RNA–Protein interactions for RNA: ENST00000564519.1

HERC2-206, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 2, humanhuman

TSL 3

Gene HERC2, Length 323 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC2-206ENST00000564519 NISCHQ9Y2I1 1504 aa31.27■■■□□ 2.6
HERC2-206ENST00000564519 ABCC9O60706 1549 aa27.82■■■□□ 2.04
HERC2-206ENST00000564519 CCDC180Q9P1Z9 1646 aa27.81■■■□□ 2.04
HERC2-206ENST00000564519 RB1CC1Q8TDY2 1594 aa26.38■■□□□ 1.81
HERC2-206ENST00000564519 DCAF8L2P0C7V8 631 aa26.29■■□□□ 1.8
HERC2-206ENST00000564519 NACADO15069 1562 aa26.25■■□□□ 1.79
HERC2-206ENST00000564519 DNAJC5BQ9UF47 199 aa26.17■■□□□ 1.78
HERC2-206ENST00000564519 MYO15BQ96JP2 1530 aa26■■□□□ 1.75
HERC2-206ENST00000564519 ZCCHC6Q5VYS8 1495 aaKnown RBP26■■□□□ 1.75
HERC2-206ENST00000564519 PABPN1Q86U42 306 aaKnown RBP eCLIP25.93■■□□□ 1.74
HERC2-206ENST00000564519 DCAF1Q9Y4B6 1507 aa25.81■■□□□ 1.72
HERC2-206ENST00000564519 UNC13AQ9UPW8 1703 aa25.7■■□□□ 1.7
HERC2-206ENST00000564519 BICRAQ9NZM4 1560 aa25.61■■□□□ 1.69
HERC2-206ENST00000564519 SCRIBQ14160 1630 aa25.45■■□□□ 1.67
HERC2-206ENST00000564519 SHROOM4Q9ULL8 1493 aa25.25■■□□□ 1.63
HERC2-206ENST00000564519 CECR2Q9BXF3 1484 aa25.09■■□□□ 1.61
HERC2-206ENST00000564519 CC2D2AQ9P2K1 1620 aa25.05■■□□□ 1.6
HERC2-206ENST00000564519 EIF4G1Q04637 1599 aaKnown RBP24.97■■□□□ 1.59
HERC2-206ENST00000564519 SMARCA4P51532 1647 aa24.29■■□□□ 1.48
HERC2-206ENST00000564519 NCAPD3P42695 1498 aa24.27■■□□□ 1.48
HERC2-206ENST00000564519 ATAD2BQ9ULI0 1458 aa24.27■■□□□ 1.48
HERC2-206ENST00000564519 DNAJC5Q9H3Z4 198 aa24.22■■□□□ 1.47
HERC2-206ENST00000564519 BAZ1AQ9NRL2 1556 aaPredicted RBP24.21■■□□□ 1.47
HERC2-206ENST00000564519 SMARCA2P51531 1590 aa24.16■■□□□ 1.46
HERC2-206ENST00000564519 MROH2BQ7Z745 1585 aa24.13■■□□□ 1.45
HERC2-206ENST00000564519 ERCC6Q03468 1493 aa24.12■■□□□ 1.45
HERC2-206ENST00000564519 HMGXB3Q12766 1538 aa24.09■■□□□ 1.45
HERC2-206ENST00000564519 PEG3Q9GZU2 1588 aa24.04■■□□□ 1.44
HERC2-206ENST00000564519 CUX2O14529 1486 aa24.04■■□□□ 1.44
HERC2-206ENST00000564519 BAZ1BQ9UIG0 1483 aaKnown RBP24.02■■□□□ 1.44
HERC2-206ENST00000564519 WIZO95785 1651 aa23.82■■□□□ 1.4
HERC2-206ENST00000564519 NESP48681 1621 aa23.81■■□□□ 1.4
HERC2-206ENST00000564519 RSF1Q96T23 1441 aaPredicted RBP23.76■■□□□ 1.39
HERC2-206ENST00000564519 LAMC3Q9Y6N6 1575 aa23.62■■□□□ 1.37
HERC2-206ENST00000564519 PDS5BQ9NTI5 1447 aa23.59■■□□□ 1.37
HERC2-206ENST00000564519 CADPSQ9ULU8 1353 aa23.56■■□□□ 1.36
HERC2-206ENST00000564519 TOP2AP11388 1531 aaKnown RBP23.54■■□□□ 1.36
HERC2-206ENST00000564519 THOC2Q8NI27 1593 aaKnown RBP23.53■■□□□ 1.36
HERC2-206ENST00000564519 KIF21AQ7Z4S6 1674 aa23.44■■□□□ 1.34
HERC2-206ENST00000564519 CFTRP13569 1480 aa23.36■■□□□ 1.33
HERC2-206ENST00000564519 MRC2Q9UBG0 1479 aa23.34■■□□□ 1.33
HERC2-206ENST00000564519 CCDC88BA6NC98 1476 aa23.31■■□□□ 1.32
HERC2-206ENST00000564519 FANCD2Q9BXW9 1451 aa23.29■■□□□ 1.32
HERC2-206ENST00000564519 CEP164Q9UPV0 1460 aa23.26■■□□□ 1.31
HERC2-206ENST00000564519 WDR62O43379 1518 aa23.23■■□□□ 1.31
HERC2-206ENST00000564519 TRIM41Q8WV44 630 aa23.21■■□□□ 1.31
HERC2-206ENST00000564519 URB2Q14146 1524 aaKnown RBP23.09■■□□□ 1.29
HERC2-206ENST00000564519 PRDM2Q13029 1718 aa23.02■■□□□ 1.28
HERC2-206ENST00000564519 SUPT5HO00267 1087 aaKnown RBP23.01■■□□□ 1.27
HERC2-206ENST00000564519 OSCARQ8IYS5 282 aa23.01■■□□□ 1.27
HERC2-206ENST00000564519 TOPBP1Q92547 1522 aa22.89■■□□□ 1.26
HERC2-206ENST00000564519 DNMBPQ6XZF7 1577 aa22.8■■□□□ 1.24
HERC2-206ENST00000564519 ABCC8Q09428 1581 aa22.8■■□□□ 1.24
HERC2-206ENST00000564519 IFT140Q96RY7 1462 aa22.79■■□□□ 1.24
HERC2-206ENST00000564519 ZNF608Q9ULD9 1512 aaPredicted RBP22.77■■□□□ 1.24
HERC2-206ENST00000564519 POLA1P09884 1462 aaPredicted RBP22.69■■□□□ 1.22
HERC2-206ENST00000564519 CUX1P39880 1505 aa22.64■■□□□ 1.21
HERC2-206ENST00000564519 TARBP1Q13395 1621 aaKnown RBP22.64■■□□□ 1.21
HERC2-206ENST00000564519 RAD54L2Q9Y4B4 1467 aa22.63■■□□□ 1.21
HERC2-206ENST00000564519 AQRO60306 1485 aaKnown RBP eCLIP22.6■■□□□ 1.21
HERC2-206ENST00000564519 EIF4G3O43432 1585 aaKnown RBP22.6■■□□□ 1.21
HERC2-206ENST00000564519 FGD5Q6ZNL6 1462 aa22.6■■□□□ 1.21
HERC2-206ENST00000564519 SOGA1O94964 1423 aa22.58■■□□□ 1.21
HERC2-206ENST00000564519 RIMBP3CA6NJZ7 1639 aa22.57■■□□□ 1.2
HERC2-206ENST00000564519 RIMBP3BA6NNM3 1639 aa22.57■■□□□ 1.2
HERC2-206ENST00000564519 RIMBP3Q9UFD9 1639 aa22.57■■□□□ 1.2
HERC2-206ENST00000564519 FBLN2P98095 1184 aa22.55■■□□□ 1.2
HERC2-206ENST00000564519 ARHGEF11O15085 1522 aa22.52■■□□□ 1.2
HERC2-206ENST00000564519 TDRD9Q8NDG6 1382 aaKnown RBP22.52■■□□□ 1.2
HERC2-206ENST00000564519 CYB5RLQ6IPT4 315 aa22.49■■□□□ 1.19
HERC2-206ENST00000564519 WRNQ14191 1432 aaPredicted RBP eCLIP22.39■■□□□ 1.17
HERC2-206ENST00000564519 SNAPC4Q5SXM2 1469 aa22.37■■□□□ 1.17
HERC2-206ENST00000564519 WDR97A6NE52 1622 aa22.36■■□□□ 1.17
HERC2-206ENST00000564519 TRHP20396 242 aaPredicted RBP22.36■■□□□ 1.17
HERC2-206ENST00000564519 SYNJ1O43426 1573 aa22.36■■□□□ 1.17
HERC2-206ENST00000564519 ABCA10Q8WWZ4 1543 aa22.35■■□□□ 1.17
HERC2-206ENST00000564519 CHD1O14646 1710 aa22.34■■□□□ 1.17
HERC2-206ENST00000564519 CHMP7Q8WUX9 453 aaPredicted RBP22.33■■□□□ 1.17
HERC2-206ENST00000564519 GRIN2BQ13224 1484 aa22.33■■□□□ 1.16
HERC2-206ENST00000564519 TOP2BQ02880 1626 aa22.32■■□□□ 1.16
HERC2-206ENST00000564519 BIVM-ERCC5R4GMW8 1640 aa22.31■■□□□ 1.16
HERC2-206ENST00000564519 GAPVD1Q14C86 1478 aa22.31■■□□□ 1.16
HERC2-206ENST00000564519 ARAP1Q96P48 1450 aa22.28■■□□□ 1.16
HERC2-206ENST00000564519 MAGI1Q96QZ7 1491 aaPredicted RBP22.28■■□□□ 1.16
HERC2-206ENST00000564519 ABCA5Q8WWZ7 1642 aa22.26■■□□□ 1.15
HERC2-206ENST00000564519 SYNJ2O15056 1496 aa22.22■■□□□ 1.15
HERC2-206ENST00000564519 PBRM1Q86U86 1689 aa22.21■■□□□ 1.15
HERC2-206ENST00000564519 CLASP1Q7Z460 1538 aa22.13■■□□□ 1.13
HERC2-206ENST00000564519 ADAMTS12P58397 1594 aa22.08■■□□□ 1.12
HERC2-206ENST00000564519 GRIN2AQ12879 1464 aa22.05■■□□□ 1.12
HERC2-206ENST00000564519 ERICH3Q5RHP9 1530 aa22.05■■□□□ 1.12
HERC2-206ENST00000564519 FHAD1B1AJZ9 1412 aa22.04■■□□□ 1.12
HERC2-206ENST00000564519 NUP160Q12769 1436 aa21.97■■□□□ 1.11
HERC2-206ENST00000564519 CEP170Q5SW79 1584 aa21.96■■□□□ 1.11
HERC2-206ENST00000564519 KIF27Q86VH2 1401 aa21.93■■□□□ 1.1
HERC2-206ENST00000564519 IGF1RP08069 1367 aa21.91■■□□□ 1.1
HERC2-206ENST00000564519 AEBP2Q6ZN18 517 aaPredicted RBP21.87■■□□□ 1.09
HERC2-206ENST00000564519 ERCC6L2Q5T890 1561 aa21.87■■□□□ 1.09
HERC2-206ENST00000564519 SHROOM2Q13796 1616 aa21.79■■□□□ 1.08
HERC2-206ENST00000564519 CARMIL1Q5VZK9 1371 aa21.76■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 122.7 ms