RNA–Protein interactions for RNA: ENST00000564846.1

CLN6-205, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 1,762 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-205ENST00000564846 NISCHQ9Y2I1 1504 aa44.19■■■■■ 4.66
CLN6-205ENST00000564846 CCDC180Q9P1Z9 1646 aa38.5■■■■□ 3.75
CLN6-205ENST00000564846 ZCCHC6Q5VYS8 1495 aaKnown RBP37.13■■■■□ 3.53
CLN6-205ENST00000564846 DCAF1Q9Y4B6 1507 aa36.58■■■■□ 3.45
CLN6-205ENST00000564846 DCAF8L2P0C7V8 631 aa36.45■■■■□ 3.43
CLN6-205ENST00000564846 ABCC9O60706 1549 aa36.33■■■■□ 3.41
CLN6-205ENST00000564846 MYO15BQ96JP2 1530 aa36.15■■■■□ 3.38
CLN6-205ENST00000564846 SHROOM4Q9ULL8 1493 aa36.02■■■■□ 3.36
CLN6-205ENST00000564846 NACADO15069 1562 aa35.87■■■■□ 3.33
CLN6-205ENST00000564846 RB1CC1Q8TDY2 1594 aa35.54■■■■□ 3.28
CLN6-205ENST00000564846 SCRIBQ14160 1630 aa35.37■■■■□ 3.25
CLN6-205ENST00000564846 UNC13AQ9UPW8 1703 aa34.73■■■■□ 3.15
CLN6-205ENST00000564846 SUPT5HO00267 1087 aaKnown RBP34.72■■■■□ 3.15
CLN6-205ENST00000564846 BICRAQ9NZM4 1560 aa34.43■■■■□ 3.1
CLN6-205ENST00000564846 RSF1Q96T23 1441 aaPredicted RBP34.31■■■■□ 3.08
CLN6-205ENST00000564846 CECR2Q9BXF3 1484 aa34.3■■■■□ 3.08
CLN6-205ENST00000564846 PABPN1Q86U42 306 aaKnown RBP eCLIP34.28■■■■□ 3.08
CLN6-205ENST00000564846 BAZ1AQ9NRL2 1556 aaPredicted RBP34.13■■■■□ 3.05
CLN6-205ENST00000564846 MROH2BQ7Z745 1585 aa34.12■■■■□ 3.05
CLN6-205ENST00000564846 SMARCA4P51532 1647 aa33.94■■■■□ 3.02
CLN6-205ENST00000564846 WIZO95785 1651 aa33.81■■■■□ 3
CLN6-205ENST00000564846 PEG3Q9GZU2 1588 aa33.56■■■□□ 2.96
CLN6-205ENST00000564846 TOP2AP11388 1531 aaKnown RBP33.52■■■□□ 2.96
CLN6-205ENST00000564846 EIF4G1Q04637 1599 aaKnown RBP33.41■■■□□ 2.94
CLN6-205ENST00000564846 ATAD2BQ9ULI0 1458 aa33.39■■■□□ 2.94
CLN6-205ENST00000564846 SMARCA2P51531 1590 aa33.38■■■□□ 2.93
CLN6-205ENST00000564846 CHIC1Q5VXU3 224 aa33.28■■■□□ 2.92
CLN6-205ENST00000564846 BAZ1BQ9UIG0 1483 aaKnown RBP33.21■■■□□ 2.91
CLN6-205ENST00000564846 CCDC88BA6NC98 1476 aa33.16■■■□□ 2.9
CLN6-205ENST00000564846 NCAPD3P42695 1498 aa33.12■■■□□ 2.89
CLN6-205ENST00000564846 HMGXB3Q12766 1538 aa33.06■■■□□ 2.88
CLN6-205ENST00000564846 CC2D2AQ9P2K1 1620 aa32.88■■■□□ 2.85
CLN6-205ENST00000564846 TRIM41Q8WV44 630 aa32.68■■■□□ 2.82
CLN6-205ENST00000564846 ABCC8Q09428 1581 aa32.44■■■□□ 2.78
CLN6-205ENST00000564846 CFTRP13569 1480 aa32.39■■■□□ 2.78
CLN6-205ENST00000564846 WRNQ14191 1432 aaPredicted RBP eCLIP32.3■■■□□ 2.761e-9■■■■■ 46
CLN6-205ENST00000564846 CADPSQ9ULU8 1353 aa32.27■■■□□ 2.76
CLN6-205ENST00000564846 PRDM2Q13029 1718 aa32.16■■■□□ 2.74
CLN6-205ENST00000564846 SYNJ1O43426 1573 aa32.12■■■□□ 2.73
CLN6-205ENST00000564846 FAM9AQ8IZU1 332 aaPredicted RBP32.03■■■□□ 2.72
CLN6-205ENST00000564846 TOP2BQ02880 1626 aa32.01■■■□□ 2.72
CLN6-205ENST00000564846 DNAJC5BQ9UF47 199 aa31.99■■■□□ 2.71
CLN6-205ENST00000564846 LOC105371045A0A1W2PR82 267 aa31.97■■■□□ 2.71
CLN6-205ENST00000564846 LAMC3Q9Y6N6 1575 aa31.97■■■□□ 2.71
CLN6-205ENST00000564846 BIVM-ERCC5R4GMW8 1640 aa31.97■■■□□ 2.71
CLN6-205ENST00000564846 EEA1Q15075 1411 aa31.91■■■□□ 2.7
CLN6-205ENST00000564846 NESP48681 1621 aa31.91■■■□□ 2.7
CLN6-205ENST00000564846 CUX1P39880 1505 aa31.9■■■□□ 2.7
CLN6-205ENST00000564846 FANCD2Q9BXW9 1451 aa31.89■■■□□ 2.7
CLN6-205ENST00000564846 SOGA1O94964 1423 aa31.87■■■□□ 2.69
CLN6-205ENST00000564846 PDS5BQ9NTI5 1447 aa31.74■■■□□ 2.67
CLN6-205ENST00000564846 RUSC2Q8N2Y8 1516 aa31.73■■■□□ 2.67
CLN6-205ENST00000564846 CSRNP3Q8WYN3 585 aa31.7■■■□□ 2.67
CLN6-205ENST00000564846 CEP164Q9UPV0 1460 aa31.69■■■□□ 2.66
CLN6-205ENST00000564846 DNMBPQ6XZF7 1577 aa31.62■■■□□ 2.65
CLN6-205ENST00000564846 FGD5Q6ZNL6 1462 aa31.55■■■□□ 2.64
CLN6-205ENST00000564846 TOPBP1Q92547 1522 aa31.54■■■□□ 2.64
CLN6-205ENST00000564846 EHMT2Q96KQ7 1210 aa31.53■■■□□ 2.64
CLN6-205ENST00000564846 KIF27Q86VH2 1401 aa31.5■■■□□ 2.63
CLN6-205ENST00000564846 KIF21AQ7Z4S6 1674 aa31.49■■■□□ 2.63
CLN6-205ENST00000564846 URB2Q14146 1524 aaKnown RBP31.47■■■□□ 2.63
CLN6-205ENST00000564846 KIF21BO75037 1637 aa31.44■■■□□ 2.62
CLN6-205ENST00000564846 GOLGA3Q08378 1498 aa31.43■■■□□ 2.62
CLN6-205ENST00000564846 POLA1P09884 1462 aaPredicted RBP31.4■■■□□ 2.62
CLN6-205ENST00000564846 CUX2O14529 1486 aa31.37■■■□□ 2.61
CLN6-205ENST00000564846 TNIKQ9UKE5 1360 aa31.35■■■□□ 2.61
CLN6-205ENST00000564846 MRC2Q9UBG0 1479 aa31.31■■■□□ 2.6
CLN6-205ENST00000564846 ABCA10Q8WWZ4 1543 aa31.29■■■□□ 2.6
CLN6-205ENST00000564846 UBTFP17480 764 aaKnown RBP31.28■■■□□ 2.6
CLN6-205ENST00000564846 PRXQ9BXM0 1461 aa31.28■■■□□ 2.6
CLN6-205ENST00000564846 RAD54L2Q9Y4B4 1467 aa31.28■■■□□ 2.6
CLN6-205ENST00000564846 RAPGEF2Q9Y4G8 1499 aa31.24■■■□□ 2.59
CLN6-205ENST00000564846 ERICH3Q5RHP9 1530 aa31.23■■■□□ 2.59
CLN6-205ENST00000564846 IGF1RP08069 1367 aa31.19■■■□□ 2.58
CLN6-205ENST00000564846 ERCC6Q03468 1493 aa31.18■■■□□ 2.58
CLN6-205ENST00000564846 CEP162Q5TB80 1403 aa31.16■■■□□ 2.58
CLN6-205ENST00000564846 WDR97A6NE52 1622 aa31.14■■■□□ 2.58
CLN6-205ENST00000564846 WDR62O43379 1518 aa31.14■■■□□ 2.58
CLN6-205ENST00000564846 TARBP1Q13395 1621 aaKnown RBP31.05■■■□□ 2.56
CLN6-205ENST00000564846 CARMIL1Q5VZK9 1371 aa31.04■■■□□ 2.56
CLN6-205ENST00000564846 ABCA5Q8WWZ7 1642 aa31.01■■■□□ 2.55
CLN6-205ENST00000564846 THOC2Q8NI27 1593 aaKnown RBP30.99■■■□□ 2.55
CLN6-205ENST00000564846 TDRD9Q8NDG6 1382 aaKnown RBP30.99■■■□□ 2.55
CLN6-205ENST00000564846 GAPVD1Q14C86 1478 aa30.97■■■□□ 2.55
CLN6-205ENST00000564846 IFT140Q96RY7 1462 aa30.95■■■□□ 2.55
CLN6-205ENST00000564846 CUL7Q14999 1698 aa30.94■■■□□ 2.54
CLN6-205ENST00000564846 CLIP1P30622 1438 aa30.93■■■□□ 2.54
CLN6-205ENST00000564846 AQRO60306 1485 aaKnown RBP eCLIP30.77■■■□□ 2.525e-8■□□□□ 10.1
CLN6-205ENST00000564846 PBRM1Q86U86 1689 aa30.73■■■□□ 2.51
CLN6-205ENST00000564846 GRIN2BQ13224 1484 aa30.73■■■□□ 2.51
CLN6-205ENST00000564846 ZNF608Q9ULD9 1512 aaPredicted RBP30.72■■■□□ 2.51
CLN6-205ENST00000564846 RANGAP1P46060 587 aaPredicted RBP30.7■■■□□ 2.51
CLN6-205ENST00000564846 VPS8Q8N3P4 1428 aa30.67■■■□□ 2.5
CLN6-205ENST00000564846 FHAD1B1AJZ9 1412 aa30.66■■■□□ 2.5
CLN6-205ENST00000564846 TRIM26Q12899 539 aaPredicted RBP30.62■■■□□ 2.49
CLN6-205ENST00000564846 EIF4G3O43432 1585 aaKnown RBP30.62■■■□□ 2.49
CLN6-205ENST00000564846 ADAMTS12P58397 1594 aa30.61■■■□□ 2.49
CLN6-205ENST00000564846 ARAP1Q96P48 1450 aa30.59■■■□□ 2.49
CLN6-205ENST00000564846 ARHGAP35Q9NRY4 1499 aa30.59■■■□□ 2.49
CLN6-205ENST00000564846 PCGF6Q9BYE7 350 aa30.58■■■□□ 2.49
Retrieved 100 of 20,778 RNA–protein pairs in 89.7 ms