RNA–Protein interactions for RNA: ENST00000569801.5

SNX29-208, Transcript of sorting nexin 29, humanhuman

TSL 4

Gene SNX29, Length 540 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX29-208ENST00000569801 DNAJC5BQ9UF47 199 aa22.08■■□□□ 1.13
SNX29-208ENST00000569801 DNAJC5Q9H3Z4 198 aa21.66■■□□□ 1.06
SNX29-208ENST00000569801 ABCC9O60706 1549 aa21.51■■□□□ 1.03
SNX29-208ENST00000569801 NISCHQ9Y2I1 1504 aa20.79■□□□□ 0.92
SNX29-208ENST00000569801 TRIM41Q8WV44 630 aa19.94■□□□□ 0.78
SNX29-208ENST00000569801 PABPN1Q86U42 306 aaKnown RBP eCLIP19.86■□□□□ 0.77
SNX29-208ENST00000569801 CECR2Q9BXF3 1484 aa19.57■□□□□ 0.72
SNX29-208ENST00000569801 RB1CC1Q8TDY2 1594 aa19.44■□□□□ 0.7
SNX29-208ENST00000569801 AEBP2Q6ZN18 517 aaPredicted RBP19.32■□□□□ 0.68
SNX29-208ENST00000569801 CCDC180Q9P1Z9 1646 aa19.29■□□□□ 0.68
SNX29-208ENST00000569801 CUX2O14529 1486 aa19.26■□□□□ 0.67
SNX29-208ENST00000569801 CC2D2AQ9P2K1 1620 aa19.19■□□□□ 0.66
SNX29-208ENST00000569801 BICRAQ9NZM4 1560 aa18.98■□□□□ 0.63
SNX29-208ENST00000569801 ILDR1Q86SU0 546 aaPredicted RBP18.96■□□□□ 0.63
SNX29-208ENST00000569801 NACADO15069 1562 aa18.85■□□□□ 0.61
SNX29-208ENST00000569801 UNC13AQ9UPW8 1703 aa18.78■□□□□ 0.6
SNX29-208ENST00000569801 ERCC6Q03468 1493 aa18.69■□□□□ 0.58
SNX29-208ENST00000569801 EIF4G1Q04637 1599 aaKnown RBP18.68■□□□□ 0.58
SNX29-208ENST00000569801 DCAF8L2P0C7V8 631 aa18.66■□□□□ 0.58
SNX29-208ENST00000569801 SHROOM4Q9ULL8 1493 aa18.46■□□□□ 0.55
SNX29-208ENST00000569801 TRHP20396 242 aaPredicted RBP18.41■□□□□ 0.54
SNX29-208ENST00000569801 OSCARQ8IYS5 282 aa18.22■□□□□ 0.51
SNX29-208ENST00000569801 RIMBP3CA6NJZ7 1639 aa17.98■□□□□ 0.47
SNX29-208ENST00000569801 RIMBP3BA6NNM3 1639 aa17.98■□□□□ 0.47
SNX29-208ENST00000569801 RIMBP3Q9UFD9 1639 aa17.98■□□□□ 0.47
SNX29-208ENST00000569801 CYB5RLQ6IPT4 315 aa17.97■□□□□ 0.47
SNX29-208ENST00000569801 THOC2Q8NI27 1593 aaKnown RBP17.95■□□□□ 0.46
SNX29-208ENST00000569801 MYO15BQ96JP2 1530 aa17.93■□□□□ 0.46
SNX29-208ENST00000569801 NESP48681 1621 aa17.9■□□□□ 0.46
SNX29-208ENST00000569801 BAZ1AQ9NRL2 1556 aaPredicted RBP17.87■□□□□ 0.45
SNX29-208ENST00000569801 SCRIBQ14160 1630 aa17.8■□□□□ 0.44
SNX29-208ENST00000569801 ARHGEF11O15085 1522 aa17.79■□□□□ 0.44
SNX29-208ENST00000569801 SOCS7O14512 581 aa17.78■□□□□ 0.44
SNX29-208ENST00000569801 LMTK3Q96Q04 1460 aa17.75■□□□□ 0.43
SNX29-208ENST00000569801 SMARCA2P51531 1590 aa17.72■□□□□ 0.43
SNX29-208ENST00000569801 FBXO41Q8TF61 875 aa17.63■□□□□ 0.41
SNX29-208ENST00000569801 ILDR2Q71H61 639 aa17.59■□□□□ 0.41
SNX29-208ENST00000569801 NCAPD3P42695 1498 aa17.53■□□□□ 0.4
SNX29-208ENST00000569801 ARAP1Q96P48 1450 aa17.51■□□□□ 0.39
SNX29-208ENST00000569801 KDM4FA0A1W2PPD8 638 aa17.48■□□□□ 0.39
SNX29-208ENST00000569801 PDS5BQ9NTI5 1447 aa17.42■□□□□ 0.38
SNX29-208ENST00000569801 KIF21AQ7Z4S6 1674 aa17.37■□□□□ 0.37
SNX29-208ENST00000569801 MRC2Q9UBG0 1479 aa17.35■□□□□ 0.37
SNX29-208ENST00000569801 LAMC3Q9Y6N6 1575 aa17.32■□□□□ 0.36
SNX29-208ENST00000569801 WDR62O43379 1518 aa17.31■□□□□ 0.36
SNX29-208ENST00000569801 DISP3Q9P2K9 1392 aa17.27■□□□□ 0.35
SNX29-208ENST00000569801 ERCC6L2Q5T890 1561 aa17.25■□□□□ 0.35
SNX29-208ENST00000569801 ATAD2BQ9ULI0 1458 aa17.19■□□□□ 0.34
SNX29-208ENST00000569801 HMGXB3Q12766 1538 aa17.09■□□□□ 0.33
SNX29-208ENST00000569801 HECW2Q9P2P5 1572 aa17.09■□□□□ 0.33
SNX29-208ENST00000569801 RSF1Q96T23 1441 aaPredicted RBP17.08■□□□□ 0.32
SNX29-208ENST00000569801 ZCCHC6Q5VYS8 1495 aaKnown RBP17.07■□□□□ 0.32
SNX29-208ENST00000569801 SYNJ2O15056 1496 aa16.99■□□□□ 0.31
SNX29-208ENST00000569801 DCAF1Q9Y4B6 1507 aa16.98■□□□□ 0.31
SNX29-208ENST00000569801 CADPSQ9ULU8 1353 aa16.95■□□□□ 0.3
SNX29-208ENST00000569801 BAZ1BQ9UIG0 1483 aaKnown RBP16.89■□□□□ 0.29
SNX29-208ENST00000569801 CEP164Q9UPV0 1460 aa16.87■□□□□ 0.29
SNX29-208ENST00000569801 FBLN2P98095 1184 aa16.86■□□□□ 0.29
SNX29-208ENST00000569801 ZNF608Q9ULD9 1512 aaPredicted RBP16.85■□□□□ 0.29
SNX29-208ENST00000569801 ADGRL1O94910 1474 aa16.74■□□□□ 0.27
SNX29-208ENST00000569801 SMARCA4P51532 1647 aa16.74■□□□□ 0.27
SNX29-208ENST00000569801 FANCD2Q9BXW9 1451 aa16.72■□□□□ 0.27
SNX29-208ENST00000569801 URB2Q14146 1524 aaKnown RBP16.69■□□□□ 0.26
SNX29-208ENST00000569801 SPATA31D1Q6ZQQ2 1576 aa16.68■□□□□ 0.26
SNX29-208ENST00000569801 CHD1O14646 1710 aa16.65■□□□□ 0.26
SNX29-208ENST00000569801 GAPVD1Q14C86 1478 aa16.64■□□□□ 0.25
SNX29-208ENST00000569801 IFT140Q96RY7 1462 aa16.63■□□□□ 0.25
SNX29-208ENST00000569801 FAM69CQ0P6D2 419 aa16.58■□□□□ 0.24
SNX29-208ENST00000569801 CLASP1Q7Z460 1538 aa16.55■□□□□ 0.24
SNX29-208ENST00000569801 KDM6BO15054 1643 aa16.55■□□□□ 0.24
SNX29-208ENST00000569801 KIF13AQ9H1H9 1805 aa16.52■□□□□ 0.23
SNX29-208ENST00000569801 CERKQ8TCT0 537 aa16.51■□□□□ 0.23
SNX29-208ENST00000569801 EIF4G3O43432 1585 aaKnown RBP16.49■□□□□ 0.23
SNX29-208ENST00000569801 AQRO60306 1485 aaKnown RBP eCLIP16.48■□□□□ 0.23
SNX29-208ENST00000569801 PEG3Q9GZU2 1588 aa16.38■□□□□ 0.21
SNX29-208ENST00000569801 ABCC10Q5T3U5 1492 aa16.38■□□□□ 0.21
SNX29-208ENST00000569801 CHMP7Q8WUX9 453 aaPredicted RBP16.38■□□□□ 0.21
SNX29-208ENST00000569801 SYNJ1O43426 1573 aa16.34■□□□□ 0.21
SNX29-208ENST00000569801 CFTRP13569 1480 aa16.29■□□□□ 0.2
SNX29-208ENST00000569801 SNAPC4Q5SXM2 1469 aa16.19■□□□□ 0.18
SNX29-208ENST00000569801 MROH2BQ7Z745 1585 aa16.17■□□□□ 0.18
SNX29-208ENST00000569801 DIP2BQ9P265 1576 aa16.17■□□□□ 0.18
SNX29-208ENST00000569801 TOPBP1Q92547 1522 aa16.15■□□□□ 0.18
SNX29-208ENST00000569801 NPM1P06748 294 aaKnown RBP eCLIP16.14■□□□□ 0.17
SNX29-208ENST00000569801 TOP2BQ02880 1626 aa16.12■□□□□ 0.17
SNX29-208ENST00000569801 TDRD9Q8NDG6 1382 aaKnown RBP16.12■□□□□ 0.17
SNX29-208ENST00000569801 TARBP1Q13395 1621 aaKnown RBP16.07■□□□□ 0.16
SNX29-208ENST00000569801 TSPOAP1O95153 1857 aa16.06■□□□□ 0.16
SNX29-208ENST00000569801 MAPKBP1O60336 1514 aa16.04■□□□□ 0.16
SNX29-208ENST00000569801 COL17A1Q9UMD9 1497 aaPredicted RBP16.03■□□□□ 0.16
SNX29-208ENST00000569801 MAGI1Q96QZ7 1491 aaPredicted RBP16.02■□□□□ 0.15
SNX29-208ENST00000569801 HSPA2P54652 639 aa16.01■□□□□ 0.15
SNX29-208ENST00000569801 PCF11O94913 1555 aaKnown RBP16■□□□□ 0.15
SNX29-208ENST00000569801 ABCC8Q09428 1581 aa15.94■□□□□ 0.14
SNX29-208ENST00000569801 CEP170Q5SW79 1584 aa15.94■□□□□ 0.14
SNX29-208ENST00000569801 PTPRMP28827 1452 aa15.92■□□□□ 0.14
SNX29-208ENST00000569801 RAD54L2Q9Y4B4 1467 aa15.91■□□□□ 0.14
SNX29-208ENST00000569801 POLA1P09884 1462 aaPredicted RBP15.87■□□□□ 0.13
SNX29-208ENST00000569801 CHIC1Q5VXU3 224 aa15.87■□□□□ 0.13
SNX29-208ENST00000569801 GRIN2BQ13224 1484 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms