RNA–Protein interactions for RNA: ENST00000567195.5

COMMD4-217, Transcript of COMM domain containing 4, humanhuman

TSL 2 BASIC

Gene COMMD4, Length 677 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-217ENST00000567195 NISCHQ9Y2I1 1504 aa37.85■■■■□ 3.65
COMMD4-217ENST00000567195 CCDC180Q9P1Z9 1646 aa33.63■■■□□ 2.97
COMMD4-217ENST00000567195 ABCC9O60706 1549 aa32.91■■■□□ 2.86
COMMD4-217ENST00000567195 DCAF8L2P0C7V8 631 aa31.73■■■□□ 2.67
COMMD4-217ENST00000567195 RB1CC1Q8TDY2 1594 aa31.68■■■□□ 2.66
COMMD4-217ENST00000567195 NACADO15069 1562 aa31.64■■■□□ 2.65
COMMD4-217ENST00000567195 ZCCHC6Q5VYS8 1495 aaKnown RBP31.52■■■□□ 2.64
COMMD4-217ENST00000567195 MYO15BQ96JP2 1530 aa31.44■■■□□ 2.62
COMMD4-217ENST00000567195 DCAF1Q9Y4B6 1507 aa31.32■■■□□ 2.6
COMMD4-217ENST00000567195 UNC13AQ9UPW8 1703 aa30.89■■■□□ 2.54
COMMD4-217ENST00000567195 PABPN1Q86U42 306 aaKnown RBP eCLIP30.78■■■□□ 2.52
COMMD4-217ENST00000567195 SCRIBQ14160 1630 aa30.69■■■□□ 2.5
COMMD4-217ENST00000567195 BICRAQ9NZM4 1560 aa30.66■■■□□ 2.5
COMMD4-217ENST00000567195 SHROOM4Q9ULL8 1493 aa30.41■■■□□ 2.46
COMMD4-217ENST00000567195 DNAJC5BQ9UF47 199 aa30.2■■■□□ 2.43
COMMD4-217ENST00000567195 EIF4G1Q04637 1599 aaKnown RBP29.88■■■□□ 2.37
COMMD4-217ENST00000567195 CC2D2AQ9P2K1 1620 aa29.76■■■□□ 2.35
COMMD4-217ENST00000567195 CECR2Q9BXF3 1484 aa29.61■■■□□ 2.33
COMMD4-217ENST00000567195 SMARCA4P51532 1647 aa29.36■■■□□ 2.29
COMMD4-217ENST00000567195 BAZ1AQ9NRL2 1556 aaPredicted RBP29.35■■■□□ 2.29
COMMD4-217ENST00000567195 ATAD2BQ9ULI0 1458 aa29.21■■■□□ 2.27
COMMD4-217ENST00000567195 SMARCA2P51531 1590 aa29.19■■■□□ 2.26
COMMD4-217ENST00000567195 NCAPD3P42695 1498 aa29.19■■■□□ 2.26
COMMD4-217ENST00000567195 MROH2BQ7Z745 1585 aa29.16■■■□□ 2.26
COMMD4-217ENST00000567195 PEG3Q9GZU2 1588 aa29.05■■■□□ 2.24
COMMD4-217ENST00000567195 HMGXB3Q12766 1538 aa29.04■■■□□ 2.24
COMMD4-217ENST00000567195 BAZ1BQ9UIG0 1483 aaKnown RBP28.98■■■□□ 2.23
COMMD4-217ENST00000567195 WIZO95785 1651 aa28.85■■■□□ 2.21
COMMD4-217ENST00000567195 RSF1Q96T23 1441 aaPredicted RBP28.85■■■□□ 2.21
COMMD4-217ENST00000567195 TOP2AP11388 1531 aaKnown RBP28.55■■■□□ 2.16
COMMD4-217ENST00000567195 ERCC6Q03468 1493 aa28.47■■■□□ 2.15
COMMD4-217ENST00000567195 NESP48681 1621 aa28.46■■■□□ 2.15
COMMD4-217ENST00000567195 LAMC3Q9Y6N6 1575 aa28.42■■■□□ 2.14
COMMD4-217ENST00000567195 CADPSQ9ULU8 1353 aa28.37■■■□□ 2.13
COMMD4-217ENST00000567195 PDS5BQ9NTI5 1447 aa28.27■■■□□ 2.12
COMMD4-217ENST00000567195 CCDC88BA6NC98 1476 aa28.23■■■□□ 2.11
COMMD4-217ENST00000567195 SUPT5HO00267 1087 aaKnown RBP28.22■■■□□ 2.11
COMMD4-217ENST00000567195 CUX2O14529 1486 aa28.21■■■□□ 2.11
COMMD4-217ENST00000567195 CFTRP13569 1480 aa28.17■■■□□ 2.1
COMMD4-217ENST00000567195 KIF21AQ7Z4S6 1674 aa28.11■■■□□ 2.09
COMMD4-217ENST00000567195 FANCD2Q9BXW9 1451 aa28.02■■■□□ 2.08
COMMD4-217ENST00000567195 THOC2Q8NI27 1593 aaKnown RBP28■■■□□ 2.07
COMMD4-217ENST00000567195 CEP164Q9UPV0 1460 aa28■■■□□ 2.07
COMMD4-217ENST00000567195 PRDM2Q13029 1718 aa27.94■■■□□ 2.06
COMMD4-217ENST00000567195 MRC2Q9UBG0 1479 aa27.94■■■□□ 2.06
COMMD4-217ENST00000567195 WDR62O43379 1518 aa27.82■■■□□ 2.04
COMMD4-217ENST00000567195 URB2Q14146 1524 aaKnown RBP27.72■■■□□ 2.03
COMMD4-217ENST00000567195 ABCC8Q09428 1581 aa27.61■■■□□ 2.01
COMMD4-217ENST00000567195 TOPBP1Q92547 1522 aa27.57■■■□□ 2
COMMD4-217ENST00000567195 DNMBPQ6XZF7 1577 aa27.54■■■□□ 2
COMMD4-217ENST00000567195 DNAJC5Q9H3Z4 198 aa27.49■■□□□ 1.99
COMMD4-217ENST00000567195 IFT140Q96RY7 1462 aa27.41■■□□□ 1.98
COMMD4-217ENST00000567195 CUX1P39880 1505 aa27.36■■□□□ 1.97
COMMD4-217ENST00000567195 POLA1P09884 1462 aaPredicted RBP27.33■■□□□ 1.97
COMMD4-217ENST00000567195 FGD5Q6ZNL6 1462 aa27.27■■□□□ 1.96
COMMD4-217ENST00000567195 SOGA1O94964 1423 aa27.26■■□□□ 1.95
COMMD4-217ENST00000567195 ZNF608Q9ULD9 1512 aaPredicted RBP27.25■■□□□ 1.95
COMMD4-217ENST00000567195 TARBP1Q13395 1621 aaKnown RBP27.24■■□□□ 1.95
COMMD4-217ENST00000567195 WRNQ14191 1432 aaPredicted RBP eCLIP27.23■■□□□ 1.95
COMMD4-217ENST00000567195 RAD54L2Q9Y4B4 1467 aa27.22■■□□□ 1.95
COMMD4-217ENST00000567195 TOP2BQ02880 1626 aa27.14■■□□□ 1.94
COMMD4-217ENST00000567195 EIF4G3O43432 1585 aaKnown RBP27.14■■□□□ 1.93
COMMD4-217ENST00000567195 AQRO60306 1485 aaKnown RBP eCLIP27.13■■□□□ 1.93
COMMD4-217ENST00000567195 BIVM-ERCC5R4GMW8 1640 aa27.12■■□□□ 1.93
COMMD4-217ENST00000567195 SYNJ1O43426 1573 aa27.11■■□□□ 1.93
COMMD4-217ENST00000567195 TDRD9Q8NDG6 1382 aaKnown RBP27.09■■□□□ 1.93
COMMD4-217ENST00000567195 WDR97A6NE52 1622 aa27.06■■□□□ 1.92
COMMD4-217ENST00000567195 OSCARQ8IYS5 282 aa27.05■■□□□ 1.92
COMMD4-217ENST00000567195 ABCA10Q8WWZ4 1543 aa27.01■■□□□ 1.91
COMMD4-217ENST00000567195 GAPVD1Q14C86 1478 aa26.93■■□□□ 1.9
COMMD4-217ENST00000567195 GRIN2BQ13224 1484 aa26.93■■□□□ 1.9
COMMD4-217ENST00000567195 SNAPC4Q5SXM2 1469 aa26.87■■□□□ 1.89
COMMD4-217ENST00000567195 ABCA5Q8WWZ7 1642 aa26.87■■□□□ 1.89
COMMD4-217ENST00000567195 FBLN2P98095 1184 aa26.87■■□□□ 1.89
COMMD4-217ENST00000567195 MAGI1Q96QZ7 1491 aaPredicted RBP26.85■■□□□ 1.89
COMMD4-217ENST00000567195 PBRM1Q86U86 1689 aa26.84■■□□□ 1.89
COMMD4-217ENST00000567195 CHD1O14646 1710 aa26.79■■□□□ 1.88
COMMD4-217ENST00000567195 CHMP7Q8WUX9 453 aaPredicted RBP26.79■■□□□ 1.88
COMMD4-217ENST00000567195 SYNJ2O15056 1496 aa26.74■■□□□ 1.87
COMMD4-217ENST00000567195 ERICH3Q5RHP9 1530 aa26.7■■□□□ 1.87
COMMD4-217ENST00000567195 KIF27Q86VH2 1401 aa26.68■■□□□ 1.86
COMMD4-217ENST00000567195 TRIM41Q8WV44 630 aa26.66■■□□□ 1.86
COMMD4-217ENST00000567195 FHAD1B1AJZ9 1412 aa26.63■■□□□ 1.85
COMMD4-217ENST00000567195 ADAMTS12P58397 1594 aa26.63■■□□□ 1.85
COMMD4-217ENST00000567195 GRIN2AQ12879 1464 aa26.56■■□□□ 1.84
COMMD4-217ENST00000567195 IGF1RP08069 1367 aa26.54■■□□□ 1.84
COMMD4-217ENST00000567195 RIMBP3CA6NJZ7 1639 aa26.53■■□□□ 1.84
COMMD4-217ENST00000567195 RIMBP3BA6NNM3 1639 aa26.53■■□□□ 1.84
COMMD4-217ENST00000567195 RIMBP3Q9UFD9 1639 aa26.53■■□□□ 1.84
COMMD4-217ENST00000567195 ARHGEF11O15085 1522 aa26.51■■□□□ 1.83
COMMD4-217ENST00000567195 CLASP1Q7Z460 1538 aa26.49■■□□□ 1.83
COMMD4-217ENST00000567195 CUL7Q14999 1698 aa26.46■■□□□ 1.83
COMMD4-217ENST00000567195 NUP160Q12769 1436 aa26.43■■□□□ 1.82
COMMD4-217ENST00000567195 CARMIL1Q5VZK9 1371 aa26.41■■□□□ 1.82
COMMD4-217ENST00000567195 CEP170Q5SW79 1584 aa26.41■■□□□ 1.82
COMMD4-217ENST00000567195 RUSC2Q8N2Y8 1516 aa26.39■■□□□ 1.81
COMMD4-217ENST00000567195 CYB5RLQ6IPT4 315 aa26.32■■□□□ 1.8
COMMD4-217ENST00000567195 CHIC1Q5VXU3 224 aa26.31■■□□□ 1.8
COMMD4-217ENST00000567195 RAPGEF2Q9Y4G8 1499 aa26.25■■□□□ 1.79
COMMD4-217ENST00000567195 ARAP1Q96P48 1450 aa26.23■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms