RNA–Protein interactions for RNA: ENST00000566230.5

COMMD4-214, Transcript of COMM domain containing 4, humanhuman

TSL 3

Gene COMMD4, Length 490 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-214ENST00000566230 NISCHQ9Y2I1 1504 aa34.03■■■■□ 3.04
COMMD4-214ENST00000566230 ABCC9O60706 1549 aa30.93■■■□□ 2.54
COMMD4-214ENST00000566230 CCDC180Q9P1Z9 1646 aa30.65■■■□□ 2.5
COMMD4-214ENST00000566230 DNAJC5BQ9UF47 199 aa29.32■■■□□ 2.28
COMMD4-214ENST00000566230 RB1CC1Q8TDY2 1594 aa29.29■■■□□ 2.28
COMMD4-214ENST00000566230 NACADO15069 1562 aa29.02■■■□□ 2.24
COMMD4-214ENST00000566230 DCAF8L2P0C7V8 631 aa28.82■■■□□ 2.2
COMMD4-214ENST00000566230 PABPN1Q86U42 306 aaKnown RBP eCLIP28.75■■■□□ 2.19
COMMD4-214ENST00000566230 UNC13AQ9UPW8 1703 aa28.72■■■□□ 2.19
COMMD4-214ENST00000566230 MYO15BQ96JP2 1530 aa28.53■■■□□ 2.16
COMMD4-214ENST00000566230 BICRAQ9NZM4 1560 aa28.51■■■□□ 2.15
COMMD4-214ENST00000566230 ZCCHC6Q5VYS8 1495 aaKnown RBP28.13■■■□□ 2.09
COMMD4-214ENST00000566230 DCAF1Q9Y4B6 1507 aa28.08■■■□□ 2.08
COMMD4-214ENST00000566230 SHROOM4Q9ULL8 1493 aa28■■■□□ 2.07
COMMD4-214ENST00000566230 CC2D2AQ9P2K1 1620 aa27.92■■■□□ 2.06
COMMD4-214ENST00000566230 SCRIBQ14160 1630 aa27.91■■■□□ 2.06
COMMD4-214ENST00000566230 CECR2Q9BXF3 1484 aa27.87■■■□□ 2.05
COMMD4-214ENST00000566230 EIF4G1Q04637 1599 aaKnown RBP27.78■■■□□ 2.04
COMMD4-214ENST00000566230 DNAJC5Q9H3Z4 198 aa27.08■■□□□ 1.93
COMMD4-214ENST00000566230 NCAPD3P42695 1498 aa26.82■■□□□ 1.88
COMMD4-214ENST00000566230 CUX2O14529 1486 aa26.73■■□□□ 1.87
COMMD4-214ENST00000566230 ATAD2BQ9ULI0 1458 aa26.7■■□□□ 1.87
COMMD4-214ENST00000566230 ERCC6Q03468 1493 aa26.67■■□□□ 1.86
COMMD4-214ENST00000566230 SMARCA4P51532 1647 aa26.61■■□□□ 1.85
COMMD4-214ENST00000566230 SMARCA2P51531 1590 aa26.58■■□□□ 1.85
COMMD4-214ENST00000566230 HMGXB3Q12766 1538 aa26.57■■□□□ 1.84
COMMD4-214ENST00000566230 NESP48681 1621 aa26.51■■□□□ 1.83
COMMD4-214ENST00000566230 BAZ1AQ9NRL2 1556 aaPredicted RBP26.41■■□□□ 1.82
COMMD4-214ENST00000566230 BAZ1BQ9UIG0 1483 aaKnown RBP26.4■■□□□ 1.82
COMMD4-214ENST00000566230 PEG3Q9GZU2 1588 aa26.35■■□□□ 1.81
COMMD4-214ENST00000566230 THOC2Q8NI27 1593 aaKnown RBP26.28■■□□□ 1.8
COMMD4-214ENST00000566230 MROH2BQ7Z745 1585 aa26.24■■□□□ 1.79
COMMD4-214ENST00000566230 LAMC3Q9Y6N6 1575 aa26.24■■□□□ 1.79
COMMD4-214ENST00000566230 KIF21AQ7Z4S6 1674 aa26.16■■□□□ 1.78
COMMD4-214ENST00000566230 PDS5BQ9NTI5 1447 aa26.07■■□□□ 1.76
COMMD4-214ENST00000566230 CADPSQ9ULU8 1353 aa25.98■■□□□ 1.75
COMMD4-214ENST00000566230 WIZO95785 1651 aa25.91■■□□□ 1.74
COMMD4-214ENST00000566230 MRC2Q9UBG0 1479 aa25.89■■□□□ 1.73
COMMD4-214ENST00000566230 WDR62O43379 1518 aa25.84■■□□□ 1.73
COMMD4-214ENST00000566230 TRIM41Q8WV44 630 aa25.74■■□□□ 1.71
COMMD4-214ENST00000566230 CEP164Q9UPV0 1460 aa25.72■■□□□ 1.71
COMMD4-214ENST00000566230 FANCD2Q9BXW9 1451 aa25.68■■□□□ 1.7
COMMD4-214ENST00000566230 CFTRP13569 1480 aa25.63■■□□□ 1.69
COMMD4-214ENST00000566230 RSF1Q96T23 1441 aaPredicted RBP25.59■■□□□ 1.69
COMMD4-214ENST00000566230 TOP2AP11388 1531 aaKnown RBP25.53■■□□□ 1.68
COMMD4-214ENST00000566230 URB2Q14146 1524 aaKnown RBP25.52■■□□□ 1.68
COMMD4-214ENST00000566230 OSCARQ8IYS5 282 aa25.48■■□□□ 1.67
COMMD4-214ENST00000566230 PRDM2Q13029 1718 aa25.37■■□□□ 1.65
COMMD4-214ENST00000566230 CCDC88BA6NC98 1476 aa25.28■■□□□ 1.64
COMMD4-214ENST00000566230 ZNF608Q9ULD9 1512 aaPredicted RBP25.25■■□□□ 1.63
COMMD4-214ENST00000566230 IFT140Q96RY7 1462 aa25.22■■□□□ 1.63
COMMD4-214ENST00000566230 RIMBP3CA6NJZ7 1639 aa25.2■■□□□ 1.62
COMMD4-214ENST00000566230 RIMBP3BA6NNM3 1639 aa25.2■■□□□ 1.62
COMMD4-214ENST00000566230 RIMBP3Q9UFD9 1639 aa25.2■■□□□ 1.62
COMMD4-214ENST00000566230 TOPBP1Q92547 1522 aa25.18■■□□□ 1.62
COMMD4-214ENST00000566230 ARHGEF11O15085 1522 aa25.07■■□□□ 1.6
COMMD4-214ENST00000566230 EIF4G3O43432 1585 aaKnown RBP25.07■■□□□ 1.6
COMMD4-214ENST00000566230 ABCC8Q09428 1581 aa25.07■■□□□ 1.6
COMMD4-214ENST00000566230 DNMBPQ6XZF7 1577 aa25.05■■□□□ 1.6
COMMD4-214ENST00000566230 TARBP1Q13395 1621 aaKnown RBP25■■□□□ 1.59
COMMD4-214ENST00000566230 AQRO60306 1485 aaKnown RBP eCLIP24.98■■□□□ 1.59
COMMD4-214ENST00000566230 CHD1O14646 1710 aa24.97■■□□□ 1.59
COMMD4-214ENST00000566230 CYB5RLQ6IPT4 315 aa24.91■■□□□ 1.58
COMMD4-214ENST00000566230 POLA1P09884 1462 aaPredicted RBP24.89■■□□□ 1.58
COMMD4-214ENST00000566230 FBLN2P98095 1184 aa24.84■■□□□ 1.57
COMMD4-214ENST00000566230 RAD54L2Q9Y4B4 1467 aa24.83■■□□□ 1.57
COMMD4-214ENST00000566230 ARAP1Q96P48 1450 aa24.83■■□□□ 1.56
COMMD4-214ENST00000566230 TDRD9Q8NDG6 1382 aaKnown RBP24.79■■□□□ 1.56
COMMD4-214ENST00000566230 SOGA1O94964 1423 aa24.78■■□□□ 1.56
COMMD4-214ENST00000566230 FGD5Q6ZNL6 1462 aa24.7■■□□□ 1.55
COMMD4-214ENST00000566230 TRHP20396 242 aaPredicted RBP24.7■■□□□ 1.54
COMMD4-214ENST00000566230 SNAPC4Q5SXM2 1469 aa24.69■■□□□ 1.54
COMMD4-214ENST00000566230 WDR97A6NE52 1622 aa24.66■■□□□ 1.54
COMMD4-214ENST00000566230 CUX1P39880 1505 aa24.66■■□□□ 1.54
COMMD4-214ENST00000566230 CLASP1Q7Z460 1538 aa24.66■■□□□ 1.54
COMMD4-214ENST00000566230 CHMP7Q8WUX9 453 aaPredicted RBP24.61■■□□□ 1.53
COMMD4-214ENST00000566230 MAGI1Q96QZ7 1491 aaPredicted RBP24.6■■□□□ 1.53
COMMD4-214ENST00000566230 GRIN2BQ13224 1484 aa24.58■■□□□ 1.53
COMMD4-214ENST00000566230 SYNJ1O43426 1573 aa24.58■■□□□ 1.52
COMMD4-214ENST00000566230 SYNJ2O15056 1496 aa24.53■■□□□ 1.52
COMMD4-214ENST00000566230 PBRM1Q86U86 1689 aa24.5■■□□□ 1.51
COMMD4-214ENST00000566230 GAPVD1Q14C86 1478 aa24.46■■□□□ 1.51
COMMD4-214ENST00000566230 ABCA10Q8WWZ4 1543 aa24.41■■□□□ 1.5
COMMD4-214ENST00000566230 ABCA5Q8WWZ7 1642 aa24.4■■□□□ 1.5
COMMD4-214ENST00000566230 ERCC6L2Q5T890 1561 aa24.29■■□□□ 1.48
COMMD4-214ENST00000566230 GRIN2AQ12879 1464 aa24.27■■□□□ 1.48
COMMD4-214ENST00000566230 SUPT5HO00267 1087 aaKnown RBP24.24■■□□□ 1.47
COMMD4-214ENST00000566230 WRNQ14191 1432 aaPredicted RBP eCLIP24.23■■□□□ 1.47
COMMD4-214ENST00000566230 ADAMTS12P58397 1594 aa24.23■■□□□ 1.47
COMMD4-214ENST00000566230 CEP170Q5SW79 1584 aa24.22■■□□□ 1.47
COMMD4-214ENST00000566230 NUP160Q12769 1436 aa24.21■■□□□ 1.47
COMMD4-214ENST00000566230 BIVM-ERCC5R4GMW8 1640 aa24.19■■□□□ 1.46
COMMD4-214ENST00000566230 TOP2BQ02880 1626 aa24.17■■□□□ 1.46
COMMD4-214ENST00000566230 SHROOM2Q13796 1616 aa24.15■■□□□ 1.46
COMMD4-214ENST00000566230 AEBP2Q6ZN18 517 aaPredicted RBP24.15■■□□□ 1.46
COMMD4-214ENST00000566230 FHAD1B1AJZ9 1412 aa24.14■■□□□ 1.45
COMMD4-214ENST00000566230 ERICH3Q5RHP9 1530 aa24.08■■□□□ 1.45
COMMD4-214ENST00000566230 KIF13AQ9H1H9 1805 aa24.01■■□□□ 1.43
COMMD4-214ENST00000566230 PRG4Q92954 1404 aaPredicted RBP24■■□□□ 1.43
COMMD4-214ENST00000566230 JPH4Q96JJ6 628 aa23.97■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 197.7 ms