCA10Q8WWZ4 1543 aa20.12■□□□□ 0.81
ABR-220ENST00000573325 SYNJ2O15056 1496 aa20.11■□□□□ 0.81
ABR-220ENST00000573325 GAPVD1Q14C86 1478 aa20.08■□□□□ 0.81
ABR-220ENST00000573325 ABCA5Q8WWZ7 1642 aa20.08■□□□□ 0.8
ABR-220ENST00000573325 CHMP7Q8WUX9 453 aaPredicted RBP20.05■□□□□ 0.8
ABR-220ENST00000573325 SYNJ1O43426 1573 aa20.03■□□□□ 0.8
ABR-220ENST00000573325 SUPT5HO00267 1087 aaKnown RBP20■□□□□ 0.79
ABR-220ENST00000573325 PBRM1Q86U86 1689 aa19.99■□□□□ 0.79
ABR-220ENST00000573325 WRNQ14191 1432 aaPredicted RBP eCLIP19.95■□□□□ 0.78
ABR-220ENST00000573325 TOP2BQ02880 1626 aa19.94■□□□□ 0.78
ABR-220ENST00000573325 NUP160Q12769 1436 aa19.94■□□□□ 0.78
ABR-220ENST00000573325 BIVM-ERCC5R4GMW8 1640 aa19.93■□□□□ 0.78
ABR-220ENST00000573325 GRIN2AQ12879 1464 aa19.92■□□□□ 0.78
ABR-220ENST00000573325 ERCC6L2Q5T890 1561 aa19.91■□□□□ 0.78
ABR-220ENST00000573325 ADAMTS12P58397 1594 aa19.9■□□□□ 0.78
ABR-220ENST00000573325 CEP170Q5SW79 1584 aa19.88■□□□□ 0.77
ABR-220ENST00000573325 TRHP20396 242 aaPredicted RBP19.86■□□□□ 0.77
ABR-220ENST00000573325 FHAD1B1AJZ9 1412 aa19.84■□□□□ 0.77
ABR-220ENST00000573325 SHROOM2Q13796 1616 aa19.82■□□□□ 0.76
ABR-220ENST00000573325 ERICH3Q5RHP9 1530 aa19.81■□□□□ 0.76
ABR-220ENST00000573325 JPH4Q96JJ6 628 aa19.65■□□□□ 0.74
ABR-220ENST00000573325 IGF1RP08069 1367 aa19.65■□□□□ 0.74
ABR-220ENST00000573325 PRG4Q92954 1404 aaPredicted RBP19.65■□□□□ 0.74
ABR-220ENST00000573325 RUSC2Q8N2Y8 1516 aa19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms