RNA–Protein interactions for RNA: ENST00000568949.1

SNX29-207, Transcript of sorting nexin 29, humanhuman

TSL 3

Gene SNX29, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX29-207ENST00000568949 NISCHQ9Y2I1 1504 aa31.83■■■□□ 2.69
SNX29-207ENST00000568949 ABCC9O60706 1549 aa29.05■■■□□ 2.24
SNX29-207ENST00000568949 CCDC180Q9P1Z9 1646 aa28.75■■■□□ 2.19
SNX29-207ENST00000568949 DNAJC5BQ9UF47 199 aa27.6■■■□□ 2.01
SNX29-207ENST00000568949 RB1CC1Q8TDY2 1594 aa27.53■■■□□ 2
SNX29-207ENST00000568949 NACADO15069 1562 aa27.28■■□□□ 1.96
SNX29-207ENST00000568949 DCAF8L2P0C7V8 631 aa26.98■■□□□ 1.91
SNX29-207ENST00000568949 PABPN1Q86U42 306 aaKnown RBP eCLIP26.98■■□□□ 1.91
SNX29-207ENST00000568949 UNC13AQ9UPW8 1703 aa26.88■■□□□ 1.89
SNX29-207ENST00000568949 MYO15BQ96JP2 1530 aa26.81■■□□□ 1.88
SNX29-207ENST00000568949 BICRAQ9NZM4 1560 aa26.73■■□□□ 1.87
SNX29-207ENST00000568949 SHROOM4Q9ULL8 1493 aa26.4■■□□□ 1.82
SNX29-207ENST00000568949 DCAF1Q9Y4B6 1507 aa26.31■■□□□ 1.8
SNX29-207ENST00000568949 ZCCHC6Q5VYS8 1495 aaKnown RBP26.3■■□□□ 1.8
SNX29-207ENST00000568949 CC2D2AQ9P2K1 1620 aa26.25■■□□□ 1.79
SNX29-207ENST00000568949 CECR2Q9BXF3 1484 aa26.23■■□□□ 1.79
SNX29-207ENST00000568949 SCRIBQ14160 1630 aa26.1■■□□□ 1.77
SNX29-207ENST00000568949 EIF4G1Q04637 1599 aaKnown RBP26.1■■□□□ 1.77
SNX29-207ENST00000568949 DNAJC5Q9H3Z4 198 aa25.66■■□□□ 1.7
SNX29-207ENST00000568949 CUX2O14529 1486 aa25.25■■□□□ 1.63
SNX29-207ENST00000568949 NCAPD3P42695 1498 aa25.19■■□□□ 1.62
SNX29-207ENST00000568949 ERCC6Q03468 1493 aa25.13■■□□□ 1.61
SNX29-207ENST00000568949 ATAD2BQ9ULI0 1458 aa25.03■■□□□ 1.6
SNX29-207ENST00000568949 SMARCA2P51531 1590 aa24.96■■□□□ 1.59
SNX29-207ENST00000568949 HMGXB3Q12766 1538 aa24.95■■□□□ 1.58
SNX29-207ENST00000568949 SMARCA4P51532 1647 aa24.9■■□□□ 1.58
SNX29-207ENST00000568949 NESP48681 1621 aa24.84■■□□□ 1.57
SNX29-207ENST00000568949 BAZ1BQ9UIG0 1483 aaKnown RBP24.76■■□□□ 1.55
SNX29-207ENST00000568949 BAZ1AQ9NRL2 1556 aaPredicted RBP24.74■■□□□ 1.55
SNX29-207ENST00000568949 PEG3Q9GZU2 1588 aa24.7■■□□□ 1.54
SNX29-207ENST00000568949 THOC2Q8NI27 1593 aaKnown RBP24.69■■□□□ 1.54
SNX29-207ENST00000568949 LAMC3Q9Y6N6 1575 aa24.67■■□□□ 1.54
SNX29-207ENST00000568949 PDS5BQ9NTI5 1447 aa24.54■■□□□ 1.52
SNX29-207ENST00000568949 KIF21AQ7Z4S6 1674 aa24.51■■□□□ 1.51
SNX29-207ENST00000568949 MROH2BQ7Z745 1585 aa24.5■■□□□ 1.51
SNX29-207ENST00000568949 CADPSQ9ULU8 1353 aa24.39■■□□□ 1.49
SNX29-207ENST00000568949 MRC2Q9UBG0 1479 aa24.33■■□□□ 1.49
SNX29-207ENST00000568949 TRIM41Q8WV44 630 aa24.31■■□□□ 1.48
SNX29-207ENST00000568949 WDR62O43379 1518 aa24.29■■□□□ 1.48
SNX29-207ENST00000568949 WIZO95785 1651 aa24.18■■□□□ 1.46
SNX29-207ENST00000568949 CEP164Q9UPV0 1460 aa24.15■■□□□ 1.46
SNX29-207ENST00000568949 FANCD2Q9BXW9 1451 aa24.09■■□□□ 1.45
SNX29-207ENST00000568949 CFTRP13569 1480 aa24.04■■□□□ 1.44
SNX29-207ENST00000568949 OSCARQ8IYS5 282 aa24.03■■□□□ 1.44
SNX29-207ENST00000568949 URB2Q14146 1524 aaKnown RBP23.91■■□□□ 1.42
SNX29-207ENST00000568949 TOP2AP11388 1531 aaKnown RBP23.88■■□□□ 1.41
SNX29-207ENST00000568949 RSF1Q96T23 1441 aaPredicted RBP23.87■■□□□ 1.41
SNX29-207ENST00000568949 PRDM2Q13029 1718 aa23.76■■□□□ 1.39
SNX29-207ENST00000568949 RIMBP3CA6NJZ7 1639 aa23.72■■□□□ 1.39
SNX29-207ENST00000568949 RIMBP3BA6NNM3 1639 aa23.72■■□□□ 1.39
SNX29-207ENST00000568949 RIMBP3Q9UFD9 1639 aa23.72■■□□□ 1.39
SNX29-207ENST00000568949 IFT140Q96RY7 1462 aa23.71■■□□□ 1.39
SNX29-207ENST00000568949 ZNF608Q9ULD9 1512 aaPredicted RBP23.67■■□□□ 1.38
SNX29-207ENST00000568949 ARHGEF11O15085 1522 aa23.62■■□□□ 1.37
SNX29-207ENST00000568949 CCDC88BA6NC98 1476 aa23.61■■□□□ 1.37
SNX29-207ENST00000568949 TOPBP1Q92547 1522 aa23.6■■□□□ 1.37
SNX29-207ENST00000568949 ABCC8Q09428 1581 aa23.57■■□□□ 1.36
SNX29-207ENST00000568949 EIF4G3O43432 1585 aaKnown RBP23.52■■□□□ 1.36
SNX29-207ENST00000568949 DNMBPQ6XZF7 1577 aa23.48■■□□□ 1.35
SNX29-207ENST00000568949 CYB5RLQ6IPT4 315 aa23.46■■□□□ 1.35
SNX29-207ENST00000568949 CHD1O14646 1710 aa23.42■■□□□ 1.34
SNX29-207ENST00000568949 TARBP1Q13395 1621 aaKnown RBP23.41■■□□□ 1.34
SNX29-207ENST00000568949 AQRO60306 1485 aaKnown RBP eCLIP23.41■■□□□ 1.34
SNX29-207ENST00000568949 ARAP1Q96P48 1450 aa23.36■■□□□ 1.33
SNX29-207ENST00000568949 POLA1P09884 1462 aaPredicted RBP23.33■■□□□ 1.33
SNX29-207ENST00000568949 FBLN2P98095 1184 aa23.32■■□□□ 1.32
SNX29-207ENST00000568949 TRHP20396 242 aaPredicted RBP23.3■■□□□ 1.32
SNX29-207ENST00000568949 SOGA1O94964 1423 aa23.23■■□□□ 1.31
SNX29-207ENST00000568949 RAD54L2Q9Y4B4 1467 aa23.23■■□□□ 1.31
SNX29-207ENST00000568949 TDRD9Q8NDG6 1382 aaKnown RBP23.21■■□□□ 1.31
SNX29-207ENST00000568949 WDR97A6NE52 1622 aa23.2■■□□□ 1.3
SNX29-207ENST00000568949 SNAPC4Q5SXM2 1469 aa23.17■■□□□ 1.3
SNX29-207ENST00000568949 CLASP1Q7Z460 1538 aa23.16■■□□□ 1.3
SNX29-207ENST00000568949 FGD5Q6ZNL6 1462 aa23.12■■□□□ 1.29
SNX29-207ENST00000568949 MAGI1Q96QZ7 1491 aaPredicted RBP23.12■■□□□ 1.29
SNX29-207ENST00000568949 SYNJ1O43426 1573 aa23.12■■□□□ 1.29
SNX29-207ENST00000568949 CHMP7Q8WUX9 453 aaPredicted RBP23.12■■□□□ 1.29
SNX29-207ENST00000568949 GRIN2BQ13224 1484 aa23.08■■□□□ 1.29
SNX29-207ENST00000568949 CUX1P39880 1505 aa23.04■■□□□ 1.28
SNX29-207ENST00000568949 SYNJ2O15056 1496 aa23.04■■□□□ 1.28
SNX29-207ENST00000568949 GAPVD1Q14C86 1478 aa22.93■■□□□ 1.26
SNX29-207ENST00000568949 PBRM1Q86U86 1689 aa22.93■■□□□ 1.26
SNX29-207ENST00000568949 AEBP2Q6ZN18 517 aaPredicted RBP22.92■■□□□ 1.26
SNX29-207ENST00000568949 ABCA10Q8WWZ4 1543 aa22.87■■□□□ 1.25
SNX29-207ENST00000568949 ABCA5Q8WWZ7 1642 aa22.86■■□□□ 1.25
SNX29-207ENST00000568949 GRIN2AQ12879 1464 aa22.77■■□□□ 1.24
SNX29-207ENST00000568949 ERCC6L2Q5T890 1561 aa22.74■■□□□ 1.23
SNX29-207ENST00000568949 NUP160Q12769 1436 aa22.73■■□□□ 1.23
SNX29-207ENST00000568949 WRNQ14191 1432 aaPredicted RBP eCLIP22.7■■□□□ 1.22
SNX29-207ENST00000568949 ADAMTS12P58397 1594 aa22.7■■□□□ 1.22
SNX29-207ENST00000568949 CEP170Q5SW79 1584 aa22.7■■□□□ 1.22
SNX29-207ENST00000568949 SHROOM2Q13796 1616 aa22.66■■□□□ 1.22
SNX29-207ENST00000568949 FHAD1B1AJZ9 1412 aa22.65■■□□□ 1.22
SNX29-207ENST00000568949 TOP2BQ02880 1626 aa22.59■■□□□ 1.21
SNX29-207ENST00000568949 BIVM-ERCC5R4GMW8 1640 aa22.59■■□□□ 1.21
SNX29-207ENST00000568949 ERICH3Q5RHP9 1530 aa22.57■■□□□ 1.2
SNX29-207ENST00000568949 KIF13AQ9H1H9 1805 aa22.54■■□□□ 1.2
SNX29-207ENST00000568949 PRG4Q92954 1404 aaPredicted RBP22.51■■□□□ 1.19
SNX29-207ENST00000568949 SUPT5HO00267 1087 aaKnown RBP22.49■■□□□ 1.19
SNX29-207ENST00000568949 JPH4Q96JJ6 628 aa22.49■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms