RNA–Protein interactions for RNA: ENST00000566385.2

LINC00562-201, long intergenic non-protein coding RNA 562, humanhuman

BASIC

Gene LINC00562, Length 2,470 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00562-201ENST00000566385 NISCHQ9Y2I1 1504 aa25.56■■□□□ 1.68
LINC00562-201ENST00000566385 CCDC180Q9P1Z9 1646 aa22.14■■□□□ 1.14
LINC00562-201ENST00000566385 ZCCHC6Q5VYS8 1495 aaKnown RBP21.47■■□□□ 1.03
LINC00562-201ENST00000566385 DCAF8L2P0C7V8 631 aa21.28■■□□□ 1
LINC00562-201ENST00000566385 SHROOM4Q9ULL8 1493 aa21.11■□□□□ 0.97
LINC00562-201ENST00000566385 ABCC9O60706 1549 aa21.08■□□□□ 0.97
LINC00562-201ENST00000566385 DCAF1Q9Y4B6 1507 aa21.02■□□□□ 0.96
LINC00562-201ENST00000566385 MYO15BQ96JP2 1530 aa20.71■□□□□ 0.91
LINC00562-201ENST00000566385 NACADO15069 1562 aa20.63■□□□□ 0.89
LINC00562-201ENST00000566385 SCRIBQ14160 1630 aa20.54■□□□□ 0.88
LINC00562-201ENST00000566385 RB1CC1Q8TDY2 1594 aa20.46■□□□□ 0.87
LINC00562-201ENST00000566385 SUPT5HO00267 1087 aaKnown RBP20.33■□□□□ 0.84
LINC00562-201ENST00000566385 UNC13AQ9UPW8 1703 aa20.16■□□□□ 0.82
LINC00562-201ENST00000566385 CECR2Q9BXF3 1484 aa19.97■□□□□ 0.79
LINC00562-201ENST00000566385 PABPN1Q86U42 306 aaKnown RBP eCLIP19.96■□□□□ 0.79
LINC00562-201ENST00000566385 BICRAQ9NZM4 1560 aa19.94■□□□□ 0.78
LINC00562-201ENST00000566385 RSF1Q96T23 1441 aaPredicted RBP19.9■□□□□ 0.78
LINC00562-201ENST00000566385 MROH2BQ7Z745 1585 aa19.82■□□□□ 0.76
LINC00562-201ENST00000566385 BAZ1AQ9NRL2 1556 aaPredicted RBP19.69■□□□□ 0.74
LINC00562-201ENST00000566385 WIZO95785 1651 aa19.68■□□□□ 0.74
LINC00562-201ENST00000566385 SMARCA4P51532 1647 aa19.63■□□□□ 0.73
LINC00562-201ENST00000566385 CHIC1Q5VXU3 224 aa19.43■□□□□ 0.7
LINC00562-201ENST00000566385 TOP2AP11388 1531 aaKnown RBP19.36■□□□□ 0.69
LINC00562-201ENST00000566385 PEG3Q9GZU2 1588 aa19.33■□□□□ 0.68
LINC00562-201ENST00000566385 EIF4G1Q04637 1599 aaKnown RBP19.3■□□□□ 0.68
LINC00562-201ENST00000566385 ATAD2BQ9ULI0 1458 aa19.3■□□□□ 0.68
LINC00562-201ENST00000566385 CCDC88BA6NC98 1476 aa19.25■□□□□ 0.67
LINC00562-201ENST00000566385 SMARCA2P51531 1590 aa19.23■□□□□ 0.67
LINC00562-201ENST00000566385 BAZ1BQ9UIG0 1483 aaKnown RBP19.19■□□□□ 0.66
LINC00562-201ENST00000566385 NCAPD3P42695 1498 aa19.09■□□□□ 0.65
LINC00562-201ENST00000566385 HMGXB3Q12766 1538 aa19.02■□□□□ 0.64
LINC00562-201ENST00000566385 CC2D2AQ9P2K1 1620 aa19.02■□□□□ 0.64
LINC00562-201ENST00000566385 TRIM41Q8WV44 630 aa19.01■□□□□ 0.63
LINC00562-201ENST00000566385 ABCC8Q09428 1581 aa18.93■□□□□ 0.62
LINC00562-201ENST00000566385 LOC105371045A0A1W2PR82 267 aa18.8■□□□□ 0.6
LINC00562-201ENST00000566385 FAM9AQ8IZU1 332 aaPredicted RBP18.79■□□□□ 0.6
LINC00562-201ENST00000566385 DNAJC5BQ9UF47 199 aa18.75■□□□□ 0.59
LINC00562-201ENST00000566385 CFTRP13569 1480 aa18.71■□□□□ 0.59
LINC00562-201ENST00000566385 WRNQ14191 1432 aaPredicted RBP eCLIP18.7■□□□□ 0.58
LINC00562-201ENST00000566385 SYNJ1O43426 1573 aa18.67■□□□□ 0.58
LINC00562-201ENST00000566385 CADPSQ9ULU8 1353 aa18.63■□□□□ 0.57
LINC00562-201ENST00000566385 EHMT2Q96KQ7 1210 aa18.62■□□□□ 0.57
LINC00562-201ENST00000566385 SOGA1O94964 1423 aa18.59■□□□□ 0.57
LINC00562-201ENST00000566385 NESP48681 1621 aa18.56■□□□□ 0.56
LINC00562-201ENST00000566385 RUSC2Q8N2Y8 1516 aa18.55■□□□□ 0.56
LINC00562-201ENST00000566385 PRDM2Q13029 1718 aa18.55■□□□□ 0.56
LINC00562-201ENST00000566385 TOP2BQ02880 1626 aa18.52■□□□□ 0.55
LINC00562-201ENST00000566385 CUX1P39880 1505 aa18.5■□□□□ 0.55
LINC00562-201ENST00000566385 BIVM-ERCC5R4GMW8 1640 aa18.48■□□□□ 0.55
LINC00562-201ENST00000566385 FANCD2Q9BXW9 1451 aa18.44■□□□□ 0.54
LINC00562-201ENST00000566385 LAMC3Q9Y6N6 1575 aa18.4■□□□□ 0.54
LINC00562-201ENST00000566385 CSRNP3Q8WYN3 585 aa18.4■□□□□ 0.54
LINC00562-201ENST00000566385 EEA1Q15075 1411 aa18.36■□□□□ 0.53
LINC00562-201ENST00000566385 CEP164Q9UPV0 1460 aa18.29■□□□□ 0.52
LINC00562-201ENST00000566385 FGD5Q6ZNL6 1462 aa18.28■□□□□ 0.52
LINC00562-201ENST00000566385 KIF21AQ7Z4S6 1674 aa18.27■□□□□ 0.52
LINC00562-201ENST00000566385 PDS5BQ9NTI5 1447 aa18.27■□□□□ 0.51
LINC00562-201ENST00000566385 TOPBP1Q92547 1522 aa18.25■□□□□ 0.51
LINC00562-201ENST00000566385 DNMBPQ6XZF7 1577 aa18.24■□□□□ 0.51
LINC00562-201ENST00000566385 URB2Q14146 1524 aaKnown RBP18.24■□□□□ 0.51
LINC00562-201ENST00000566385 UBTFP17480 764 aaKnown RBP18.21■□□□□ 0.51
LINC00562-201ENST00000566385 KIF27Q86VH2 1401 aa18.19■□□□□ 0.5
LINC00562-201ENST00000566385 POLA1P09884 1462 aaPredicted RBP18.19■□□□□ 0.5
LINC00562-201ENST00000566385 GOLGA3Q08378 1498 aa18.19■□□□□ 0.5
LINC00562-201ENST00000566385 RAD54L2Q9Y4B4 1467 aa18.19■□□□□ 0.5
LINC00562-201ENST00000566385 CUX2O14529 1486 aa18.18■□□□□ 0.5
LINC00562-201ENST00000566385 RAPGEF2Q9Y4G8 1499 aa18.18■□□□□ 0.5
LINC00562-201ENST00000566385 KIF21BO75037 1637 aa18.17■□□□□ 0.5
LINC00562-201ENST00000566385 TNIKQ9UKE5 1360 aa18.16■□□□□ 0.5
LINC00562-201ENST00000566385 CEP162Q5TB80 1403 aa18.11■□□□□ 0.49
LINC00562-201ENST00000566385 PRXQ9BXM0 1461 aa18.11■□□□□ 0.49
LINC00562-201ENST00000566385 IGF1RP08069 1367 aa18.09■□□□□ 0.49
LINC00562-201ENST00000566385 ABCA10Q8WWZ4 1543 aa18.07■□□□□ 0.48
LINC00562-201ENST00000566385 MRC2Q9UBG0 1479 aa18.03■□□□□ 0.48
LINC00562-201ENST00000566385 RANGAP1P46060 587 aaPredicted RBP18.03■□□□□ 0.48
LINC00562-201ENST00000566385 ERICH3Q5RHP9 1530 aa18.02■□□□□ 0.48
LINC00562-201ENST00000566385 TDRD9Q8NDG6 1382 aaKnown RBP18.01■□□□□ 0.47
LINC00562-201ENST00000566385 WDR97A6NE52 1622 aa18.01■□□□□ 0.47
LINC00562-201ENST00000566385 ERCC6Q03468 1493 aa17.99■□□□□ 0.47
LINC00562-201ENST00000566385 CARMIL1Q5VZK9 1371 aa17.98■□□□□ 0.47
LINC00562-201ENST00000566385 PCGF6Q9BYE7 350 aa17.98■□□□□ 0.47
LINC00562-201ENST00000566385 PPARGC1BQ86YN6 1023 aaKnown RBP17.97■□□□□ 0.47
LINC00562-201ENST00000566385 TARBP1Q13395 1621 aaKnown RBP17.97■□□□□ 0.47
LINC00562-201ENST00000566385 CLIP1P30622 1438 aa17.94■□□□□ 0.46
LINC00562-201ENST00000566385 WDR62O43379 1518 aa17.94■□□□□ 0.46
LINC00562-201ENST00000566385 ABCA5Q8WWZ7 1642 aa17.93■□□□□ 0.46
LINC00562-201ENST00000566385 GAPVD1Q14C86 1478 aa17.91■□□□□ 0.46
LINC00562-201ENST00000566385 THOC2Q8NI27 1593 aaKnown RBP17.9■□□□□ 0.46
LINC00562-201ENST00000566385 AQRO60306 1485 aaKnown RBP eCLIP17.88■□□□□ 0.45
LINC00562-201ENST00000566385 ZNF608Q9ULD9 1512 aaPredicted RBP17.85■□□□□ 0.45
LINC00562-201ENST00000566385 TRIM26Q12899 539 aaPredicted RBP17.84■□□□□ 0.45
LINC00562-201ENST00000566385 CUL7Q14999 1698 aa17.83■□□□□ 0.44
LINC00562-201ENST00000566385 IFT140Q96RY7 1462 aa17.81■□□□□ 0.44
LINC00562-201ENST00000566385 TTBK1Q5TCY1 1321 aaPredicted RBP17.81■□□□□ 0.44
LINC00562-201ENST00000566385 PBRM1Q86U86 1689 aa17.79■□□□□ 0.44
LINC00562-201ENST00000566385 ARAP1Q96P48 1450 aa17.78■□□□□ 0.44
LINC00562-201ENST00000566385 VPS8Q8N3P4 1428 aa17.77■□□□□ 0.44
LINC00562-201ENST00000566385 ARHGAP35Q9NRY4 1499 aa17.76■□□□□ 0.43
LINC00562-201ENST00000566385 EIF4G3O43432 1585 aaKnown RBP17.72■□□□□ 0.43
LINC00562-201ENST00000566385 GRIN2BQ13224 1484 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms