RNA–Protein interactions for RNA: ENST00000563240.1

LPCAT4-204, Transcript of lysophosphatidylcholine acyltransferase 4, humanhuman

TSL 2

Gene LPCAT4, Length 939 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LPCAT4-204ENST00000563240 NISCHQ9Y2I1 1504 aa37.53■■■■□ 3.6
LPCAT4-204ENST00000563240 CCDC180Q9P1Z9 1646 aa33.42■■■□□ 2.94
LPCAT4-204ENST00000563240 ABCC9O60706 1549 aa33.35■■■□□ 2.93
LPCAT4-204ENST00000563240 DCAF8L2P0C7V8 631 aa31.83■■■□□ 2.69
LPCAT4-204ENST00000563240 RB1CC1Q8TDY2 1594 aa31.75■■■□□ 2.67
LPCAT4-204ENST00000563240 NACADO15069 1562 aa31.59■■■□□ 2.65
LPCAT4-204ENST00000563240 PABPN1Q86U42 306 aaKnown RBP eCLIP31.2■■■□□ 2.59
LPCAT4-204ENST00000563240 MYO15BQ96JP2 1530 aa31.19■■■□□ 2.58
LPCAT4-204ENST00000563240 ZCCHC6Q5VYS8 1495 aaKnown RBP31.14■■■□□ 2.57
LPCAT4-204ENST00000563240 DNAJC5BQ9UF47 199 aa31.06■■■□□ 2.56
LPCAT4-204ENST00000563240 UNC13AQ9UPW8 1703 aa30.97■■■□□ 2.55
LPCAT4-204ENST00000563240 DCAF1Q9Y4B6 1507 aa30.92■■■□□ 2.54
LPCAT4-204ENST00000563240 BICRAQ9NZM4 1560 aa30.81■■■□□ 2.52
LPCAT4-204ENST00000563240 SCRIBQ14160 1630 aa30.62■■■□□ 2.49
LPCAT4-204ENST00000563240 SHROOM4Q9ULL8 1493 aa30.32■■■□□ 2.44
LPCAT4-204ENST00000563240 CC2D2AQ9P2K1 1620 aa30.06■■■□□ 2.4
LPCAT4-204ENST00000563240 EIF4G1Q04637 1599 aaKnown RBP30.05■■■□□ 2.4
LPCAT4-204ENST00000563240 CECR2Q9BXF3 1484 aa29.97■■■□□ 2.39
LPCAT4-204ENST00000563240 NCAPD3P42695 1498 aa29.2■■■□□ 2.26
LPCAT4-204ENST00000563240 ATAD2BQ9ULI0 1458 aa29.19■■■□□ 2.26
LPCAT4-204ENST00000563240 SMARCA4P51532 1647 aa29.18■■■□□ 2.26
LPCAT4-204ENST00000563240 BAZ1AQ9NRL2 1556 aaPredicted RBP29.09■■■□□ 2.25
LPCAT4-204ENST00000563240 SMARCA2P51531 1590 aa29.07■■■□□ 2.24
LPCAT4-204ENST00000563240 MROH2BQ7Z745 1585 aa28.96■■■□□ 2.23
LPCAT4-204ENST00000563240 HMGXB3Q12766 1538 aa28.95■■■□□ 2.23
LPCAT4-204ENST00000563240 BAZ1BQ9UIG0 1483 aaKnown RBP28.93■■■□□ 2.22
LPCAT4-204ENST00000563240 PEG3Q9GZU2 1588 aa28.83■■■□□ 2.21
LPCAT4-204ENST00000563240 ERCC6Q03468 1493 aa28.76■■■□□ 2.19
LPCAT4-204ENST00000563240 NESP48681 1621 aa28.72■■■□□ 2.19
LPCAT4-204ENST00000563240 WIZO95785 1651 aa28.61■■■□□ 2.17
LPCAT4-204ENST00000563240 CUX2O14529 1486 aa28.49■■■□□ 2.15
LPCAT4-204ENST00000563240 RSF1Q96T23 1441 aaPredicted RBP28.49■■■□□ 2.15
LPCAT4-204ENST00000563240 LAMC3Q9Y6N6 1575 aa28.45■■■□□ 2.14
LPCAT4-204ENST00000563240 CADPSQ9ULU8 1353 aa28.38■■■□□ 2.13
LPCAT4-204ENST00000563240 PDS5BQ9NTI5 1447 aa28.35■■■□□ 2.13
LPCAT4-204ENST00000563240 KIF21AQ7Z4S6 1674 aa28.26■■■□□ 2.11
LPCAT4-204ENST00000563240 THOC2Q8NI27 1593 aaKnown RBP28.24■■■□□ 2.11
LPCAT4-204ENST00000563240 DNAJC5Q9H3Z4 198 aa28.24■■■□□ 2.11
LPCAT4-204ENST00000563240 TOP2AP11388 1531 aaKnown RBP28.23■■■□□ 2.11
LPCAT4-204ENST00000563240 CFTRP13569 1480 aa28.08■■■□□ 2.09
LPCAT4-204ENST00000563240 MRC2Q9UBG0 1479 aa28.08■■■□□ 2.09
LPCAT4-204ENST00000563240 FANCD2Q9BXW9 1451 aa28.05■■■□□ 2.08
LPCAT4-204ENST00000563240 CEP164Q9UPV0 1460 aa28.03■■■□□ 2.08
LPCAT4-204ENST00000563240 CCDC88BA6NC98 1476 aa27.99■■■□□ 2.07
LPCAT4-204ENST00000563240 WDR62O43379 1518 aa27.95■■■□□ 2.06
LPCAT4-204ENST00000563240 URB2Q14146 1524 aaKnown RBP27.79■■■□□ 2.04
LPCAT4-204ENST00000563240 PRDM2Q13029 1718 aa27.67■■■□□ 2.02
LPCAT4-204ENST00000563240 SUPT5HO00267 1087 aaKnown RBP27.65■■■□□ 2.02
LPCAT4-204ENST00000563240 TOPBP1Q92547 1522 aa27.54■■■□□ 2
LPCAT4-204ENST00000563240 ABCC8Q09428 1581 aa27.46■■□□□ 1.99
LPCAT4-204ENST00000563240 IFT140Q96RY7 1462 aa27.45■■□□□ 1.99
LPCAT4-204ENST00000563240 ZNF608Q9ULD9 1512 aaPredicted RBP27.43■■□□□ 1.98
LPCAT4-204ENST00000563240 DNMBPQ6XZF7 1577 aa27.43■■□□□ 1.98
LPCAT4-204ENST00000563240 OSCARQ8IYS5 282 aa27.38■■□□□ 1.97
LPCAT4-204ENST00000563240 POLA1P09884 1462 aaPredicted RBP27.28■■□□□ 1.96
LPCAT4-204ENST00000563240 AQRO60306 1485 aaKnown RBP eCLIP27.26■■□□□ 1.956e-6■■■■□ 25.1
LPCAT4-204ENST00000563240 TRIM41Q8WV44 630 aa27.26■■□□□ 1.95
LPCAT4-204ENST00000563240 RAD54L2Q9Y4B4 1467 aa27.25■■□□□ 1.95
LPCAT4-204ENST00000563240 TARBP1Q13395 1621 aaKnown RBP27.22■■□□□ 1.95
LPCAT4-204ENST00000563240 SOGA1O94964 1423 aa27.22■■□□□ 1.95
LPCAT4-204ENST00000563240 EIF4G3O43432 1585 aaKnown RBP27.21■■□□□ 1.95
LPCAT4-204ENST00000563240 CUX1P39880 1505 aa27.18■■□□□ 1.94
LPCAT4-204ENST00000563240 FGD5Q6ZNL6 1462 aa27.18■■□□□ 1.94
LPCAT4-204ENST00000563240 TDRD9Q8NDG6 1382 aaKnown RBP27.17■■□□□ 1.94
LPCAT4-204ENST00000563240 FBLN2P98095 1184 aa27.13■■□□□ 1.93
LPCAT4-204ENST00000563240 SNAPC4Q5SXM2 1469 aa26.94■■□□□ 1.9
LPCAT4-204ENST00000563240 CHD1O14646 1710 aa26.94■■□□□ 1.9
LPCAT4-204ENST00000563240 CHMP7Q8WUX9 453 aaPredicted RBP26.91■■□□□ 1.9
LPCAT4-204ENST00000563240 GRIN2BQ13224 1484 aa26.89■■□□□ 1.9
LPCAT4-204ENST00000563240 RIMBP3CA6NJZ7 1639 aa26.88■■□□□ 1.89
LPCAT4-204ENST00000563240 RIMBP3BA6NNM3 1639 aa26.88■■□□□ 1.89
LPCAT4-204ENST00000563240 RIMBP3Q9UFD9 1639 aa26.88■■□□□ 1.89
LPCAT4-204ENST00000563240 WRNQ14191 1432 aaPredicted RBP eCLIP26.88■■□□□ 1.89
LPCAT4-204ENST00000563240 WDR97A6NE52 1622 aa26.87■■□□□ 1.89
LPCAT4-204ENST00000563240 GAPVD1Q14C86 1478 aa26.86■■□□□ 1.89
LPCAT4-204ENST00000563240 ARHGEF11O15085 1522 aa26.85■■□□□ 1.89
LPCAT4-204ENST00000563240 ABCA10Q8WWZ4 1543 aa26.84■■□□□ 1.89
LPCAT4-204ENST00000563240 MAGI1Q96QZ7 1491 aaPredicted RBP26.82■■□□□ 1.88
LPCAT4-204ENST00000563240 SYNJ1O43426 1573 aa26.8■■□□□ 1.88
LPCAT4-204ENST00000563240 CYB5RLQ6IPT4 315 aa26.79■■□□□ 1.88
LPCAT4-204ENST00000563240 TOP2BQ02880 1626 aa26.78■■□□□ 1.88
LPCAT4-204ENST00000563240 SYNJ2O15056 1496 aa26.75■■□□□ 1.87
LPCAT4-204ENST00000563240 BIVM-ERCC5R4GMW8 1640 aa26.74■■□□□ 1.87
LPCAT4-204ENST00000563240 PBRM1Q86U86 1689 aa26.73■■□□□ 1.87
LPCAT4-204ENST00000563240 ABCA5Q8WWZ7 1642 aa26.72■■□□□ 1.87
LPCAT4-204ENST00000563240 CLASP1Q7Z460 1538 aa26.64■■□□□ 1.85
LPCAT4-204ENST00000563240 ARAP1Q96P48 1450 aa26.62■■□□□ 1.85
LPCAT4-204ENST00000563240 GRIN2AQ12879 1464 aa26.54■■□□□ 1.84
LPCAT4-204ENST00000563240 ADAMTS12P58397 1594 aa26.53■■□□□ 1.84
LPCAT4-204ENST00000563240 FHAD1B1AJZ9 1412 aa26.51■■□□□ 1.83
LPCAT4-204ENST00000563240 ERICH3Q5RHP9 1530 aa26.48■■□□□ 1.83
LPCAT4-204ENST00000563240 CEP170Q5SW79 1584 aa26.42■■□□□ 1.82
LPCAT4-204ENST00000563240 NUP160Q12769 1436 aa26.42■■□□□ 1.82
LPCAT4-204ENST00000563240 TRHP20396 242 aaPredicted RBP26.41■■□□□ 1.82
LPCAT4-204ENST00000563240 KIF27Q86VH2 1401 aa26.34■■□□□ 1.81
LPCAT4-204ENST00000563240 ERCC6L2Q5T890 1561 aa26.33■■□□□ 1.81
LPCAT4-204ENST00000563240 IGF1RP08069 1367 aa26.33■■□□□ 1.8
LPCAT4-204ENST00000563240 JPH4Q96JJ6 628 aa26.27■■□□□ 1.8
LPCAT4-204ENST00000563240 PRG4Q92954 1404 aaPredicted RBP26.22■■□□□ 1.79
LPCAT4-204ENST00000563240 SHROOM2Q13796 1616 aa26.21■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms