RNA–Protein interactions for RNA: ENST00000568129.1

HDGFL3-205, Transcript of HDGF like 3, humanhuman

TSL 2

Gene HDGFL3, Length 426 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-205ENST00000568129 NISCHQ9Y2I1 1504 aa20.24■□□□□ 0.83
HDGFL3-205ENST00000568129 CCDC180Q9P1Z9 1646 aa18.08■□□□□ 0.48
HDGFL3-205ENST00000568129 ABCC9O60706 1549 aa17.62■□□□□ 0.41
HDGFL3-205ENST00000568129 NACADO15069 1562 aa17■□□□□ 0.31
HDGFL3-205ENST00000568129 RB1CC1Q8TDY2 1594 aa17■□□□□ 0.31
HDGFL3-205ENST00000568129 MYO15BQ96JP2 1530 aa16.94■□□□□ 0.3
HDGFL3-205ENST00000568129 ZCCHC6Q5VYS8 1495 aaKnown RBP16.84■□□□□ 0.29
HDGFL3-205ENST00000568129 DCAF1Q9Y4B6 1507 aa16.82■□□□□ 0.28
HDGFL3-205ENST00000568129 DCAF8L2P0C7V8 631 aa16.75■□□□□ 0.27
HDGFL3-205ENST00000568129 UNC13AQ9UPW8 1703 aa16.7■□□□□ 0.26
HDGFL3-205ENST00000568129 BICRAQ9NZM4 1560 aa16.54■□□□□ 0.24
HDGFL3-205ENST00000568129 PABPN1Q86U42 306 aaKnown RBP eCLIP16.44■□□□□ 0.22
HDGFL3-205ENST00000568129 SHROOM4Q9ULL8 1493 aa16.37■□□□□ 0.21
HDGFL3-205ENST00000568129 SCRIBQ14160 1630 aa16.35■□□□□ 0.21
HDGFL3-205ENST00000568129 DNAJC5BQ9UF47 199 aa16.33■□□□□ 0.2
HDGFL3-205ENST00000568129 EIF4G1Q04637 1599 aaKnown RBP16.06■□□□□ 0.16
HDGFL3-205ENST00000568129 CC2D2AQ9P2K1 1620 aa16.01■□□□□ 0.15
HDGFL3-205ENST00000568129 CECR2Q9BXF3 1484 aa15.88■□□□□ 0.13
HDGFL3-205ENST00000568129 SMARCA4P51532 1647 aa15.72■□□□□ 0.11
HDGFL3-205ENST00000568129 NCAPD3P42695 1498 aa15.7■□□□□ 0.1
HDGFL3-205ENST00000568129 BAZ1AQ9NRL2 1556 aaPredicted RBP15.68■□□□□ 0.1
HDGFL3-205ENST00000568129 ATAD2BQ9ULI0 1458 aa15.65■□□□□ 0.1
HDGFL3-205ENST00000568129 PEG3Q9GZU2 1588 aa15.63■□□□□ 0.09
HDGFL3-205ENST00000568129 SMARCA2P51531 1590 aa15.62■□□□□ 0.09
HDGFL3-205ENST00000568129 HMGXB3Q12766 1538 aa15.59■□□□□ 0.09
HDGFL3-205ENST00000568129 MROH2BQ7Z745 1585 aa15.57■□□□□ 0.08
HDGFL3-205ENST00000568129 BAZ1BQ9UIG0 1483 aaKnown RBP15.46■□□□□ 0.07
HDGFL3-205ENST00000568129 WIZO95785 1651 aa15.4■□□□□ 0.06
HDGFL3-205ENST00000568129 RSF1Q96T23 1441 aaPredicted RBP15.37■□□□□ 0.05
HDGFL3-205ENST00000568129 LAMC3Q9Y6N6 1575 aa15.28■□□□□ 0.04
HDGFL3-205ENST00000568129 NESP48681 1621 aa15.25■□□□□ 0.03
HDGFL3-205ENST00000568129 TOP2AP11388 1531 aaKnown RBP15.22■□□□□ 0.03
HDGFL3-205ENST00000568129 CADPSQ9ULU8 1353 aa15.19■□□□□ 0.02
HDGFL3-205ENST00000568129 ERCC6Q03468 1493 aa15.17■□□□□ 0.02
HDGFL3-205ENST00000568129 CUX2O14529 1486 aa15.15■□□□□ 0.02
HDGFL3-205ENST00000568129 PDS5BQ9NTI5 1447 aa15.13■□□□□ 0.01
HDGFL3-205ENST00000568129 KIF21AQ7Z4S6 1674 aa15.12■□□□□ 0.01
HDGFL3-205ENST00000568129 CFTRP13569 1480 aa15.1■□□□□ 0.01
HDGFL3-205ENST00000568129 THOC2Q8NI27 1593 aaKnown RBP15.1■□□□□ 0.01
HDGFL3-205ENST00000568129 CCDC88BA6NC98 1476 aa15.05■□□□□ -0
HDGFL3-205ENST00000568129 PRDM2Q13029 1718 aa15.04■□□□□ -0
HDGFL3-205ENST00000568129 FANCD2Q9BXW9 1451 aa14.98□□□□□ -0.01
HDGFL3-205ENST00000568129 MRC2Q9UBG0 1479 aa14.97□□□□□ -0.01
HDGFL3-205ENST00000568129 WDR62O43379 1518 aa14.97□□□□□ -0.01
HDGFL3-205ENST00000568129 CEP164Q9UPV0 1460 aa14.95□□□□□ -0.02
HDGFL3-205ENST00000568129 URB2Q14146 1524 aaKnown RBP14.86□□□□□ -0.03
HDGFL3-205ENST00000568129 DNAJC5Q9H3Z4 198 aa14.8□□□□□ -0.04
HDGFL3-205ENST00000568129 ABCC8Q09428 1581 aa14.78□□□□□ -0.04
HDGFL3-205ENST00000568129 SUPT5HO00267 1087 aaKnown RBP14.76□□□□□ -0.05
HDGFL3-205ENST00000568129 TOPBP1Q92547 1522 aa14.75□□□□□ -0.05
HDGFL3-205ENST00000568129 DNMBPQ6XZF7 1577 aa14.73□□□□□ -0.05
HDGFL3-205ENST00000568129 IFT140Q96RY7 1462 aa14.68□□□□□ -0.06
HDGFL3-205ENST00000568129 TARBP1Q13395 1621 aaKnown RBP14.64□□□□□ -0.07
HDGFL3-205ENST00000568129 CUX1P39880 1505 aa14.61□□□□□ -0.07
HDGFL3-205ENST00000568129 POLA1P09884 1462 aaPredicted RBP14.61□□□□□ -0.07
HDGFL3-205ENST00000568129 ZNF608Q9ULD9 1512 aaPredicted RBP14.6□□□□□ -0.07
HDGFL3-205ENST00000568129 WDR97A6NE52 1622 aa14.55□□□□□ -0.08
HDGFL3-205ENST00000568129 SOGA1O94964 1423 aa14.54□□□□□ -0.08
HDGFL3-205ENST00000568129 FGD5Q6ZNL6 1462 aa14.54□□□□□ -0.08
HDGFL3-205ENST00000568129 EIF4G3O43432 1585 aaKnown RBP14.54□□□□□ -0.08
HDGFL3-205ENST00000568129 RAD54L2Q9Y4B4 1467 aa14.52□□□□□ -0.08
HDGFL3-205ENST00000568129 BIVM-ERCC5R4GMW8 1640 aa14.5□□□□□ -0.09
HDGFL3-205ENST00000568129 AQRO60306 1485 aaKnown RBP eCLIP14.5□□□□□ -0.09
HDGFL3-205ENST00000568129 TOP2BQ02880 1626 aa14.48□□□□□ -0.09
HDGFL3-205ENST00000568129 OSCARQ8IYS5 282 aa14.48□□□□□ -0.09
HDGFL3-205ENST00000568129 WRNQ14191 1432 aaPredicted RBP eCLIP14.46□□□□□ -0.09
HDGFL3-205ENST00000568129 ABCA10Q8WWZ4 1543 aa14.46□□□□□ -0.1
HDGFL3-205ENST00000568129 SYNJ1O43426 1573 aa14.44□□□□□ -0.1
HDGFL3-205ENST00000568129 TDRD9Q8NDG6 1382 aaKnown RBP14.44□□□□□ -0.1
HDGFL3-205ENST00000568129 CHD1O14646 1710 aa14.41□□□□□ -0.1
HDGFL3-205ENST00000568129 ABCA5Q8WWZ7 1642 aa14.4□□□□□ -0.1
HDGFL3-205ENST00000568129 GRIN2BQ13224 1484 aa14.39□□□□□ -0.11
HDGFL3-205ENST00000568129 MAGI1Q96QZ7 1491 aaPredicted RBP14.38□□□□□ -0.11
HDGFL3-205ENST00000568129 PBRM1Q86U86 1689 aa14.38□□□□□ -0.11
HDGFL3-205ENST00000568129 GAPVD1Q14C86 1478 aa14.38□□□□□ -0.11
HDGFL3-205ENST00000568129 SNAPC4Q5SXM2 1469 aa14.34□□□□□ -0.11
HDGFL3-205ENST00000568129 SYNJ2O15056 1496 aa14.31□□□□□ -0.12
HDGFL3-205ENST00000568129 ERICH3Q5RHP9 1530 aa14.28□□□□□ -0.12
HDGFL3-205ENST00000568129 CLASP1Q7Z460 1538 aa14.27□□□□□ -0.12
HDGFL3-205ENST00000568129 RIMBP3CA6NJZ7 1639 aa14.26□□□□□ -0.13
HDGFL3-205ENST00000568129 RIMBP3BA6NNM3 1639 aa14.26□□□□□ -0.13
HDGFL3-205ENST00000568129 RIMBP3Q9UFD9 1639 aa14.26□□□□□ -0.13
HDGFL3-205ENST00000568129 CHMP7Q8WUX9 453 aaPredicted RBP14.26□□□□□ -0.13
HDGFL3-205ENST00000568129 FBLN2P98095 1184 aa14.24□□□□□ -0.13
HDGFL3-205ENST00000568129 ADAMTS12P58397 1594 aa14.24□□□□□ -0.13
HDGFL3-205ENST00000568129 ARHGEF11O15085 1522 aa14.24□□□□□ -0.13
HDGFL3-205ENST00000568129 FHAD1B1AJZ9 1412 aa14.22□□□□□ -0.13
HDGFL3-205ENST00000568129 GRIN2AQ12879 1464 aa14.2□□□□□ -0.14
HDGFL3-205ENST00000568129 NUP160Q12769 1436 aa14.18□□□□□ -0.14
HDGFL3-205ENST00000568129 KIF27Q86VH2 1401 aa14.16□□□□□ -0.14
HDGFL3-205ENST00000568129 IGF1RP08069 1367 aa14.16□□□□□ -0.14
HDGFL3-205ENST00000568129 CEP170Q5SW79 1584 aa14.14□□□□□ -0.15
HDGFL3-205ENST00000568129 SHROOM2Q13796 1616 aa14.12□□□□□ -0.15
HDGFL3-205ENST00000568129 CUL7Q14999 1698 aa14.12□□□□□ -0.15
HDGFL3-205ENST00000568129 ARAP1Q96P48 1450 aa14.12□□□□□ -0.15
HDGFL3-205ENST00000568129 TRIM41Q8WV44 630 aa14.1□□□□□ -0.15
HDGFL3-205ENST00000568129 CYB5RLQ6IPT4 315 aa14.05□□□□□ -0.16
HDGFL3-205ENST00000568129 CARMIL1Q5VZK9 1371 aa14.04□□□□□ -0.16
HDGFL3-205ENST00000568129 RUSC2Q8N2Y8 1516 aa14.03□□□□□ -0.16
HDGFL3-205ENST00000568129 ERCC6L2Q5T890 1561 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms