RNA–Protein interactions for RNA: ENST00000568034.1

COMMD4-222, Transcript of COMM domain containing 4, humanhuman

TSL 5

Gene COMMD4, Length 1,085 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-222ENST00000568034 NISCHQ9Y2I1 1504 aa43.21■■■■■ 4.51
COMMD4-222ENST00000568034 CCDC180Q9P1Z9 1646 aa38.21■■■■□ 3.71
COMMD4-222ENST00000568034 ABCC9O60706 1549 aa36.96■■■■□ 3.51
COMMD4-222ENST00000568034 ZCCHC6Q5VYS8 1495 aaKnown RBP36.12■■■■□ 3.37
COMMD4-222ENST00000568034 NACADO15069 1562 aa35.81■■■■□ 3.32
COMMD4-222ENST00000568034 DCAF1Q9Y4B6 1507 aa35.78■■■■□ 3.32
COMMD4-222ENST00000568034 MYO15BQ96JP2 1530 aa35.77■■■■□ 3.32
COMMD4-222ENST00000568034 DCAF8L2P0C7V8 631 aa35.76■■■■□ 3.32
COMMD4-222ENST00000568034 RB1CC1Q8TDY2 1594 aa35.72■■■■□ 3.31
COMMD4-222ENST00000568034 UNC13AQ9UPW8 1703 aa34.99■■■■□ 3.19
COMMD4-222ENST00000568034 SCRIBQ14160 1630 aa34.91■■■■□ 3.18
COMMD4-222ENST00000568034 BICRAQ9NZM4 1560 aa34.73■■■■□ 3.15
COMMD4-222ENST00000568034 PABPN1Q86U42 306 aaKnown RBP eCLIP34.59■■■■□ 3.13
COMMD4-222ENST00000568034 SHROOM4Q9ULL8 1493 aa34.33■■■■□ 3.09
COMMD4-222ENST00000568034 EIF4G1Q04637 1599 aaKnown RBP33.73■■■□□ 2.99
COMMD4-222ENST00000568034 CECR2Q9BXF3 1484 aa33.63■■■□□ 2.97
COMMD4-222ENST00000568034 DNAJC5BQ9UF47 199 aa33.61■■■□□ 2.97
COMMD4-222ENST00000568034 CC2D2AQ9P2K1 1620 aa33.47■■■□□ 2.95
COMMD4-222ENST00000568034 SMARCA4P51532 1647 aa33.44■■■□□ 2.94
COMMD4-222ENST00000568034 BAZ1AQ9NRL2 1556 aaPredicted RBP33.43■■■□□ 2.94
COMMD4-222ENST00000568034 MROH2BQ7Z745 1585 aa33.33■■■□□ 2.93
COMMD4-222ENST00000568034 ATAD2BQ9ULI0 1458 aa33.15■■■□□ 2.9
COMMD4-222ENST00000568034 PEG3Q9GZU2 1588 aa33.13■■■□□ 2.89
COMMD4-222ENST00000568034 SMARCA2P51531 1590 aa33.09■■■□□ 2.89
COMMD4-222ENST00000568034 RSF1Q96T23 1441 aaPredicted RBP33.09■■■□□ 2.89
COMMD4-222ENST00000568034 NCAPD3P42695 1498 aa33.05■■■□□ 2.88
COMMD4-222ENST00000568034 WIZO95785 1651 aa32.97■■■□□ 2.87
COMMD4-222ENST00000568034 HMGXB3Q12766 1538 aa32.94■■■□□ 2.86
COMMD4-222ENST00000568034 BAZ1BQ9UIG0 1483 aaKnown RBP32.86■■■□□ 2.85
COMMD4-222ENST00000568034 TOP2AP11388 1531 aaKnown RBP32.66■■■□□ 2.82
COMMD4-222ENST00000568034 SUPT5HO00267 1087 aaKnown RBP32.46■■■□□ 2.79
COMMD4-222ENST00000568034 CCDC88BA6NC98 1476 aa32.25■■■□□ 2.75
COMMD4-222ENST00000568034 NESP48681 1621 aa32.15■■■□□ 2.74
COMMD4-222ENST00000568034 CADPSQ9ULU8 1353 aa32.09■■■□□ 2.73
COMMD4-222ENST00000568034 LAMC3Q9Y6N6 1575 aa32.09■■■□□ 2.73
COMMD4-222ENST00000568034 CFTRP13569 1480 aa32.03■■■□□ 2.72
COMMD4-222ENST00000568034 PDS5BQ9NTI5 1447 aa31.83■■■□□ 2.69
COMMD4-222ENST00000568034 PRDM2Q13029 1718 aa31.8■■■□□ 2.68
COMMD4-222ENST00000568034 ERCC6Q03468 1493 aa31.78■■■□□ 2.68
COMMD4-222ENST00000568034 KIF21AQ7Z4S6 1674 aa31.77■■■□□ 2.68
COMMD4-222ENST00000568034 FANCD2Q9BXW9 1451 aa31.73■■■□□ 2.67
COMMD4-222ENST00000568034 CEP164Q9UPV0 1460 aa31.64■■■□□ 2.66
COMMD4-222ENST00000568034 THOC2Q8NI27 1593 aaKnown RBP31.6■■■□□ 2.65
COMMD4-222ENST00000568034 MRC2Q9UBG0 1479 aa31.52■■■□□ 2.64
COMMD4-222ENST00000568034 WDR62O43379 1518 aa31.44■■■□□ 2.62
COMMD4-222ENST00000568034 URB2Q14146 1524 aaKnown RBP31.43■■■□□ 2.62
COMMD4-222ENST00000568034 CUX2O14529 1486 aa31.33■■■□□ 2.61
COMMD4-222ENST00000568034 TOPBP1Q92547 1522 aa31.29■■■□□ 2.6
COMMD4-222ENST00000568034 DNMBPQ6XZF7 1577 aa31.29■■■□□ 2.6
COMMD4-222ENST00000568034 ABCC8Q09428 1581 aa31.25■■■□□ 2.59
COMMD4-222ENST00000568034 CUX1P39880 1505 aa31.24■■■□□ 2.59
COMMD4-222ENST00000568034 WRNQ14191 1432 aaPredicted RBP eCLIP31.15■■■□□ 2.58
COMMD4-222ENST00000568034 SYNJ1O43426 1573 aa31.1■■■□□ 2.57
COMMD4-222ENST00000568034 BIVM-ERCC5R4GMW8 1640 aa31.07■■■□□ 2.56
COMMD4-222ENST00000568034 POLA1P09884 1462 aaPredicted RBP31.07■■■□□ 2.56
COMMD4-222ENST00000568034 TOP2BQ02880 1626 aa31.06■■■□□ 2.56
COMMD4-222ENST00000568034 FGD5Q6ZNL6 1462 aa31.04■■■□□ 2.56
COMMD4-222ENST00000568034 IFT140Q96RY7 1462 aa30.96■■■□□ 2.55
COMMD4-222ENST00000568034 TARBP1Q13395 1621 aaKnown RBP30.94■■■□□ 2.54
COMMD4-222ENST00000568034 RAD54L2Q9Y4B4 1467 aa30.92■■■□□ 2.54
COMMD4-222ENST00000568034 SOGA1O94964 1423 aa30.89■■■□□ 2.53
COMMD4-222ENST00000568034 ZNF608Q9ULD9 1512 aaPredicted RBP30.83■■■□□ 2.53
COMMD4-222ENST00000568034 WDR97A6NE52 1622 aa30.81■■■□□ 2.52
COMMD4-222ENST00000568034 ABCA10Q8WWZ4 1543 aa30.77■■■□□ 2.52
COMMD4-222ENST00000568034 EIF4G3O43432 1585 aaKnown RBP30.72■■■□□ 2.51
COMMD4-222ENST00000568034 AQRO60306 1485 aaKnown RBP eCLIP30.68■■■□□ 2.5
COMMD4-222ENST00000568034 TDRD9Q8NDG6 1382 aaKnown RBP30.67■■■□□ 2.5
COMMD4-222ENST00000568034 ABCA5Q8WWZ7 1642 aa30.63■■■□□ 2.49
COMMD4-222ENST00000568034 TRIM41Q8WV44 630 aa30.62■■■□□ 2.49
COMMD4-222ENST00000568034 CHIC1Q5VXU3 224 aa30.6■■■□□ 2.49
COMMD4-222ENST00000568034 DNAJC5Q9H3Z4 198 aa30.56■■■□□ 2.48
COMMD4-222ENST00000568034 GAPVD1Q14C86 1478 aa30.56■■■□□ 2.48
COMMD4-222ENST00000568034 GRIN2BQ13224 1484 aa30.5■■■□□ 2.47
COMMD4-222ENST00000568034 PBRM1Q86U86 1689 aa30.49■■■□□ 2.47
COMMD4-222ENST00000568034 KIF27Q86VH2 1401 aa30.44■■■□□ 2.46
COMMD4-222ENST00000568034 SNAPC4Q5SXM2 1469 aa30.42■■■□□ 2.46
COMMD4-222ENST00000568034 ERICH3Q5RHP9 1530 aa30.38■■■□□ 2.45
COMMD4-222ENST00000568034 MAGI1Q96QZ7 1491 aaPredicted RBP30.38■■■□□ 2.45
COMMD4-222ENST00000568034 RUSC2Q8N2Y8 1516 aa30.37■■■□□ 2.45
COMMD4-222ENST00000568034 IGF1RP08069 1367 aa30.3■■■□□ 2.44
COMMD4-222ENST00000568034 ADAMTS12P58397 1594 aa30.3■■■□□ 2.44
COMMD4-222ENST00000568034 SYNJ2O15056 1496 aa30.25■■■□□ 2.43
COMMD4-222ENST00000568034 CHD1O14646 1710 aa30.24■■■□□ 2.43
COMMD4-222ENST00000568034 FHAD1B1AJZ9 1412 aa30.22■■■□□ 2.43
COMMD4-222ENST00000568034 CUL7Q14999 1698 aa30.18■■■□□ 2.42
COMMD4-222ENST00000568034 EEA1Q15075 1411 aa30.13■■■□□ 2.41
COMMD4-222ENST00000568034 GRIN2AQ12879 1464 aa30.12■■■□□ 2.41
COMMD4-222ENST00000568034 CHMP7Q8WUX9 453 aaPredicted RBP30.12■■■□□ 2.41
COMMD4-222ENST00000568034 FBLN2P98095 1184 aa30.11■■■□□ 2.41
COMMD4-222ENST00000568034 CARMIL1Q5VZK9 1371 aa30.11■■■□□ 2.41
COMMD4-222ENST00000568034 OSCARQ8IYS5 282 aa30.03■■■□□ 2.4
COMMD4-222ENST00000568034 PRXQ9BXM0 1461 aa30.03■■■□□ 2.4
COMMD4-222ENST00000568034 CSRNP3Q8WYN3 585 aa30.02■■■□□ 2.4
COMMD4-222ENST00000568034 NUP160Q12769 1436 aa30■■■□□ 2.39
COMMD4-222ENST00000568034 FAM9AQ8IZU1 332 aaPredicted RBP29.99■■■□□ 2.39
COMMD4-222ENST00000568034 CEP170Q5SW79 1584 aa29.98■■■□□ 2.39
COMMD4-222ENST00000568034 RAPGEF2Q9Y4G8 1499 aa29.98■■■□□ 2.39
COMMD4-222ENST00000568034 CLASP1Q7Z460 1538 aa29.96■■■□□ 2.39
COMMD4-222ENST00000568034 KIF21BO75037 1637 aa29.84■■■□□ 2.37
COMMD4-222ENST00000568034 KIAA0586Q9BVV6 1533 aa29.77■■■□□ 2.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms