RNA–Protein interactions for RNA: ENST00000564047.1

SPG7-209, Transcript of SPG7, paraplegin matrix AAA peptidase subunit, humanhuman

TSL 2

Gene SPG7, Length 422 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG7-209ENST00000564047 NISCHQ9Y2I1 1504 aa30.2■■■□□ 2.42
SPG7-209ENST00000564047 ABCC9O60706 1549 aa26.68■■□□□ 1.86
SPG7-209ENST00000564047 CCDC180Q9P1Z9 1646 aa26.55■■□□□ 1.84
SPG7-209ENST00000564047 DNAJC5BQ9UF47 199 aa25.48■■□□□ 1.67
SPG7-209ENST00000564047 ZCCHC6Q5VYS8 1495 aaKnown RBP25.28■■□□□ 1.64
SPG7-209ENST00000564047 RB1CC1Q8TDY2 1594 aa25.18■■□□□ 1.62
SPG7-209ENST00000564047 DCAF1Q9Y4B6 1507 aa25.03■■□□□ 1.6
SPG7-209ENST00000564047 DCAF8L2P0C7V8 631 aa24.99■■□□□ 1.59
SPG7-209ENST00000564047 MYO15BQ96JP2 1530 aa24.93■■□□□ 1.58
SPG7-209ENST00000564047 NACADO15069 1562 aa24.86■■□□□ 1.57
SPG7-209ENST00000564047 PABPN1Q86U42 306 aaKnown RBP eCLIP24.73■■□□□ 1.55
SPG7-209ENST00000564047 UNC13AQ9UPW8 1703 aa24.61■■□□□ 1.53
SPG7-209ENST00000564047 BICRAQ9NZM4 1560 aa24.4■■□□□ 1.5
SPG7-209ENST00000564047 SCRIBQ14160 1630 aa24.28■■□□□ 1.48
SPG7-209ENST00000564047 SHROOM4Q9ULL8 1493 aa24.19■■□□□ 1.46
SPG7-209ENST00000564047 CECR2Q9BXF3 1484 aa24.11■■□□□ 1.45
SPG7-209ENST00000564047 CC2D2AQ9P2K1 1620 aa24.09■■□□□ 1.45
SPG7-209ENST00000564047 DNAJC5Q9H3Z4 198 aa23.9■■□□□ 1.42
SPG7-209ENST00000564047 EIF4G1Q04637 1599 aaKnown RBP23.89■■□□□ 1.41
SPG7-209ENST00000564047 BAZ1AQ9NRL2 1556 aaPredicted RBP23.36■■□□□ 1.33
SPG7-209ENST00000564047 SMARCA4P51532 1647 aa23.29■■□□□ 1.32
SPG7-209ENST00000564047 MROH2BQ7Z745 1585 aa23.27■■□□□ 1.32
SPG7-209ENST00000564047 CUX2O14529 1486 aa23.27■■□□□ 1.32
SPG7-209ENST00000564047 RSF1Q96T23 1441 aaPredicted RBP23.25■■□□□ 1.31
SPG7-209ENST00000564047 ERCC6Q03468 1493 aa23.13■■□□□ 1.29
SPG7-209ENST00000564047 SUPT5HO00267 1087 aaKnown RBP23.08■■□□□ 1.29
SPG7-209ENST00000564047 PEG3Q9GZU2 1588 aa23.07■■□□□ 1.28
SPG7-209ENST00000564047 ATAD2BQ9ULI0 1458 aa23.05■■□□□ 1.28
SPG7-209ENST00000564047 SMARCA2P51531 1590 aa23.03■■□□□ 1.28
SPG7-209ENST00000564047 WIZO95785 1651 aa23.02■■□□□ 1.28
SPG7-209ENST00000564047 NCAPD3P42695 1498 aa22.96■■□□□ 1.27
SPG7-209ENST00000564047 BAZ1BQ9UIG0 1483 aaKnown RBP22.87■■□□□ 1.25
SPG7-209ENST00000564047 HMGXB3Q12766 1538 aa22.87■■□□□ 1.25
SPG7-209ENST00000564047 TOP2AP11388 1531 aaKnown RBP22.85■■□□□ 1.25
SPG7-209ENST00000564047 NESP48681 1621 aa22.72■■□□□ 1.23
SPG7-209ENST00000564047 THOC2Q8NI27 1593 aaKnown RBP22.64■■□□□ 1.22
SPG7-209ENST00000564047 TRIM41Q8WV44 630 aa22.63■■□□□ 1.21
SPG7-209ENST00000564047 CCDC88BA6NC98 1476 aa22.59■■□□□ 1.21
SPG7-209ENST00000564047 LAMC3Q9Y6N6 1575 aa22.54■■□□□ 1.2
SPG7-209ENST00000564047 KIF21AQ7Z4S6 1674 aa22.46■■□□□ 1.19
SPG7-209ENST00000564047 PDS5BQ9NTI5 1447 aa22.43■■□□□ 1.18
SPG7-209ENST00000564047 CADPSQ9ULU8 1353 aa22.32■■□□□ 1.16
SPG7-209ENST00000564047 CFTRP13569 1480 aa22.3■■□□□ 1.16
SPG7-209ENST00000564047 MRC2Q9UBG0 1479 aa22.24■■□□□ 1.15
SPG7-209ENST00000564047 WDR62O43379 1518 aa22.21■■□□□ 1.15
SPG7-209ENST00000564047 OSCARQ8IYS5 282 aa22.11■■□□□ 1.13
SPG7-209ENST00000564047 PRDM2Q13029 1718 aa22.08■■□□□ 1.12
SPG7-209ENST00000564047 CEP164Q9UPV0 1460 aa22.05■■□□□ 1.12
SPG7-209ENST00000564047 FANCD2Q9BXW9 1451 aa22.04■■□□□ 1.12
SPG7-209ENST00000564047 ABCC8Q09428 1581 aa21.91■■□□□ 1.1
SPG7-209ENST00000564047 CHIC1Q5VXU3 224 aa21.9■■□□□ 1.1
SPG7-209ENST00000564047 WRNQ14191 1432 aaPredicted RBP eCLIP21.89■■□□□ 1.1
SPG7-209ENST00000564047 RIMBP3CA6NJZ7 1639 aa21.88■■□□□ 1.09
SPG7-209ENST00000564047 RIMBP3BA6NNM3 1639 aa21.88■■□□□ 1.09
SPG7-209ENST00000564047 RIMBP3Q9UFD9 1639 aa21.88■■□□□ 1.09
SPG7-209ENST00000564047 CUX1P39880 1505 aa21.8■■□□□ 1.08
SPG7-209ENST00000564047 URB2Q14146 1524 aaKnown RBP21.79■■□□□ 1.08
SPG7-209ENST00000564047 SYNJ1O43426 1573 aa21.78■■□□□ 1.08
SPG7-209ENST00000564047 DNMBPQ6XZF7 1577 aa21.77■■□□□ 1.08
SPG7-209ENST00000564047 TOP2BQ02880 1626 aa21.76■■□□□ 1.07
SPG7-209ENST00000564047 TOPBP1Q92547 1522 aa21.75■■□□□ 1.07
SPG7-209ENST00000564047 ARHGEF11O15085 1522 aa21.75■■□□□ 1.07
SPG7-209ENST00000564047 BIVM-ERCC5R4GMW8 1640 aa21.74■■□□□ 1.07
SPG7-209ENST00000564047 FGD5Q6ZNL6 1462 aa21.64■■□□□ 1.05
SPG7-209ENST00000564047 IFT140Q96RY7 1462 aa21.63■■□□□ 1.05
SPG7-209ENST00000564047 CYB5RLQ6IPT4 315 aa21.62■■□□□ 1.05
SPG7-209ENST00000564047 ZNF608Q9ULD9 1512 aaPredicted RBP21.61■■□□□ 1.05
SPG7-209ENST00000564047 POLA1P09884 1462 aaPredicted RBP21.61■■□□□ 1.05
SPG7-209ENST00000564047 TRHP20396 242 aaPredicted RBP21.61■■□□□ 1.05
SPG7-209ENST00000564047 SOGA1O94964 1423 aa21.55■■□□□ 1.04
SPG7-209ENST00000564047 RAD54L2Q9Y4B4 1467 aa21.51■■□□□ 1.03
SPG7-209ENST00000564047 EIF4G3O43432 1585 aaKnown RBP21.5■■□□□ 1.03
SPG7-209ENST00000564047 CHD1O14646 1710 aa21.47■■□□□ 1.03
SPG7-209ENST00000564047 ABCA10Q8WWZ4 1543 aa21.47■■□□□ 1.03
SPG7-209ENST00000564047 ARAP1Q96P48 1450 aa21.46■■□□□ 1.03
SPG7-209ENST00000564047 TARBP1Q13395 1621 aaKnown RBP21.45■■□□□ 1.02
SPG7-209ENST00000564047 AEBP2Q6ZN18 517 aaPredicted RBP21.45■■□□□ 1.02
SPG7-209ENST00000564047 KIF27Q86VH2 1401 aa21.4■■□□□ 1.02
SPG7-209ENST00000564047 EEA1Q15075 1411 aa21.39■■□□□ 1.02
SPG7-209ENST00000564047 WDR97A6NE52 1622 aa21.39■■□□□ 1.01
SPG7-209ENST00000564047 FBLN2P98095 1184 aa21.38■■□□□ 1.01
SPG7-209ENST00000564047 RUSC2Q8N2Y8 1516 aa21.36■■□□□ 1.01
SPG7-209ENST00000564047 AQRO60306 1485 aaKnown RBP eCLIP21.35■■□□□ 1.015e-7■■■■■ 52.4
SPG7-209ENST00000564047 TDRD9Q8NDG6 1382 aaKnown RBP21.35■■□□□ 1.01
SPG7-209ENST00000564047 FAM9AQ8IZU1 332 aaPredicted RBP21.31■■□□□ 1
SPG7-209ENST00000564047 ABCA5Q8WWZ7 1642 aa21.3■■□□□ 1
SPG7-209ENST00000564047 GAPVD1Q14C86 1478 aa21.3■■□□□ 1
SPG7-209ENST00000564047 CSRNP3Q8WYN3 585 aa21.28■■□□□ 1
SPG7-209ENST00000564047 IGF1RP08069 1367 aa21.24■□□□□ 0.99
SPG7-209ENST00000564047 GRIN2BQ13224 1484 aa21.22■□□□□ 0.99
SPG7-209ENST00000564047 ERICH3Q5RHP9 1530 aa21.22■□□□□ 0.99
SPG7-209ENST00000564047 CLASP1Q7Z460 1538 aa21.17■□□□□ 0.98
SPG7-209ENST00000564047 PBRM1Q86U86 1689 aa21.15■□□□□ 0.98
SPG7-209ENST00000564047 SNAPC4Q5SXM2 1469 aa21.13■□□□□ 0.97
SPG7-209ENST00000564047 PRXQ9BXM0 1461 aa21.13■□□□□ 0.97
SPG7-209ENST00000564047 CARMIL1Q5VZK9 1371 aa21.13■□□□□ 0.97
SPG7-209ENST00000564047 CHMP7Q8WUX9 453 aaPredicted RBP21.12■□□□□ 0.97
SPG7-209ENST00000564047 CUL7Q14999 1698 aa21.12■□□□□ 0.97
SPG7-209ENST00000564047 MAGI1Q96QZ7 1491 aaPredicted RBP21.1■□□□□ 0.97
SPG7-209ENST00000564047 FHAD1B1AJZ9 1412 aa21.09■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms