RNA–Protein interactions for RNA: ENST00000568796.1

PKD1-236, Transcript of polycystin 1, transient receptor potential channel interacting, humanhuman

TSL 3

Gene PKD1, Length 447 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKD1-236ENST00000568796 NISCHQ9Y2I1 1504 aa38.6■■■■□ 3.77
PKD1-236ENST00000568796 ABCC9O60706 1549 aa34.97■■■■□ 3.19
PKD1-236ENST00000568796 CCDC180Q9P1Z9 1646 aa34.65■■■■□ 3.14
PKD1-236ENST00000568796 RB1CC1Q8TDY2 1594 aa33.13■■■□□ 2.89
PKD1-236ENST00000568796 DNAJC5BQ9UF47 199 aa32.95■■■□□ 2.87
PKD1-236ENST00000568796 DCAF8L2P0C7V8 631 aa32.89■■■□□ 2.86
PKD1-236ENST00000568796 NACADO15069 1562 aa32.85■■■□□ 2.85
PKD1-236ENST00000568796 PABPN1Q86U42 306 aaKnown RBP eCLIP32.59■■■□□ 2.81
PKD1-236ENST00000568796 UNC13AQ9UPW8 1703 aa32.31■■■□□ 2.76
PKD1-236ENST00000568796 MYO15BQ96JP2 1530 aa32.27■■■□□ 2.76
PKD1-236ENST00000568796 BICRAQ9NZM4 1560 aa32.14■■■□□ 2.74
PKD1-236ENST00000568796 ZCCHC6Q5VYS8 1495 aaKnown RBP31.93■■■□□ 2.7
PKD1-236ENST00000568796 DCAF1Q9Y4B6 1507 aa31.81■■■□□ 2.68
PKD1-236ENST00000568796 SCRIBQ14160 1630 aa31.67■■■□□ 2.66
PKD1-236ENST00000568796 SHROOM4Q9ULL8 1493 aa31.65■■■□□ 2.66
PKD1-236ENST00000568796 CC2D2AQ9P2K1 1620 aa31.52■■■□□ 2.64
PKD1-236ENST00000568796 CECR2Q9BXF3 1484 aa31.51■■■□□ 2.63
PKD1-236ENST00000568796 EIF4G1Q04637 1599 aaKnown RBP31.4■■■□□ 2.62
PKD1-236ENST00000568796 DNAJC5Q9H3Z4 198 aa30.39■■■□□ 2.46
PKD1-236ENST00000568796 NCAPD3P42695 1498 aa30.34■■■□□ 2.45
PKD1-236ENST00000568796 ATAD2BQ9ULI0 1458 aa30.25■■■□□ 2.43
PKD1-236ENST00000568796 ERCC6Q03468 1493 aa30.24■■■□□ 2.43
PKD1-236ENST00000568796 CUX2O14529 1486 aa30.15■■■□□ 2.42
PKD1-236ENST00000568796 SMARCA2P51531 1590 aa30.14■■■□□ 2.42
PKD1-236ENST00000568796 SMARCA4P51532 1647 aa30.14■■■□□ 2.41
PKD1-236ENST00000568796 HMGXB3Q12766 1538 aa30.07■■■□□ 2.4
PKD1-236ENST00000568796 BAZ1AQ9NRL2 1556 aaPredicted RBP29.98■■■□□ 2.39
PKD1-236ENST00000568796 BAZ1BQ9UIG0 1483 aaKnown RBP29.97■■■□□ 2.39
PKD1-236ENST00000568796 NESP48681 1621 aa29.96■■■□□ 2.39
PKD1-236ENST00000568796 PEG3Q9GZU2 1588 aa29.79■■■□□ 2.36
PKD1-236ENST00000568796 MROH2BQ7Z745 1585 aa29.76■■■□□ 2.35
PKD1-236ENST00000568796 LAMC3Q9Y6N6 1575 aa29.67■■■□□ 2.34
PKD1-236ENST00000568796 THOC2Q8NI27 1593 aaKnown RBP29.62■■■□□ 2.33
PKD1-236ENST00000568796 PDS5BQ9NTI5 1447 aa29.58■■■□□ 2.33
PKD1-236ENST00000568796 KIF21AQ7Z4S6 1674 aa29.52■■■□□ 2.32
PKD1-236ENST00000568796 CADPSQ9ULU8 1353 aa29.45■■■□□ 2.31
PKD1-236ENST00000568796 WIZO95785 1651 aa29.39■■■□□ 2.3
PKD1-236ENST00000568796 MRC2Q9UBG0 1479 aa29.3■■■□□ 2.28
PKD1-236ENST00000568796 WDR62O43379 1518 aa29.2■■■□□ 2.26
PKD1-236ENST00000568796 CEP164Q9UPV0 1460 aa29.17■■■□□ 2.26
PKD1-236ENST00000568796 FANCD2Q9BXW9 1451 aa29.12■■■□□ 2.25
PKD1-236ENST00000568796 TRIM41Q8WV44 630 aa29.1■■■□□ 2.25
PKD1-236ENST00000568796 RSF1Q96T23 1441 aaPredicted RBP29.09■■■□□ 2.25
PKD1-236ENST00000568796 CFTRP13569 1480 aa29.04■■■□□ 2.24
PKD1-236ENST00000568796 TOP2AP11388 1531 aaKnown RBP28.99■■■□□ 2.23
PKD1-236ENST00000568796 URB2Q14146 1524 aaKnown RBP28.86■■■□□ 2.21
PKD1-236ENST00000568796 OSCARQ8IYS5 282 aa28.83■■■□□ 2.21
PKD1-236ENST00000568796 CCDC88BA6NC98 1476 aa28.71■■■□□ 2.19
PKD1-236ENST00000568796 PRDM2Q13029 1718 aa28.66■■■□□ 2.18
PKD1-236ENST00000568796 IFT140Q96RY7 1462 aa28.58■■■□□ 2.17
PKD1-236ENST00000568796 ZNF608Q9ULD9 1512 aaPredicted RBP28.56■■■□□ 2.16
PKD1-236ENST00000568796 TOPBP1Q92547 1522 aa28.53■■■□□ 2.16
PKD1-236ENST00000568796 ABCC8Q09428 1581 aa28.45■■■□□ 2.14
PKD1-236ENST00000568796 RIMBP3CA6NJZ7 1639 aa28.4■■■□□ 2.14
PKD1-236ENST00000568796 RIMBP3BA6NNM3 1639 aa28.4■■■□□ 2.14
PKD1-236ENST00000568796 RIMBP3Q9UFD9 1639 aa28.4■■■□□ 2.14
PKD1-236ENST00000568796 DNMBPQ6XZF7 1577 aa28.39■■■□□ 2.14
PKD1-236ENST00000568796 EIF4G3O43432 1585 aaKnown RBP28.36■■■□□ 2.13
PKD1-236ENST00000568796 AQRO60306 1485 aaKnown RBP eCLIP28.31■■■□□ 2.121e-8■■■■□ 21.8
PKD1-236ENST00000568796 ARHGEF11O15085 1522 aa28.3■■■□□ 2.12
PKD1-236ENST00000568796 FBLN2P98095 1184 aa28.27■■■□□ 2.12
PKD1-236ENST00000568796 TARBP1Q13395 1621 aaKnown RBP28.24■■■□□ 2.11
PKD1-236ENST00000568796 POLA1P09884 1462 aaPredicted RBP28.23■■■□□ 2.11
PKD1-236ENST00000568796 CYB5RLQ6IPT4 315 aa28.22■■■□□ 2.11
PKD1-236ENST00000568796 CHD1O14646 1710 aa28.18■■■□□ 2.1
PKD1-236ENST00000568796 RAD54L2Q9Y4B4 1467 aa28.17■■■□□ 2.1
PKD1-236ENST00000568796 SOGA1O94964 1423 aa28.15■■■□□ 2.1
PKD1-236ENST00000568796 TDRD9Q8NDG6 1382 aaKnown RBP28.13■■■□□ 2.09
PKD1-236ENST00000568796 FGD5Q6ZNL6 1462 aa28.04■■■□□ 2.08
PKD1-236ENST00000568796 ARAP1Q96P48 1450 aa28.02■■■□□ 2.08
PKD1-236ENST00000568796 TRHP20396 242 aaPredicted RBP28.01■■■□□ 2.07
PKD1-236ENST00000568796 SNAPC4Q5SXM2 1469 aa28.01■■■□□ 2.07
PKD1-236ENST00000568796 CHMP7Q8WUX9 453 aaPredicted RBP27.99■■■□□ 2.07
PKD1-236ENST00000568796 CUX1P39880 1505 aa27.97■■■□□ 2.07
PKD1-236ENST00000568796 WDR97A6NE52 1622 aa27.92■■■□□ 2.06
PKD1-236ENST00000568796 GRIN2BQ13224 1484 aa27.89■■■□□ 2.06
PKD1-236ENST00000568796 MAGI1Q96QZ7 1491 aaPredicted RBP27.89■■■□□ 2.05
PKD1-236ENST00000568796 SYNJ1O43426 1573 aa27.85■■■□□ 2.05
PKD1-236ENST00000568796 CLASP1Q7Z460 1538 aa27.83■■■□□ 2.05
PKD1-236ENST00000568796 SUPT5HO00267 1087 aaKnown RBP27.83■■■□□ 2.05
PKD1-236ENST00000568796 SYNJ2O15056 1496 aa27.81■■■□□ 2.04
PKD1-236ENST00000568796 GAPVD1Q14C86 1478 aa27.78■■■□□ 2.04
PKD1-236ENST00000568796 PBRM1Q86U86 1689 aa27.72■■■□□ 2.03
PKD1-236ENST00000568796 ABCA10Q8WWZ4 1543 aa27.68■■■□□ 2.02
PKD1-236ENST00000568796 ABCA5Q8WWZ7 1642 aa27.63■■■□□ 2.01
PKD1-236ENST00000568796 WRNQ14191 1432 aaPredicted RBP eCLIP27.58■■■□□ 2.01
PKD1-236ENST00000568796 GRIN2AQ12879 1464 aa27.52■■■□□ 2
PKD1-236ENST00000568796 ADAMTS12P58397 1594 aa27.46■■□□□ 1.99
PKD1-236ENST00000568796 TOP2BQ02880 1626 aa27.45■■□□□ 1.98
PKD1-236ENST00000568796 ERCC6L2Q5T890 1561 aa27.43■■□□□ 1.98
PKD1-236ENST00000568796 BIVM-ERCC5R4GMW8 1640 aa27.42■■□□□ 1.98
PKD1-236ENST00000568796 NUP160Q12769 1436 aa27.41■■□□□ 1.98
PKD1-236ENST00000568796 CEP170Q5SW79 1584 aa27.41■■□□□ 1.98
PKD1-236ENST00000568796 FHAD1B1AJZ9 1412 aa27.41■■□□□ 1.98
PKD1-236ENST00000568796 AEBP2Q6ZN18 517 aaPredicted RBP27.33■■□□□ 1.97
PKD1-236ENST00000568796 ERICH3Q5RHP9 1530 aa27.32■■□□□ 1.96
PKD1-236ENST00000568796 SHROOM2Q13796 1616 aa27.27■■□□□ 1.96
PKD1-236ENST00000568796 PRG4Q92954 1404 aaPredicted RBP27.23■■□□□ 1.95
PKD1-236ENST00000568796 JPH4Q96JJ6 628 aa27.22■■□□□ 1.95
PKD1-236ENST00000568796 NPM1P06748 294 aaKnown RBP eCLIP27.07■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms