RNA–Protein interactions for RNA: ENST00000566371.5

SPG7-214, Transcript of SPG7, paraplegin matrix AAA peptidase subunit, humanhuman

TSL 3

Gene SPG7, Length 581 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG7-214ENST00000566371 NISCHQ9Y2I1 1504 aa53.04■■■■■ 6.08
SPG7-214ENST00000566371 CCDC180Q9P1Z9 1646 aa47.34■■■■■ 5.17
SPG7-214ENST00000566371 ABCC9O60706 1549 aa46.44■■■■■ 5.03
SPG7-214ENST00000566371 RB1CC1Q8TDY2 1594 aa44.65■■■■■ 4.74
SPG7-214ENST00000566371 NACADO15069 1562 aa44.55■■■■■ 4.72
SPG7-214ENST00000566371 DCAF8L2P0C7V8 631 aa44.28■■■■■ 4.68
SPG7-214ENST00000566371 MYO15BQ96JP2 1530 aa44.24■■■■■ 4.67
SPG7-214ENST00000566371 ZCCHC6Q5VYS8 1495 aaKnown RBP44.15■■■■■ 4.66
SPG7-214ENST00000566371 DCAF1Q9Y4B6 1507 aa43.94■■■■■ 4.62
SPG7-214ENST00000566371 UNC13AQ9UPW8 1703 aa43.61■■■■■ 4.57
SPG7-214ENST00000566371 PABPN1Q86U42 306 aaKnown RBP eCLIP43.31■■■■■ 4.52
SPG7-214ENST00000566371 BICRAQ9NZM4 1560 aa43.29■■■■■ 4.52
SPG7-214ENST00000566371 SCRIBQ14160 1630 aa43.08■■■■■ 4.49
SPG7-214ENST00000566371 SHROOM4Q9ULL8 1493 aa42.91■■■■■ 4.46
SPG7-214ENST00000566371 DNAJC5BQ9UF47 199 aa42.83■■■■■ 4.45
SPG7-214ENST00000566371 EIF4G1Q04637 1599 aaKnown RBP42.17■■■■■ 4.34
SPG7-214ENST00000566371 CC2D2AQ9P2K1 1620 aa42.05■■■■■ 4.32
SPG7-214ENST00000566371 CECR2Q9BXF3 1484 aa41.8■■■■■ 4.28
SPG7-214ENST00000566371 SMARCA4P51532 1647 aa41.22■■■■■ 4.19
SPG7-214ENST00000566371 BAZ1AQ9NRL2 1556 aaPredicted RBP41.14■■■■■ 4.18
SPG7-214ENST00000566371 NCAPD3P42695 1498 aa41.09■■■■■ 4.17
SPG7-214ENST00000566371 ATAD2BQ9ULI0 1458 aa41.04■■■■■ 4.16
SPG7-214ENST00000566371 SMARCA2P51531 1590 aa41.03■■■■■ 4.16
SPG7-214ENST00000566371 HMGXB3Q12766 1538 aa40.89■■■■■ 4.14
SPG7-214ENST00000566371 PEG3Q9GZU2 1588 aa40.87■■■■■ 4.13
SPG7-214ENST00000566371 MROH2BQ7Z745 1585 aa40.84■■■■■ 4.13
SPG7-214ENST00000566371 BAZ1BQ9UIG0 1483 aaKnown RBP40.7■■■■■ 4.11
SPG7-214ENST00000566371 WIZO95785 1651 aa40.38■■■■■ 4.05
SPG7-214ENST00000566371 RSF1Q96T23 1441 aaPredicted RBP40.29■■■■■ 4.04
SPG7-214ENST00000566371 NESP48681 1621 aa40.12■■■■■ 4.01
SPG7-214ENST00000566371 ERCC6Q03468 1493 aa40.08■■■■■ 4.01
SPG7-214ENST00000566371 LAMC3Q9Y6N6 1575 aa40.06■■■■■ 4
SPG7-214ENST00000566371 TOP2AP11388 1531 aaKnown RBP39.98■■■■□ 3.99
SPG7-214ENST00000566371 CADPSQ9ULU8 1353 aa39.84■■■■□ 3.97
SPG7-214ENST00000566371 CUX2O14529 1486 aa39.81■■■■□ 3.96
SPG7-214ENST00000566371 PDS5BQ9NTI5 1447 aa39.78■■■■□ 3.96
SPG7-214ENST00000566371 KIF21AQ7Z4S6 1674 aa39.68■■■■□ 3.94
SPG7-214ENST00000566371 THOC2Q8NI27 1593 aaKnown RBP39.63■■■■□ 3.94
SPG7-214ENST00000566371 CFTRP13569 1480 aa39.58■■■■□ 3.93
SPG7-214ENST00000566371 CCDC88BA6NC98 1476 aa39.48■■■■□ 3.91
SPG7-214ENST00000566371 FANCD2Q9BXW9 1451 aa39.39■■■■□ 3.9
SPG7-214ENST00000566371 MRC2Q9UBG0 1479 aa39.38■■■■□ 3.9
SPG7-214ENST00000566371 CEP164Q9UPV0 1460 aa39.37■■■■□ 3.89
SPG7-214ENST00000566371 PRDM2Q13029 1718 aa39.3■■■■□ 3.88
SPG7-214ENST00000566371 WDR62O43379 1518 aa39.29■■■■□ 3.88
SPG7-214ENST00000566371 URB2Q14146 1524 aaKnown RBP39.01■■■■□ 3.84
SPG7-214ENST00000566371 SUPT5HO00267 1087 aaKnown RBP38.96■■■■□ 3.83
SPG7-214ENST00000566371 DNAJC5Q9H3Z4 198 aa38.83■■■■□ 3.81
SPG7-214ENST00000566371 ABCC8Q09428 1581 aa38.76■■■■□ 3.8
SPG7-214ENST00000566371 TOPBP1Q92547 1522 aa38.73■■■■□ 3.79
SPG7-214ENST00000566371 DNMBPQ6XZF7 1577 aa38.7■■■■□ 3.79
SPG7-214ENST00000566371 IFT140Q96RY7 1462 aa38.57■■■■□ 3.76
SPG7-214ENST00000566371 POLA1P09884 1462 aaPredicted RBP38.39■■■■□ 3.74
SPG7-214ENST00000566371 ZNF608Q9ULD9 1512 aaPredicted RBP38.38■■■■□ 3.73
SPG7-214ENST00000566371 TARBP1Q13395 1621 aaKnown RBP38.36■■■■□ 3.73
SPG7-214ENST00000566371 CUX1P39880 1505 aa38.34■■■■□ 3.73
SPG7-214ENST00000566371 EIF4G3O43432 1585 aaKnown RBP38.26■■■■□ 3.72
SPG7-214ENST00000566371 FGD5Q6ZNL6 1462 aa38.25■■■■□ 3.71
SPG7-214ENST00000566371 SOGA1O94964 1423 aa38.21■■■■□ 3.71
SPG7-214ENST00000566371 RAD54L2Q9Y4B4 1467 aa38.18■■■■□ 3.7
SPG7-214ENST00000566371 AQRO60306 1485 aaKnown RBP eCLIP38.12■■■■□ 3.694e-6■■■□□ 18.7
SPG7-214ENST00000566371 WDR97A6NE52 1622 aa38.1■■■■□ 3.69
SPG7-214ENST00000566371 OSCARQ8IYS5 282 aa38.05■■■■□ 3.68
SPG7-214ENST00000566371 TDRD9Q8NDG6 1382 aaKnown RBP38■■■■□ 3.67
SPG7-214ENST00000566371 WRNQ14191 1432 aaPredicted RBP eCLIP37.99■■■■□ 3.67
SPG7-214ENST00000566371 TOP2BQ02880 1626 aa37.98■■■■□ 3.67
SPG7-214ENST00000566371 BIVM-ERCC5R4GMW8 1640 aa37.98■■■■□ 3.67
SPG7-214ENST00000566371 SYNJ1O43426 1573 aa37.92■■■■□ 3.66
SPG7-214ENST00000566371 ABCA10Q8WWZ4 1543 aa37.9■■■■□ 3.66
SPG7-214ENST00000566371 GRIN2BQ13224 1484 aa37.82■■■■□ 3.64
SPG7-214ENST00000566371 CHD1O14646 1710 aa37.81■■■■□ 3.64
SPG7-214ENST00000566371 SNAPC4Q5SXM2 1469 aa37.78■■■■□ 3.64
SPG7-214ENST00000566371 ABCA5Q8WWZ7 1642 aa37.78■■■■□ 3.64
SPG7-214ENST00000566371 GAPVD1Q14C86 1478 aa37.77■■■■□ 3.64
SPG7-214ENST00000566371 MAGI1Q96QZ7 1491 aaPredicted RBP37.77■■■■□ 3.64
SPG7-214ENST00000566371 PBRM1Q86U86 1689 aa37.73■■■■□ 3.63
SPG7-214ENST00000566371 FBLN2P98095 1184 aa37.67■■■■□ 3.62
SPG7-214ENST00000566371 SYNJ2O15056 1496 aa37.62■■■■□ 3.61
SPG7-214ENST00000566371 CHMP7Q8WUX9 453 aaPredicted RBP37.56■■■■□ 3.6
SPG7-214ENST00000566371 RIMBP3CA6NJZ7 1639 aa37.49■■■■□ 3.59
SPG7-214ENST00000566371 RIMBP3BA6NNM3 1639 aa37.49■■■■□ 3.59
SPG7-214ENST00000566371 RIMBP3Q9UFD9 1639 aa37.49■■■■□ 3.59
SPG7-214ENST00000566371 ARHGEF11O15085 1522 aa37.46■■■■□ 3.59
SPG7-214ENST00000566371 ERICH3Q5RHP9 1530 aa37.46■■■■□ 3.59
SPG7-214ENST00000566371 CLASP1Q7Z460 1538 aa37.43■■■■□ 3.58
SPG7-214ENST00000566371 ADAMTS12P58397 1594 aa37.42■■■■□ 3.58
SPG7-214ENST00000566371 TRIM41Q8WV44 630 aa37.37■■■■□ 3.57
SPG7-214ENST00000566371 FHAD1B1AJZ9 1412 aa37.34■■■■□ 3.57
SPG7-214ENST00000566371 GRIN2AQ12879 1464 aa37.33■■■■□ 3.57
SPG7-214ENST00000566371 KIF27Q86VH2 1401 aa37.23■■■■□ 3.55
SPG7-214ENST00000566371 NUP160Q12769 1436 aa37.19■■■■□ 3.54
SPG7-214ENST00000566371 CEP170Q5SW79 1584 aa37.15■■■■□ 3.54
SPG7-214ENST00000566371 ARAP1Q96P48 1450 aa37.13■■■■□ 3.53
SPG7-214ENST00000566371 IGF1RP08069 1367 aa37.09■■■■□ 3.53
SPG7-214ENST00000566371 CUL7Q14999 1698 aa37.07■■■■□ 3.52
SPG7-214ENST00000566371 CYB5RLQ6IPT4 315 aa37.06■■■■□ 3.52
SPG7-214ENST00000566371 SHROOM2Q13796 1616 aa36.97■■■■□ 3.51
SPG7-214ENST00000566371 RUSC2Q8N2Y8 1516 aa36.9■■■■□ 3.5
SPG7-214ENST00000566371 CARMIL1Q5VZK9 1371 aa36.86■■■■□ 3.49
SPG7-214ENST00000566371 ERCC6L2Q5T890 1561 aa36.83■■■■□ 3.49
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms