RNA–Protein interactions for RNA: ENST00000567060.5

CLN6-208, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 945 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-208ENST00000567060 NISCHQ9Y2I1 1504 aa39.84■■■■□ 3.97
CLN6-208ENST00000567060 ABCC9O60706 1549 aa36.29■■■■□ 3.4
CLN6-208ENST00000567060 CCDC180Q9P1Z9 1646 aa35.75■■■■□ 3.31
CLN6-208ENST00000567060 DNAJC5BQ9UF47 199 aa34.58■■■■□ 3.13
CLN6-208ENST00000567060 RB1CC1Q8TDY2 1594 aa34.27■■■■□ 3.08
CLN6-208ENST00000567060 NACADO15069 1562 aa33.96■■■■□ 3.03
CLN6-208ENST00000567060 DCAF8L2P0C7V8 631 aa33.8■■■■□ 3
CLN6-208ENST00000567060 PABPN1Q86U42 306 aaKnown RBP eCLIP33.8■■■■□ 3
CLN6-208ENST00000567060 UNC13AQ9UPW8 1703 aa33.5■■■□□ 2.95
CLN6-208ENST00000567060 BICRAQ9NZM4 1560 aa33.38■■■□□ 2.93
CLN6-208ENST00000567060 MYO15BQ96JP2 1530 aa33.37■■■□□ 2.93
CLN6-208ENST00000567060 ZCCHC6Q5VYS8 1495 aaKnown RBP33.28■■■□□ 2.92
CLN6-208ENST00000567060 DCAF1Q9Y4B6 1507 aa33.11■■■□□ 2.89
CLN6-208ENST00000567060 SHROOM4Q9ULL8 1493 aa32.77■■■□□ 2.84
CLN6-208ENST00000567060 CC2D2AQ9P2K1 1620 aa32.73■■■□□ 2.83
CLN6-208ENST00000567060 CECR2Q9BXF3 1484 aa32.72■■■□□ 2.83
CLN6-208ENST00000567060 SCRIBQ14160 1630 aa32.6■■■□□ 2.81
CLN6-208ENST00000567060 EIF4G1Q04637 1599 aaKnown RBP32.55■■■□□ 2.8
CLN6-208ENST00000567060 DNAJC5Q9H3Z4 198 aa31.99■■■□□ 2.71
CLN6-208ENST00000567060 NCAPD3P42695 1498 aa31.43■■■□□ 2.62
CLN6-208ENST00000567060 CUX2O14529 1486 aa31.39■■■□□ 2.62
CLN6-208ENST00000567060 ERCC6Q03468 1493 aa31.28■■■□□ 2.6
CLN6-208ENST00000567060 ATAD2BQ9ULI0 1458 aa31.27■■■□□ 2.6
CLN6-208ENST00000567060 NESP48681 1621 aa31.09■■■□□ 2.57
CLN6-208ENST00000567060 SMARCA2P51531 1590 aa31.07■■■□□ 2.56
CLN6-208ENST00000567060 HMGXB3Q12766 1538 aa31.07■■■□□ 2.56
CLN6-208ENST00000567060 SMARCA4P51532 1647 aa31.06■■■□□ 2.56
CLN6-208ENST00000567060 BAZ1AQ9NRL2 1556 aaPredicted RBP30.89■■■□□ 2.54
CLN6-208ENST00000567060 BAZ1BQ9UIG0 1483 aaKnown RBP30.88■■■□□ 2.53
CLN6-208ENST00000567060 PEG3Q9GZU2 1588 aa30.79■■■□□ 2.52
CLN6-208ENST00000567060 THOC2Q8NI27 1593 aaKnown RBP30.76■■■□□ 2.52
CLN6-208ENST00000567060 LAMC3Q9Y6N6 1575 aa30.7■■■□□ 2.5
CLN6-208ENST00000567060 MROH2BQ7Z745 1585 aa30.66■■■□□ 2.5
CLN6-208ENST00000567060 PDS5BQ9NTI5 1447 aa30.57■■■□□ 2.48
CLN6-208ENST00000567060 KIF21AQ7Z4S6 1674 aa30.57■■■□□ 2.48
CLN6-208ENST00000567060 CADPSQ9ULU8 1353 aa30.46■■■□□ 2.47
CLN6-208ENST00000567060 RSF1Q96T23 1441 aaPredicted RBP30.46■■■□□ 2.47
CLN6-208ENST00000567060 TRIM41Q8WV44 630 aa30.35■■■□□ 2.45
CLN6-208ENST00000567060 MRC2Q9UBG0 1479 aa30.32■■■□□ 2.44
CLN6-208ENST00000567060 WIZO95785 1651 aa30.3■■■□□ 2.44
CLN6-208ENST00000567060 WDR62O43379 1518 aa30.26■■■□□ 2.43
CLN6-208ENST00000567060 TOP2AP11388 1531 aaKnown RBP30.11■■■□□ 2.41
CLN6-208ENST00000567060 CEP164Q9UPV0 1460 aa30.1■■■□□ 2.41
CLN6-208ENST00000567060 FANCD2Q9BXW9 1451 aa30.07■■■□□ 2.4
CLN6-208ENST00000567060 CFTRP13569 1480 aa30.01■■■□□ 2.4
CLN6-208ENST00000567060 OSCARQ8IYS5 282 aa29.98■■■□□ 2.39
CLN6-208ENST00000567060 URB2Q14146 1524 aaKnown RBP29.88■■■□□ 2.37
CLN6-208ENST00000567060 SUPT5HO00267 1087 aaKnown RBP29.85■■■□□ 2.37
CLN6-208ENST00000567060 CCDC88BA6NC98 1476 aa29.68■■■□□ 2.34
CLN6-208ENST00000567060 ZNF608Q9ULD9 1512 aaPredicted RBP29.61■■■□□ 2.33
CLN6-208ENST00000567060 RIMBP3CA6NJZ7 1639 aa29.56■■■□□ 2.32
CLN6-208ENST00000567060 RIMBP3BA6NNM3 1639 aa29.56■■■□□ 2.32
CLN6-208ENST00000567060 RIMBP3Q9UFD9 1639 aa29.56■■■□□ 2.32
CLN6-208ENST00000567060 IFT140Q96RY7 1462 aa29.54■■■□□ 2.32
CLN6-208ENST00000567060 PRDM2Q13029 1718 aa29.51■■■□□ 2.32
CLN6-208ENST00000567060 TOPBP1Q92547 1522 aa29.45■■■□□ 2.31
CLN6-208ENST00000567060 ARHGEF11O15085 1522 aa29.44■■■□□ 2.3
CLN6-208ENST00000567060 CYB5RLQ6IPT4 315 aa29.33■■■□□ 2.29
CLN6-208ENST00000567060 ABCC8Q09428 1581 aa29.33■■■□□ 2.29
CLN6-208ENST00000567060 EIF4G3O43432 1585 aaKnown RBP29.31■■■□□ 2.28
CLN6-208ENST00000567060 AQRO60306 1485 aaKnown RBP eCLIP29.29■■■□□ 2.282e-7■■■■□ 23.4
CLN6-208ENST00000567060 DNMBPQ6XZF7 1577 aa29.26■■■□□ 2.28
CLN6-208ENST00000567060 TARBP1Q13395 1621 aaKnown RBP29.23■■■□□ 2.27
CLN6-208ENST00000567060 CHD1O14646 1710 aa29.16■■■□□ 2.26
CLN6-208ENST00000567060 FBLN2P98095 1184 aa29.15■■■□□ 2.26
CLN6-208ENST00000567060 POLA1P09884 1462 aaPredicted RBP29.14■■■□□ 2.26
CLN6-208ENST00000567060 ARAP1Q96P48 1450 aa29.14■■■□□ 2.26
CLN6-208ENST00000567060 TRHP20396 242 aaPredicted RBP29.08■■■□□ 2.25
CLN6-208ENST00000567060 RAD54L2Q9Y4B4 1467 aa29.08■■■□□ 2.25
CLN6-208ENST00000567060 TDRD9Q8NDG6 1382 aaKnown RBP29.05■■■□□ 2.24
CLN6-208ENST00000567060 SOGA1O94964 1423 aa29.03■■■□□ 2.24
CLN6-208ENST00000567060 SNAPC4Q5SXM2 1469 aa28.91■■■□□ 2.22
CLN6-208ENST00000567060 CHMP7Q8WUX9 453 aaPredicted RBP28.88■■■□□ 2.21
CLN6-208ENST00000567060 FGD5Q6ZNL6 1462 aa28.88■■■□□ 2.21
CLN6-208ENST00000567060 CLASP1Q7Z460 1538 aa28.88■■■□□ 2.21
CLN6-208ENST00000567060 CUX1P39880 1505 aa28.81■■■□□ 2.2
CLN6-208ENST00000567060 WDR97A6NE52 1622 aa28.8■■■□□ 2.2
CLN6-208ENST00000567060 MAGI1Q96QZ7 1491 aaPredicted RBP28.79■■■□□ 2.2
CLN6-208ENST00000567060 GRIN2BQ13224 1484 aa28.78■■■□□ 2.2
CLN6-208ENST00000567060 SYNJ1O43426 1573 aa28.75■■■□□ 2.19
CLN6-208ENST00000567060 WRNQ14191 1432 aaPredicted RBP eCLIP28.74■■■□□ 2.191e-9■■■■■ 46
CLN6-208ENST00000567060 SYNJ2O15056 1496 aa28.73■■■□□ 2.19
CLN6-208ENST00000567060 TOP2BQ02880 1626 aa28.65■■■□□ 2.18
CLN6-208ENST00000567060 BIVM-ERCC5R4GMW8 1640 aa28.65■■■□□ 2.18
CLN6-208ENST00000567060 GAPVD1Q14C86 1478 aa28.63■■■□□ 2.17
CLN6-208ENST00000567060 PBRM1Q86U86 1689 aa28.55■■■□□ 2.16
CLN6-208ENST00000567060 ABCA10Q8WWZ4 1543 aa28.53■■■□□ 2.16
CLN6-208ENST00000567060 AEBP2Q6ZN18 517 aaPredicted RBP28.5■■■□□ 2.15
CLN6-208ENST00000567060 ABCA5Q8WWZ7 1642 aa28.49■■■□□ 2.15
CLN6-208ENST00000567060 ERCC6L2Q5T890 1561 aa28.45■■■□□ 2.14
CLN6-208ENST00000567060 GRIN2AQ12879 1464 aa28.4■■■□□ 2.14
CLN6-208ENST00000567060 NUP160Q12769 1436 aa28.35■■■□□ 2.13
CLN6-208ENST00000567060 CEP170Q5SW79 1584 aa28.33■■■□□ 2.13
CLN6-208ENST00000567060 ADAMTS12P58397 1594 aa28.29■■■□□ 2.12
CLN6-208ENST00000567060 FHAD1B1AJZ9 1412 aa28.25■■■□□ 2.11
CLN6-208ENST00000567060 SHROOM2Q13796 1616 aa28.23■■■□□ 2.11
CLN6-208ENST00000567060 CHIC1Q5VXU3 224 aa28.15■■■□□ 2.1
CLN6-208ENST00000567060 KIF27Q86VH2 1401 aa28.15■■■□□ 2.1
CLN6-208ENST00000567060 ERICH3Q5RHP9 1530 aa28.14■■■□□ 2.1
CLN6-208ENST00000567060 JPH4Q96JJ6 628 aa28.13■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms