RNA–Protein interactions for RNA: ENST00000568301.1

COMMD4-223, Transcript of COMM domain containing 4, humanhuman

TSL 5

Gene COMMD4, Length 666 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-223ENST00000568301 NISCHQ9Y2I1 1504 aa37.82■■■■□ 3.64
COMMD4-223ENST00000568301 ABCC9O60706 1549 aa34.39■■■■□ 3.1
COMMD4-223ENST00000568301 CCDC180Q9P1Z9 1646 aa34.02■■■■□ 3.04
COMMD4-223ENST00000568301 DNAJC5BQ9UF47 199 aa32.59■■■□□ 2.81
COMMD4-223ENST00000568301 RB1CC1Q8TDY2 1594 aa32.54■■■□□ 2.8
COMMD4-223ENST00000568301 NACADO15069 1562 aa32.25■■■□□ 2.75
COMMD4-223ENST00000568301 DCAF8L2P0C7V8 631 aa32.12■■■□□ 2.73
COMMD4-223ENST00000568301 PABPN1Q86U42 306 aaKnown RBP eCLIP32.01■■■□□ 2.71
COMMD4-223ENST00000568301 UNC13AQ9UPW8 1703 aa31.86■■■□□ 2.69
COMMD4-223ENST00000568301 MYO15BQ96JP2 1530 aa31.69■■■□□ 2.66
COMMD4-223ENST00000568301 BICRAQ9NZM4 1560 aa31.66■■■□□ 2.66
COMMD4-223ENST00000568301 ZCCHC6Q5VYS8 1495 aaKnown RBP31.27■■■□□ 2.6
COMMD4-223ENST00000568301 DCAF1Q9Y4B6 1507 aa31.24■■■□□ 2.59
COMMD4-223ENST00000568301 SHROOM4Q9ULL8 1493 aa31.1■■■□□ 2.57
COMMD4-223ENST00000568301 CC2D2AQ9P2K1 1620 aa31.04■■■□□ 2.56
COMMD4-223ENST00000568301 SCRIBQ14160 1630 aa31.03■■■□□ 2.56
COMMD4-223ENST00000568301 CECR2Q9BXF3 1484 aa30.99■■■□□ 2.55
COMMD4-223ENST00000568301 EIF4G1Q04637 1599 aaKnown RBP30.88■■■□□ 2.53
COMMD4-223ENST00000568301 DNAJC5Q9H3Z4 198 aa30.1■■■□□ 2.41
COMMD4-223ENST00000568301 NCAPD3P42695 1498 aa29.8■■■□□ 2.36
COMMD4-223ENST00000568301 CUX2O14529 1486 aa29.71■■■□□ 2.35
COMMD4-223ENST00000568301 ERCC6Q03468 1493 aa29.68■■■□□ 2.34
COMMD4-223ENST00000568301 ATAD2BQ9ULI0 1458 aa29.68■■■□□ 2.34
COMMD4-223ENST00000568301 SMARCA4P51532 1647 aa29.56■■■□□ 2.32
COMMD4-223ENST00000568301 SMARCA2P51531 1590 aa29.54■■■□□ 2.32
COMMD4-223ENST00000568301 HMGXB3Q12766 1538 aa29.52■■■□□ 2.32
COMMD4-223ENST00000568301 NESP48681 1621 aa29.48■■■□□ 2.31
COMMD4-223ENST00000568301 BAZ1BQ9UIG0 1483 aaKnown RBP29.36■■■□□ 2.29
COMMD4-223ENST00000568301 BAZ1AQ9NRL2 1556 aaPredicted RBP29.35■■■□□ 2.29
COMMD4-223ENST00000568301 PEG3Q9GZU2 1588 aa29.26■■■□□ 2.27
COMMD4-223ENST00000568301 THOC2Q8NI27 1593 aaKnown RBP29.19■■■□□ 2.26
COMMD4-223ENST00000568301 MROH2BQ7Z745 1585 aa29.16■■■□□ 2.26
COMMD4-223ENST00000568301 LAMC3Q9Y6N6 1575 aa29.16■■■□□ 2.26
COMMD4-223ENST00000568301 KIF21AQ7Z4S6 1674 aa29.05■■■□□ 2.24
COMMD4-223ENST00000568301 PDS5BQ9NTI5 1447 aa29.02■■■□□ 2.24
COMMD4-223ENST00000568301 CADPSQ9ULU8 1353 aa28.89■■■□□ 2.22
COMMD4-223ENST00000568301 WIZO95785 1651 aa28.8■■■□□ 2.2
COMMD4-223ENST00000568301 MRC2Q9UBG0 1479 aa28.78■■■□□ 2.2
COMMD4-223ENST00000568301 WDR62O43379 1518 aa28.71■■■□□ 2.19
COMMD4-223ENST00000568301 TRIM41Q8WV44 630 aa28.67■■■□□ 2.18
COMMD4-223ENST00000568301 CEP164Q9UPV0 1460 aa28.6■■■□□ 2.17
COMMD4-223ENST00000568301 FANCD2Q9BXW9 1451 aa28.56■■■□□ 2.16
COMMD4-223ENST00000568301 CFTRP13569 1480 aa28.49■■■□□ 2.15
COMMD4-223ENST00000568301 RSF1Q96T23 1441 aaPredicted RBP28.48■■■□□ 2.15
COMMD4-223ENST00000568301 TOP2AP11388 1531 aaKnown RBP28.37■■■□□ 2.13
COMMD4-223ENST00000568301 URB2Q14146 1524 aaKnown RBP28.36■■■□□ 2.13
COMMD4-223ENST00000568301 OSCARQ8IYS5 282 aa28.35■■■□□ 2.13
COMMD4-223ENST00000568301 PRDM2Q13029 1718 aa28.15■■■□□ 2.1
COMMD4-223ENST00000568301 CCDC88BA6NC98 1476 aa28.09■■■□□ 2.09
COMMD4-223ENST00000568301 ZNF608Q9ULD9 1512 aaPredicted RBP28.08■■■□□ 2.08
COMMD4-223ENST00000568301 IFT140Q96RY7 1462 aa28.03■■■□□ 2.08
COMMD4-223ENST00000568301 RIMBP3CA6NJZ7 1639 aa28.01■■■□□ 2.07
COMMD4-223ENST00000568301 RIMBP3BA6NNM3 1639 aa28.01■■■□□ 2.07
COMMD4-223ENST00000568301 RIMBP3Q9UFD9 1639 aa28.01■■■□□ 2.07
COMMD4-223ENST00000568301 TOPBP1Q92547 1522 aa27.98■■■□□ 2.07
COMMD4-223ENST00000568301 ARHGEF11O15085 1522 aa27.88■■■□□ 2.05
COMMD4-223ENST00000568301 EIF4G3O43432 1585 aaKnown RBP27.86■■■□□ 2.05
COMMD4-223ENST00000568301 ABCC8Q09428 1581 aa27.86■■■□□ 2.05
COMMD4-223ENST00000568301 DNMBPQ6XZF7 1577 aa27.84■■■□□ 2.05
COMMD4-223ENST00000568301 AQRO60306 1485 aaKnown RBP eCLIP27.79■■■□□ 2.04
COMMD4-223ENST00000568301 TARBP1Q13395 1621 aaKnown RBP27.76■■■□□ 2.03
COMMD4-223ENST00000568301 CYB5RLQ6IPT4 315 aa27.74■■■□□ 2.03
COMMD4-223ENST00000568301 CHD1O14646 1710 aa27.72■■■□□ 2.03
COMMD4-223ENST00000568301 POLA1P09884 1462 aaPredicted RBP27.69■■■□□ 2.02
COMMD4-223ENST00000568301 FBLN2P98095 1184 aa27.67■■■□□ 2.02
COMMD4-223ENST00000568301 RAD54L2Q9Y4B4 1467 aa27.62■■■□□ 2.01
COMMD4-223ENST00000568301 ARAP1Q96P48 1450 aa27.6■■■□□ 2.01
COMMD4-223ENST00000568301 TDRD9Q8NDG6 1382 aaKnown RBP27.57■■■□□ 2
COMMD4-223ENST00000568301 SOGA1O94964 1423 aa27.57■■■□□ 2
COMMD4-223ENST00000568301 TRHP20396 242 aaPredicted RBP27.51■■□□□ 1.99
COMMD4-223ENST00000568301 SNAPC4Q5SXM2 1469 aa27.47■■□□□ 1.99
COMMD4-223ENST00000568301 FGD5Q6ZNL6 1462 aa27.46■■□□□ 1.99
COMMD4-223ENST00000568301 CUX1P39880 1505 aa27.41■■□□□ 1.98
COMMD4-223ENST00000568301 CHMP7Q8WUX9 453 aaPredicted RBP27.4■■□□□ 1.98
COMMD4-223ENST00000568301 WDR97A6NE52 1622 aa27.4■■□□□ 1.98
COMMD4-223ENST00000568301 CLASP1Q7Z460 1538 aa27.4■■□□□ 1.98
COMMD4-223ENST00000568301 MAGI1Q96QZ7 1491 aaPredicted RBP27.35■■□□□ 1.97
COMMD4-223ENST00000568301 GRIN2BQ13224 1484 aa27.33■■□□□ 1.97
COMMD4-223ENST00000568301 SYNJ1O43426 1573 aa27.33■■□□□ 1.97
COMMD4-223ENST00000568301 SYNJ2O15056 1496 aa27.28■■□□□ 1.96
COMMD4-223ENST00000568301 PBRM1Q86U86 1689 aa27.21■■□□□ 1.95
COMMD4-223ENST00000568301 GAPVD1Q14C86 1478 aa27.21■■□□□ 1.95
COMMD4-223ENST00000568301 SUPT5HO00267 1087 aaKnown RBP27.16■■□□□ 1.94
COMMD4-223ENST00000568301 ABCA10Q8WWZ4 1543 aa27.12■■□□□ 1.93
COMMD4-223ENST00000568301 ABCA5Q8WWZ7 1642 aa27.11■■□□□ 1.93
COMMD4-223ENST00000568301 ERCC6L2Q5T890 1561 aa26.99■■□□□ 1.91
COMMD4-223ENST00000568301 GRIN2AQ12879 1464 aa26.99■■□□□ 1.91
COMMD4-223ENST00000568301 WRNQ14191 1432 aaPredicted RBP eCLIP26.96■■□□□ 1.91
COMMD4-223ENST00000568301 ADAMTS12P58397 1594 aa26.92■■□□□ 1.9
COMMD4-223ENST00000568301 CEP170Q5SW79 1584 aa26.92■■□□□ 1.9
COMMD4-223ENST00000568301 AEBP2Q6ZN18 517 aaPredicted RBP26.91■■□□□ 1.9
COMMD4-223ENST00000568301 NUP160Q12769 1436 aa26.9■■□□□ 1.9
COMMD4-223ENST00000568301 TOP2BQ02880 1626 aa26.89■■□□□ 1.9
COMMD4-223ENST00000568301 BIVM-ERCC5R4GMW8 1640 aa26.88■■□□□ 1.89
COMMD4-223ENST00000568301 FHAD1B1AJZ9 1412 aa26.84■■□□□ 1.89
COMMD4-223ENST00000568301 SHROOM2Q13796 1616 aa26.82■■□□□ 1.88
COMMD4-223ENST00000568301 ERICH3Q5RHP9 1530 aa26.77■■□□□ 1.88
COMMD4-223ENST00000568301 PRG4Q92954 1404 aaPredicted RBP26.69■■□□□ 1.86
COMMD4-223ENST00000568301 JPH4Q96JJ6 628 aa26.68■■□□□ 1.86
COMMD4-223ENST00000568301 KIF13AQ9H1H9 1805 aa26.65■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 183.5 ms