RNA–Protein interactions for RNA: ENST00000564664.5

GTF3C1-204, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 5

Gene GTF3C1, Length 933 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-204ENST00000564664 NISCHQ9Y2I1 1504 aa30.2■■■□□ 2.42
GTF3C1-204ENST00000564664 CCDC180Q9P1Z9 1646 aa27.01■■□□□ 1.92
GTF3C1-204ENST00000564664 ABCC9O60706 1549 aa26.85■■□□□ 1.89
GTF3C1-204ENST00000564664 RB1CC1Q8TDY2 1594 aa25.69■■□□□ 1.7
GTF3C1-204ENST00000564664 NACADO15069 1562 aa25.58■■□□□ 1.69
GTF3C1-204ENST00000564664 DCAF8L2P0C7V8 631 aa25.46■■□□□ 1.67
GTF3C1-204ENST00000564664 MYO15BQ96JP2 1530 aa25.32■■□□□ 1.64
GTF3C1-204ENST00000564664 DNAJC5BQ9UF47 199 aa25.11■■□□□ 1.61
GTF3C1-204ENST00000564664 PABPN1Q86U42 306 aaKnown RBP eCLIP25.06■■□□□ 1.6
GTF3C1-204ENST00000564664 ZCCHC6Q5VYS8 1495 aaKnown RBP25.02■■□□□ 1.6
GTF3C1-204ENST00000564664 DCAF1Q9Y4B6 1507 aa25.02■■□□□ 1.6
GTF3C1-204ENST00000564664 UNC13AQ9UPW8 1703 aa24.97■■□□□ 1.59
GTF3C1-204ENST00000564664 BICRAQ9NZM4 1560 aa24.86■■□□□ 1.57
GTF3C1-204ENST00000564664 SHROOM4Q9ULL8 1493 aa24.69■■□□□ 1.54
GTF3C1-204ENST00000564664 SCRIBQ14160 1630 aa24.54■■□□□ 1.52
GTF3C1-204ENST00000564664 CC2D2AQ9P2K1 1620 aa24.27■■□□□ 1.48
GTF3C1-204ENST00000564664 EIF4G1Q04637 1599 aaKnown RBP24.26■■□□□ 1.47
GTF3C1-204ENST00000564664 CECR2Q9BXF3 1484 aa24.23■■□□□ 1.47
GTF3C1-204ENST00000564664 NCAPD3P42695 1498 aa23.63■■□□□ 1.37
GTF3C1-204ENST00000564664 ATAD2BQ9ULI0 1458 aa23.53■■□□□ 1.36
GTF3C1-204ENST00000564664 SMARCA2P51531 1590 aa23.49■■□□□ 1.35
GTF3C1-204ENST00000564664 SMARCA4P51532 1647 aa23.48■■□□□ 1.35
GTF3C1-204ENST00000564664 BAZ1AQ9NRL2 1556 aaPredicted RBP23.44■■□□□ 1.34
GTF3C1-204ENST00000564664 HMGXB3Q12766 1538 aa23.41■■□□□ 1.34
GTF3C1-204ENST00000564664 PEG3Q9GZU2 1588 aa23.31■■□□□ 1.32
GTF3C1-204ENST00000564664 BAZ1BQ9UIG0 1483 aaKnown RBP23.29■■□□□ 1.32
GTF3C1-204ENST00000564664 ERCC6Q03468 1493 aa23.22■■□□□ 1.31
GTF3C1-204ENST00000564664 MROH2BQ7Z745 1585 aa23.22■■□□□ 1.31
GTF3C1-204ENST00000564664 CUX2O14529 1486 aa23.18■■□□□ 1.3
GTF3C1-204ENST00000564664 NESP48681 1621 aa23.08■■□□□ 1.28
GTF3C1-204ENST00000564664 DNAJC5Q9H3Z4 198 aa23.07■■□□□ 1.28
GTF3C1-204ENST00000564664 LAMC3Q9Y6N6 1575 aa23.03■■□□□ 1.28
GTF3C1-204ENST00000564664 PDS5BQ9NTI5 1447 aa22.96■■□□□ 1.27
GTF3C1-204ENST00000564664 CADPSQ9ULU8 1353 aa22.92■■□□□ 1.26
GTF3C1-204ENST00000564664 WIZO95785 1651 aa22.91■■□□□ 1.26
GTF3C1-204ENST00000564664 RSF1Q96T23 1441 aaPredicted RBP22.84■■□□□ 1.25
GTF3C1-204ENST00000564664 THOC2Q8NI27 1593 aaKnown RBP22.81■■□□□ 1.24
GTF3C1-204ENST00000564664 KIF21AQ7Z4S6 1674 aa22.75■■□□□ 1.23
GTF3C1-204ENST00000564664 TOP2AP11388 1531 aaKnown RBP22.69■■□□□ 1.22
GTF3C1-204ENST00000564664 CFTRP13569 1480 aa22.66■■□□□ 1.22
GTF3C1-204ENST00000564664 MRC2Q9UBG0 1479 aa22.66■■□□□ 1.22
GTF3C1-204ENST00000564664 CEP164Q9UPV0 1460 aa22.6■■□□□ 1.21
GTF3C1-204ENST00000564664 FANCD2Q9BXW9 1451 aa22.6■■□□□ 1.21
GTF3C1-204ENST00000564664 WDR62O43379 1518 aa22.59■■□□□ 1.21
GTF3C1-204ENST00000564664 CCDC88BA6NC98 1476 aa22.46■■□□□ 1.19
GTF3C1-204ENST00000564664 URB2Q14146 1524 aaKnown RBP22.36■■□□□ 1.17
GTF3C1-204ENST00000564664 PRDM2Q13029 1718 aa22.34■■□□□ 1.17
GTF3C1-204ENST00000564664 ABCC8Q09428 1581 aa22.25■■□□□ 1.15
GTF3C1-204ENST00000564664 OSCARQ8IYS5 282 aa22.22■■□□□ 1.15
GTF3C1-204ENST00000564664 IFT140Q96RY7 1462 aa22.19■■□□□ 1.14
GTF3C1-204ENST00000564664 TOPBP1Q92547 1522 aa22.17■■□□□ 1.14
GTF3C1-204ENST00000564664 DNMBPQ6XZF7 1577 aa22.1■■□□□ 1.13
GTF3C1-204ENST00000564664 ZNF608Q9ULD9 1512 aaPredicted RBP22.06■■□□□ 1.12
GTF3C1-204ENST00000564664 TRIM41Q8WV44 630 aa22■■□□□ 1.11
GTF3C1-204ENST00000564664 POLA1P09884 1462 aaPredicted RBP21.95■■□□□ 1.1
GTF3C1-204ENST00000564664 TARBP1Q13395 1621 aaKnown RBP21.94■■□□□ 1.1
GTF3C1-204ENST00000564664 SUPT5HO00267 1087 aaKnown RBP21.92■■□□□ 1.1
GTF3C1-204ENST00000564664 AQRO60306 1485 aaKnown RBP eCLIP21.91■■□□□ 1.13e-7■■■■■ 36.6
GTF3C1-204ENST00000564664 SOGA1O94964 1423 aa21.91■■□□□ 1.1
GTF3C1-204ENST00000564664 EIF4G3O43432 1585 aaKnown RBP21.91■■□□□ 1.1
GTF3C1-204ENST00000564664 RAD54L2Q9Y4B4 1467 aa21.84■■□□□ 1.09
GTF3C1-204ENST00000564664 WDR97A6NE52 1622 aa21.82■■□□□ 1.08
GTF3C1-204ENST00000564664 FGD5Q6ZNL6 1462 aa21.82■■□□□ 1.08
GTF3C1-204ENST00000564664 TDRD9Q8NDG6 1382 aaKnown RBP21.81■■□□□ 1.08
GTF3C1-204ENST00000564664 CUX1P39880 1505 aa21.8■■□□□ 1.08
GTF3C1-204ENST00000564664 FBLN2P98095 1184 aa21.78■■□□□ 1.08
GTF3C1-204ENST00000564664 RIMBP3CA6NJZ7 1639 aa21.74■■□□□ 1.07
GTF3C1-204ENST00000564664 RIMBP3BA6NNM3 1639 aa21.74■■□□□ 1.07
GTF3C1-204ENST00000564664 RIMBP3Q9UFD9 1639 aa21.74■■□□□ 1.07
GTF3C1-204ENST00000564664 ARHGEF11O15085 1522 aa21.72■■□□□ 1.07
GTF3C1-204ENST00000564664 CHD1O14646 1710 aa21.7■■□□□ 1.06
GTF3C1-204ENST00000564664 GRIN2BQ13224 1484 aa21.7■■□□□ 1.06
GTF3C1-204ENST00000564664 CHMP7Q8WUX9 453 aaPredicted RBP21.69■■□□□ 1.06
GTF3C1-204ENST00000564664 MAGI1Q96QZ7 1491 aaPredicted RBP21.69■■□□□ 1.06
GTF3C1-204ENST00000564664 SNAPC4Q5SXM2 1469 aa21.66■■□□□ 1.06
GTF3C1-204ENST00000564664 CYB5RLQ6IPT4 315 aa21.63■■□□□ 1.05
GTF3C1-204ENST00000564664 ABCA10Q8WWZ4 1543 aa21.63■■□□□ 1.05
GTF3C1-204ENST00000564664 GAPVD1Q14C86 1478 aa21.63■■□□□ 1.05
GTF3C1-204ENST00000564664 SYNJ2O15056 1496 aa21.6■■□□□ 1.05
GTF3C1-204ENST00000564664 WRNQ14191 1432 aaPredicted RBP eCLIP21.6■■□□□ 1.05
GTF3C1-204ENST00000564664 SYNJ1O43426 1573 aa21.57■■□□□ 1.04
GTF3C1-204ENST00000564664 TOP2BQ02880 1626 aa21.52■■□□□ 1.04
GTF3C1-204ENST00000564664 CLASP1Q7Z460 1538 aa21.52■■□□□ 1.04
GTF3C1-204ENST00000564664 ABCA5Q8WWZ7 1642 aa21.51■■□□□ 1.03
GTF3C1-204ENST00000564664 ARAP1Q96P48 1450 aa21.5■■□□□ 1.03
GTF3C1-204ENST00000564664 PBRM1Q86U86 1689 aa21.5■■□□□ 1.03
GTF3C1-204ENST00000564664 BIVM-ERCC5R4GMW8 1640 aa21.49■■□□□ 1.03
GTF3C1-204ENST00000564664 FHAD1B1AJZ9 1412 aa21.38■■□□□ 1.01
GTF3C1-204ENST00000564664 GRIN2AQ12879 1464 aa21.38■■□□□ 1.01
GTF3C1-204ENST00000564664 ERICH3Q5RHP9 1530 aa21.37■■□□□ 1.01
GTF3C1-204ENST00000564664 ADAMTS12P58397 1594 aa21.33■■□□□ 1.01
GTF3C1-204ENST00000564664 NUP160Q12769 1436 aa21.33■■□□□ 1.01
GTF3C1-204ENST00000564664 TRHP20396 242 aaPredicted RBP21.33■■□□□ 1.01
GTF3C1-204ENST00000564664 CEP170Q5SW79 1584 aa21.24■□□□□ 0.99
GTF3C1-204ENST00000564664 JPH4Q96JJ6 628 aa21.19■□□□□ 0.98
GTF3C1-204ENST00000564664 KIF27Q86VH2 1401 aa21.18■□□□□ 0.98
GTF3C1-204ENST00000564664 SHROOM2Q13796 1616 aa21.18■□□□□ 0.98
GTF3C1-204ENST00000564664 IGF1RP08069 1367 aa21.16■□□□□ 0.98
GTF3C1-204ENST00000564664 ERCC6L2Q5T890 1561 aa21.13■□□□□ 0.97
GTF3C1-204ENST00000564664 PRG4Q92954 1404 aaPredicted RBP21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms