RNA–Protein interactions for RNA: ENST00000569062.1

ABCA3-206, Transcript of ATP binding cassette subfamily A member 3, humanhuman

TSL 5

Gene ABCA3, Length 900 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3-206ENST00000569062 NISCHQ9Y2I1 1504 aa49.67■■■■■ 5.54
ABCA3-206ENST00000569062 CCDC180Q9P1Z9 1646 aa44.34■■■■■ 4.69
ABCA3-206ENST00000569062 ABCC9O60706 1549 aa43.78■■■■■ 4.6
ABCA3-206ENST00000569062 RB1CC1Q8TDY2 1594 aa41.9■■■■■ 4.3
ABCA3-206ENST00000569062 NACADO15069 1562 aa41.75■■■■■ 4.27
ABCA3-206ENST00000569062 DCAF8L2P0C7V8 631 aa41.68■■■■■ 4.26
ABCA3-206ENST00000569062 MYO15BQ96JP2 1530 aa41.34■■■■■ 4.21
ABCA3-206ENST00000569062 ZCCHC6Q5VYS8 1495 aaKnown RBP41.29■■■■■ 4.2
ABCA3-206ENST00000569062 UNC13AQ9UPW8 1703 aa41.07■■■■■ 4.17
ABCA3-206ENST00000569062 DCAF1Q9Y4B6 1507 aa41.03■■■■■ 4.16
ABCA3-206ENST00000569062 PABPN1Q86U42 306 aaKnown RBP eCLIP40.84■■■■■ 4.13
ABCA3-206ENST00000569062 BICRAQ9NZM4 1560 aa40.71■■■■■ 4.11
ABCA3-206ENST00000569062 DNAJC5BQ9UF47 199 aa40.56■■■■■ 4.08
ABCA3-206ENST00000569062 SCRIBQ14160 1630 aa40.47■■■■■ 4.07
ABCA3-206ENST00000569062 SHROOM4Q9ULL8 1493 aa40.12■■■■■ 4.01
ABCA3-206ENST00000569062 EIF4G1Q04637 1599 aaKnown RBP39.64■■■■□ 3.94
ABCA3-206ENST00000569062 CC2D2AQ9P2K1 1620 aa39.59■■■■□ 3.93
ABCA3-206ENST00000569062 CECR2Q9BXF3 1484 aa39.35■■■■□ 3.89
ABCA3-206ENST00000569062 SMARCA4P51532 1647 aa38.65■■■■□ 3.78
ABCA3-206ENST00000569062 NCAPD3P42695 1498 aa38.53■■■■□ 3.76
ABCA3-206ENST00000569062 ATAD2BQ9ULI0 1458 aa38.51■■■■□ 3.76
ABCA3-206ENST00000569062 BAZ1AQ9NRL2 1556 aaPredicted RBP38.51■■■■□ 3.76
ABCA3-206ENST00000569062 SMARCA2P51531 1590 aa38.42■■■■□ 3.74
ABCA3-206ENST00000569062 HMGXB3Q12766 1538 aa38.31■■■■□ 3.72
ABCA3-206ENST00000569062 MROH2BQ7Z745 1585 aa38.31■■■■□ 3.72
ABCA3-206ENST00000569062 PEG3Q9GZU2 1588 aa38.25■■■■□ 3.71
ABCA3-206ENST00000569062 BAZ1BQ9UIG0 1483 aaKnown RBP38.17■■■■□ 3.7
ABCA3-206ENST00000569062 WIZO95785 1651 aa37.92■■■■□ 3.66
ABCA3-206ENST00000569062 NESP48681 1621 aa37.79■■■■□ 3.64
ABCA3-206ENST00000569062 ERCC6Q03468 1493 aa37.72■■■■□ 3.63
ABCA3-206ENST00000569062 RSF1Q96T23 1441 aaPredicted RBP37.7■■■■□ 3.62
ABCA3-206ENST00000569062 LAMC3Q9Y6N6 1575 aa37.59■■■■□ 3.61
ABCA3-206ENST00000569062 CUX2O14529 1486 aa37.45■■■■□ 3.59
ABCA3-206ENST00000569062 TOP2AP11388 1531 aaKnown RBP37.42■■■■□ 3.58
ABCA3-206ENST00000569062 CADPSQ9ULU8 1353 aa37.38■■■■□ 3.57
ABCA3-206ENST00000569062 KIF21AQ7Z4S6 1674 aa37.37■■■■□ 3.57
ABCA3-206ENST00000569062 PDS5BQ9NTI5 1447 aa37.31■■■■□ 3.56
ABCA3-206ENST00000569062 THOC2Q8NI27 1593 aaKnown RBP37.29■■■■□ 3.56
ABCA3-206ENST00000569062 CFTRP13569 1480 aa37.09■■■■□ 3.53
ABCA3-206ENST00000569062 CCDC88BA6NC98 1476 aa37■■■■□ 3.51
ABCA3-206ENST00000569062 MRC2Q9UBG0 1479 aa36.98■■■■□ 3.51
ABCA3-206ENST00000569062 FANCD2Q9BXW9 1451 aa36.97■■■■□ 3.51
ABCA3-206ENST00000569062 CEP164Q9UPV0 1460 aa36.95■■■■□ 3.51
ABCA3-206ENST00000569062 WDR62O43379 1518 aa36.89■■■■□ 3.5
ABCA3-206ENST00000569062 PRDM2Q13029 1718 aa36.85■■■■□ 3.49
ABCA3-206ENST00000569062 DNAJC5Q9H3Z4 198 aa36.77■■■■□ 3.48
ABCA3-206ENST00000569062 URB2Q14146 1524 aaKnown RBP36.65■■■■□ 3.46
ABCA3-206ENST00000569062 SUPT5HO00267 1087 aaKnown RBP36.48■■■■□ 3.43
ABCA3-206ENST00000569062 TOPBP1Q92547 1522 aa36.35■■■■□ 3.41
ABCA3-206ENST00000569062 DNMBPQ6XZF7 1577 aa36.27■■■■□ 3.4
ABCA3-206ENST00000569062 ABCC8Q09428 1581 aa36.27■■■■□ 3.4
ABCA3-206ENST00000569062 IFT140Q96RY7 1462 aa36.18■■■■□ 3.38
ABCA3-206ENST00000569062 ZNF608Q9ULD9 1512 aaPredicted RBP36.12■■■■□ 3.37
ABCA3-206ENST00000569062 POLA1P09884 1462 aaPredicted RBP36.02■■■■□ 3.36
ABCA3-206ENST00000569062 TARBP1Q13395 1621 aaKnown RBP36.01■■■■□ 3.36
ABCA3-206ENST00000569062 EIF4G3O43432 1585 aaKnown RBP35.96■■■■□ 3.35
ABCA3-206ENST00000569062 CUX1P39880 1505 aa35.95■■■■□ 3.35
ABCA3-206ENST00000569062 RAD54L2Q9Y4B4 1467 aa35.9■■■■□ 3.34
ABCA3-206ENST00000569062 FGD5Q6ZNL6 1462 aa35.88■■■■□ 3.33
ABCA3-206ENST00000569062 AQRO60306 1485 aaKnown RBP eCLIP35.86■■■■□ 3.33
ABCA3-206ENST00000569062 SOGA1O94964 1423 aa35.85■■■■□ 3.33
ABCA3-206ENST00000569062 OSCARQ8IYS5 282 aa35.83■■■■□ 3.33
ABCA3-206ENST00000569062 TDRD9Q8NDG6 1382 aaKnown RBP35.71■■■■□ 3.31
ABCA3-206ENST00000569062 WDR97A6NE52 1622 aa35.65■■■■□ 3.3
ABCA3-206ENST00000569062 CHD1O14646 1710 aa35.62■■■■□ 3.29
ABCA3-206ENST00000569062 BIVM-ERCC5R4GMW8 1640 aa35.55■■■■□ 3.28
ABCA3-206ENST00000569062 WRNQ14191 1432 aaPredicted RBP eCLIP35.54■■■■□ 3.28
ABCA3-206ENST00000569062 SYNJ1O43426 1573 aa35.53■■■■□ 3.28
ABCA3-206ENST00000569062 TOP2BQ02880 1626 aa35.53■■■■□ 3.28
ABCA3-206ENST00000569062 SNAPC4Q5SXM2 1469 aa35.5■■■■□ 3.27
ABCA3-206ENST00000569062 ABCA10Q8WWZ4 1543 aa35.49■■■■□ 3.27
ABCA3-206ENST00000569062 FBLN2P98095 1184 aa35.48■■■■□ 3.27
ABCA3-206ENST00000569062 GRIN2BQ13224 1484 aa35.46■■■■□ 3.27
ABCA3-206ENST00000569062 PBRM1Q86U86 1689 aa35.45■■■■□ 3.27
ABCA3-206ENST00000569062 TRIM41Q8WV44 630 aa35.43■■■■□ 3.26
ABCA3-206ENST00000569062 GAPVD1Q14C86 1478 aa35.42■■■■□ 3.26
ABCA3-206ENST00000569062 ABCA5Q8WWZ7 1642 aa35.42■■■■□ 3.26
ABCA3-206ENST00000569062 MAGI1Q96QZ7 1491 aaPredicted RBP35.41■■■■□ 3.26
ABCA3-206ENST00000569062 RIMBP3CA6NJZ7 1639 aa35.37■■■■□ 3.25
ABCA3-206ENST00000569062 RIMBP3BA6NNM3 1639 aa35.37■■■■□ 3.25
ABCA3-206ENST00000569062 RIMBP3Q9UFD9 1639 aa35.37■■■■□ 3.25
ABCA3-206ENST00000569062 CHMP7Q8WUX9 453 aaPredicted RBP35.3■■■■□ 3.24
ABCA3-206ENST00000569062 ARHGEF11O15085 1522 aa35.29■■■■□ 3.24
ABCA3-206ENST00000569062 SYNJ2O15056 1496 aa35.29■■■■□ 3.24
ABCA3-206ENST00000569062 CLASP1Q7Z460 1538 aa35.16■■■■□ 3.22
ABCA3-206ENST00000569062 ADAMTS12P58397 1594 aa35.1■■■■□ 3.21
ABCA3-206ENST00000569062 ERICH3Q5RHP9 1530 aa35.06■■■■□ 3.2
ABCA3-206ENST00000569062 GRIN2AQ12879 1464 aa35.03■■■■□ 3.2
ABCA3-206ENST00000569062 FHAD1B1AJZ9 1412 aa34.98■■■■□ 3.19
ABCA3-206ENST00000569062 ARAP1Q96P48 1450 aa34.98■■■■□ 3.19
ABCA3-206ENST00000569062 CYB5RLQ6IPT4 315 aa34.98■■■■□ 3.19
ABCA3-206ENST00000569062 CEP170Q5SW79 1584 aa34.91■■■■□ 3.18
ABCA3-206ENST00000569062 NUP160Q12769 1436 aa34.87■■■■□ 3.17
ABCA3-206ENST00000569062 KIF27Q86VH2 1401 aa34.81■■■■□ 3.16
ABCA3-206ENST00000569062 IGF1RP08069 1367 aa34.74■■■■□ 3.15
ABCA3-206ENST00000569062 ERCC6L2Q5T890 1561 aa34.7■■■■□ 3.15
ABCA3-206ENST00000569062 SHROOM2Q13796 1616 aa34.7■■■■□ 3.14
ABCA3-206ENST00000569062 CUL7Q14999 1698 aa34.68■■■■□ 3.14
ABCA3-206ENST00000569062 RUSC2Q8N2Y8 1516 aa34.6■■■■□ 3.13
ABCA3-206ENST00000569062 CARMIL1Q5VZK9 1371 aa34.51■■■■□ 3.12
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms