RNA–Protein interactions for RNA: ENST00000567143.1

GINS3-206, Transcript of GINS complex subunit 3, humanhuman

Gene GINS3, Length 3,202 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GINS3-206ENST00000567143 NISCHQ9Y2I1 1504 aa14.24□□□□□ -0.13
GINS3-206ENST00000567143 CCDC180Q9P1Z9 1646 aa12.91□□□□□ -0.34
GINS3-206ENST00000567143 MYO15BQ96JP2 1530 aa12.19□□□□□ -0.46
GINS3-206ENST00000567143 DCAF1Q9Y4B6 1507 aa12.06□□□□□ -0.48
GINS3-206ENST00000567143 ABCC9O60706 1549 aa11.99□□□□□ -0.49
GINS3-206ENST00000567143 NACADO15069 1562 aa11.96□□□□□ -0.49
GINS3-206ENST00000567143 ZCCHC6Q5VYS8 1495 aaKnown RBP11.93□□□□□ -0.5
GINS3-206ENST00000567143 RB1CC1Q8TDY2 1594 aa11.87□□□□□ -0.51
GINS3-206ENST00000567143 SHROOM4Q9ULL8 1493 aa11.82□□□□□ -0.52
GINS3-206ENST00000567143 UNC13AQ9UPW8 1703 aa11.64□□□□□ -0.55
GINS3-206ENST00000567143 BICRAQ9NZM4 1560 aa11.55□□□□□ -0.56
GINS3-206ENST00000567143 SCRIBQ14160 1630 aa11.33□□□□□ -0.6
GINS3-206ENST00000567143 SUPT5HO00267 1087 aaKnown RBP11.28□□□□□ -0.6
GINS3-206ENST00000567143 EIF4G1Q04637 1599 aaKnown RBP11.15□□□□□ -0.62
GINS3-206ENST00000567143 DCAF8L2P0C7V8 631 aa11.15□□□□□ -0.62
GINS3-206ENST00000567143 PEG3Q9GZU2 1588 aa11.14□□□□□ -0.63
GINS3-206ENST00000567143 PABPN1Q86U42 306 aaKnown RBP eCLIP11.06□□□□□ -0.64
GINS3-206ENST00000567143 CC2D2AQ9P2K1 1620 aa11.06□□□□□ -0.64
GINS3-206ENST00000567143 BAZ1AQ9NRL2 1556 aaPredicted RBP11.04□□□□□ -0.64
GINS3-206ENST00000567143 SMARCA4P51532 1647 aa11.03□□□□□ -0.64
GINS3-206ENST00000567143 SMARCA2P51531 1590 aa11.02□□□□□ -0.64
GINS3-206ENST00000567143 HMGXB3Q12766 1538 aa11.01□□□□□ -0.65
GINS3-206ENST00000567143 NCAPD3P42695 1498 aa11□□□□□ -0.65
GINS3-206ENST00000567143 DNAJC5BQ9UF47 199 aa10.94□□□□□ -0.66
GINS3-206ENST00000567143 ATAD2BQ9ULI0 1458 aa10.92□□□□□ -0.66
GINS3-206ENST00000567143 CECR2Q9BXF3 1484 aa10.91□□□□□ -0.66
GINS3-206ENST00000567143 MROH2BQ7Z745 1585 aa10.87□□□□□ -0.67
GINS3-206ENST00000567143 PCGF6Q9BYE7 350 aa10.83□□□□□ -0.68
GINS3-206ENST00000567143 RSF1Q96T23 1441 aaPredicted RBP10.78□□□□□ -0.68
GINS3-206ENST00000567143 PRDM2Q13029 1718 aa10.77□□□□□ -0.68
GINS3-206ENST00000567143 TOP2AP11388 1531 aaKnown RBP10.77□□□□□ -0.69
GINS3-206ENST00000567143 CHIC1Q5VXU3 224 aa10.75□□□□□ -0.69
GINS3-206ENST00000567143 PPARGC1BQ86YN6 1023 aaKnown RBP10.75□□□□□ -0.69
GINS3-206ENST00000567143 BAZ1BQ9UIG0 1483 aaKnown RBP10.74□□□□□ -0.69
GINS3-206ENST00000567143 WIZO95785 1651 aa10.73□□□□□ -0.69
GINS3-206ENST00000567143 LAMC3Q9Y6N6 1575 aa10.7□□□□□ -0.7
GINS3-206ENST00000567143 LOC105371045A0A1W2PR82 267 aa10.69□□□□□ -0.7
GINS3-206ENST00000567143 HRCP23327 699 aa10.67□□□□□ -0.7
GINS3-206ENST00000567143 EHMT2Q96KQ7 1210 aa10.67□□□□□ -0.7
GINS3-206ENST00000567143 CFTRP13569 1480 aa10.59□□□□□ -0.71
GINS3-206ENST00000567143 CADPSQ9ULU8 1353 aa10.55□□□□□ -0.72
GINS3-206ENST00000567143 THOC2Q8NI27 1593 aaKnown RBP10.54□□□□□ -0.72
GINS3-206ENST00000567143 CUX2O14529 1486 aa10.53□□□□□ -0.72
GINS3-206ENST00000567143 FAM9AQ8IZU1 332 aaPredicted RBP10.52□□□□□ -0.72
GINS3-206ENST00000567143 CCDC88BA6NC98 1476 aa10.52□□□□□ -0.73
GINS3-206ENST00000567143 WDR97A6NE52 1622 aa10.51□□□□□ -0.73
GINS3-206ENST00000567143 WDR62O43379 1518 aa10.49□□□□□ -0.73
GINS3-206ENST00000567143 PDS5BQ9NTI5 1447 aa10.48□□□□□ -0.73
GINS3-206ENST00000567143 KIF21AQ7Z4S6 1674 aa10.47□□□□□ -0.73
GINS3-206ENST00000567143 NESP48681 1621 aa10.44□□□□□ -0.74
GINS3-206ENST00000567143 MRC2Q9UBG0 1479 aa10.42□□□□□ -0.74
GINS3-206ENST00000567143 ABCC8Q09428 1581 aa10.4□□□□□ -0.74
GINS3-206ENST00000567143 FANCD2Q9BXW9 1451 aa10.39□□□□□ -0.75
GINS3-206ENST00000567143 CEP164Q9UPV0 1460 aa10.38□□□□□ -0.75
GINS3-206ENST00000567143 DNMBPQ6XZF7 1577 aa10.34□□□□□ -0.75
GINS3-206ENST00000567143 ERCC6Q03468 1493 aa10.33□□□□□ -0.76
GINS3-206ENST00000567143 URB2Q14146 1524 aaKnown RBP10.33□□□□□ -0.76
GINS3-206ENST00000567143 TTBK1Q5TCY1 1321 aaPredicted RBP10.31□□□□□ -0.76
GINS3-206ENST00000567143 TRIM41Q8WV44 630 aa10.31□□□□□ -0.76
GINS3-206ENST00000567143 TRIM26Q12899 539 aaPredicted RBP10.31□□□□□ -0.76
GINS3-206ENST00000567143 BIVM-ERCC5R4GMW8 1640 aa10.3□□□□□ -0.76
GINS3-206ENST00000567143 TOPBP1Q92547 1522 aa10.28□□□□□ -0.76
GINS3-206ENST00000567143 TARBP1Q13395 1621 aaKnown RBP10.27□□□□□ -0.77
GINS3-206ENST00000567143 IFT140Q96RY7 1462 aa10.25□□□□□ -0.77
GINS3-206ENST00000567143 TOP2BQ02880 1626 aa10.24□□□□□ -0.77
GINS3-206ENST00000567143 CUX1P39880 1505 aa10.22□□□□□ -0.77
GINS3-206ENST00000567143 POLA1P09884 1462 aaPredicted RBP10.17□□□□□ -0.78
GINS3-206ENST00000567143 ABCA10Q8WWZ4 1543 aa10.16□□□□□ -0.78
GINS3-206ENST00000567143 ABCA5Q8WWZ7 1642 aa10.16□□□□□ -0.78
GINS3-206ENST00000567143 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.14□□□□□ -0.79
GINS3-206ENST00000567143 SYNJ1O43426 1573 aa10.13□□□□□ -0.79
GINS3-206ENST00000567143 EIF4G3O43432 1585 aaKnown RBP10.12□□□□□ -0.79
GINS3-206ENST00000567143 FGD5Q6ZNL6 1462 aa10.12□□□□□ -0.79
GINS3-206ENST00000567143 WRNQ14191 1432 aaPredicted RBP eCLIP10.1□□□□□ -0.79
GINS3-206ENST00000567143 ERICH3Q5RHP9 1530 aa10.07□□□□□ -0.8
GINS3-206ENST00000567143 PBRM1Q86U86 1689 aa10.07□□□□□ -0.8
GINS3-206ENST00000567143 MAGI1Q96QZ7 1491 aaPredicted RBP10.06□□□□□ -0.8
GINS3-206ENST00000567143 CCER1Q8TC90 406 aaPredicted RBP10.06□□□□□ -0.8
GINS3-206ENST00000567143 SOGA1O94964 1423 aa10.05□□□□□ -0.8
GINS3-206ENST00000567143 SCAF1Q9H7N4 1312 aaKnown RBP10.05□□□□□ -0.8
GINS3-206ENST00000567143 ZNF608Q9ULD9 1512 aaPredicted RBP10.04□□□□□ -0.8
GINS3-206ENST00000567143 GRIN2BQ13224 1484 aa10.03□□□□□ -0.8
GINS3-206ENST00000567143 ZEB1P37275 1124 aaPredicted RBP10.03□□□□□ -0.8
GINS3-206ENST00000567143 ADAMTS12P58397 1594 aa10□□□□□ -0.81
GINS3-206ENST00000567143 RAD54L2Q9Y4B4 1467 aa10□□□□□ -0.81
GINS3-206ENST00000567143 CUL7Q14999 1698 aa10□□□□□ -0.81
GINS3-206ENST00000567143 CLASP1Q7Z460 1538 aa9.99□□□□□ -0.81
GINS3-206ENST00000567143 GAPVD1Q14C86 1478 aa9.98□□□□□ -0.81
GINS3-206ENST00000567143 SYNJ2O15056 1496 aa9.97□□□□□ -0.81
GINS3-206ENST00000567143 RANGAP1P46060 587 aaPredicted RBP9.97□□□□□ -0.81
GINS3-206ENST00000567143 SHROOM2Q13796 1616 aa9.96□□□□□ -0.81
GINS3-206ENST00000567143 CHD1O14646 1710 aa9.96□□□□□ -0.82
GINS3-206ENST00000567143 NUP160Q12769 1436 aa9.94□□□□□ -0.82
GINS3-206ENST00000567143 FHAD1B1AJZ9 1412 aa9.93□□□□□ -0.82
GINS3-206ENST00000567143 YTHDC1Q96MU7 727 aaKnown RBP9.93□□□□□ -0.82
GINS3-206ENST00000567143 AQRO60306 1485 aaKnown RBP eCLIP9.93□□□□□ -0.82
GINS3-206ENST00000567143 SNAPC4Q5SXM2 1469 aa9.92□□□□□ -0.82
GINS3-206ENST00000567143 NEUROD1Q13562 356 aa9.91□□□□□ -0.82
GINS3-206ENST00000567143 DNAJC5Q9H3Z4 198 aa9.9□□□□□ -0.82
GINS3-206ENST00000567143 KIF27Q86VH2 1401 aa9.9□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 112.1 ms