RNA–Protein interactions for RNA: ENST00000562624.2

LINC02249-202, Transcript of long intergenic non-protein coding RNA 2249, humanhuman

TSL 1 (best) BASIC

Gene LINC02249, Length 4,260 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC02249-202ENST00000562624 NISCHQ9Y2I1 1504 aa13.82□□□□□ -0.2
LINC02249-202ENST00000562624 DCAF8L2P0C7V8 631 aa13.06□□□□□ -0.32
LINC02249-202ENST00000562624 SHROOM4Q9ULL8 1493 aa12.22□□□□□ -0.45
LINC02249-202ENST00000562624 ABCC9O60706 1549 aa12.22□□□□□ -0.45
LINC02249-202ENST00000562624 SUPT5HO00267 1087 aaKnown RBP11.89□□□□□ -0.51
LINC02249-202ENST00000562624 CCDC180Q9P1Z9 1646 aa11.85□□□□□ -0.51
LINC02249-202ENST00000562624 PABPN1Q86U42 306 aaKnown RBP eCLIP11.83□□□□□ -0.52
LINC02249-202ENST00000562624 ZCCHC6Q5VYS8 1495 aaKnown RBP11.43□□□□□ -0.58
LINC02249-202ENST00000562624 SCRIBQ14160 1630 aa11.4□□□□□ -0.58
LINC02249-202ENST00000562624 RB1CC1Q8TDY2 1594 aa11.35□□□□□ -0.59
LINC02249-202ENST00000562624 EHMT2Q96KQ7 1210 aa11.33□□□□□ -0.6
LINC02249-202ENST00000562624 NACADO15069 1562 aa11.25□□□□□ -0.61
LINC02249-202ENST00000562624 MYO15BQ96JP2 1530 aa11.16□□□□□ -0.62
LINC02249-202ENST00000562624 FAM9AQ8IZU1 332 aaPredicted RBP11.15□□□□□ -0.62
LINC02249-202ENST00000562624 DCAF1Q9Y4B6 1507 aa11.13□□□□□ -0.63
LINC02249-202ENST00000562624 PELP1Q8IZL8 1130 aaKnown RBP11.13□□□□□ -0.63
LINC02249-202ENST00000562624 RANGAP1P46060 587 aaPredicted RBP11.01□□□□□ -0.65
LINC02249-202ENST00000562624 TRIM41Q8WV44 630 aa11□□□□□ -0.65
LINC02249-202ENST00000562624 MYT1Q01538 1121 aa10.98□□□□□ -0.65
LINC02249-202ENST00000562624 CECR2Q9BXF3 1484 aa10.97□□□□□ -0.65
LINC02249-202ENST00000562624 DNAJC5BQ9UF47 199 aa10.89□□□□□ -0.67
LINC02249-202ENST00000562624 TTBK1Q5TCY1 1321 aaPredicted RBP10.85□□□□□ -0.67
LINC02249-202ENST00000562624 RSF1Q96T23 1441 aaPredicted RBP10.82□□□□□ -0.68
LINC02249-202ENST00000562624 FBLN2P98095 1184 aa10.81□□□□□ -0.68
LINC02249-202ENST00000562624 BAZ1BQ9UIG0 1483 aaKnown RBP10.79□□□□□ -0.68
LINC02249-202ENST00000562624 UBTFP17480 764 aaKnown RBP10.77□□□□□ -0.69
LINC02249-202ENST00000562624 MROH2BQ7Z745 1585 aa10.77□□□□□ -0.69
LINC02249-202ENST00000562624 ATP1B4Q9UN42 357 aaPredicted RBP10.76□□□□□ -0.69
LINC02249-202ENST00000562624 BAZ1AQ9NRL2 1556 aaPredicted RBP10.74□□□□□ -0.69
LINC02249-202ENST00000562624 CHIC1Q5VXU3 224 aa10.71□□□□□ -0.69
LINC02249-202ENST00000562624 ERCC6Q03468 1493 aa10.67□□□□□ -0.7
LINC02249-202ENST00000562624 BICRAQ9NZM4 1560 aa10.67□□□□□ -0.7
LINC02249-202ENST00000562624 EIF4G1Q04637 1599 aaKnown RBP10.65□□□□□ -0.7
LINC02249-202ENST00000562624 ATAD2BQ9ULI0 1458 aa10.63□□□□□ -0.71
LINC02249-202ENST00000562624 WIZO95785 1651 aa10.62□□□□□ -0.71
LINC02249-202ENST00000562624 LOC105371045A0A1W2PR82 267 aa10.62□□□□□ -0.71
LINC02249-202ENST00000562624 UNC13AQ9UPW8 1703 aa10.59□□□□□ -0.71
LINC02249-202ENST00000562624 SMARCA2P51531 1590 aa10.59□□□□□ -0.71
LINC02249-202ENST00000562624 SMARCA4P51532 1647 aa10.58□□□□□ -0.72
LINC02249-202ENST00000562624 CC2D2AQ9P2K1 1620 aa10.58□□□□□ -0.72
LINC02249-202ENST00000562624 APLP2Q06481 763 aa10.58□□□□□ -0.72
LINC02249-202ENST00000562624 HRCP23327 699 aa10.57□□□□□ -0.72
LINC02249-202ENST00000562624 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.57□□□□□ -0.72
LINC02249-202ENST00000562624 HNRNPUL2Q1KMD3 747 aaKnown RBP10.57□□□□□ -0.72
LINC02249-202ENST00000562624 PCGF6Q9BYE7 350 aa10.55□□□□□ -0.72
LINC02249-202ENST00000562624 PPARGC1BQ86YN6 1023 aaKnown RBP10.54□□□□□ -0.72
LINC02249-202ENST00000562624 CCDC88BA6NC98 1476 aa10.53□□□□□ -0.72
LINC02249-202ENST00000562624 P3H3Q8IVL6 736 aa10.5□□□□□ -0.73
LINC02249-202ENST00000562624 ARID3CA6NKF2 412 aa10.5□□□□□ -0.73
LINC02249-202ENST00000562624 CADPSQ9ULU8 1353 aa10.48□□□□□ -0.73
LINC02249-202ENST00000562624 CHMP7Q8WUX9 453 aaPredicted RBP10.47□□□□□ -0.73
LINC02249-202ENST00000562624 NCAPD3P42695 1498 aa10.46□□□□□ -0.73
LINC02249-202ENST00000562624 NESP48681 1621 aa10.46□□□□□ -0.73
LINC02249-202ENST00000562624 PDS5BQ9NTI5 1447 aa10.46□□□□□ -0.74
LINC02249-202ENST00000562624 ZEB1P37275 1124 aaPredicted RBP10.44□□□□□ -0.74
LINC02249-202ENST00000562624 CENPBP07199 599 aaPredicted RBP10.44□□□□□ -0.74
LINC02249-202ENST00000562624 CSRNP3Q8WYN3 585 aa10.43□□□□□ -0.74
LINC02249-202ENST00000562624 TOP2AP11388 1531 aaKnown RBP10.42□□□□□ -0.74
LINC02249-202ENST00000562624 WRNQ14191 1432 aaPredicted RBP eCLIP10.41□□□□□ -0.74
LINC02249-202ENST00000562624 TDRD9Q8NDG6 1382 aaKnown RBP10.39□□□□□ -0.75
LINC02249-202ENST00000562624 ABCC8Q09428 1581 aa10.36□□□□□ -0.75
LINC02249-202ENST00000562624 FANCD2Q9BXW9 1451 aa10.36□□□□□ -0.75
LINC02249-202ENST00000562624 MYT1LQ9UL68 1186 aa10.35□□□□□ -0.75
LINC02249-202ENST00000562624 CEP164Q9UPV0 1460 aa10.34□□□□□ -0.75
LINC02249-202ENST00000562624 ITGAEP38570 1179 aa10.3□□□□□ -0.76
LINC02249-202ENST00000562624 SOGA1O94964 1423 aa10.3□□□□□ -0.76
LINC02249-202ENST00000562624 CUX2O14529 1486 aa10.28□□□□□ -0.76
LINC02249-202ENST00000562624 HMGXB3Q12766 1538 aa10.26□□□□□ -0.77
LINC02249-202ENST00000562624 KIF27Q86VH2 1401 aa10.23□□□□□ -0.77
LINC02249-202ENST00000562624 NPM1P06748 294 aaKnown RBP eCLIP10.22□□□□□ -0.77
LINC02249-202ENST00000562624 RAD54L2Q9Y4B4 1467 aa10.22□□□□□ -0.77
LINC02249-202ENST00000562624 CFTRP13569 1480 aa10.21□□□□□ -0.77
LINC02249-202ENST00000562624 PEG3Q9GZU2 1588 aa10.21□□□□□ -0.78
LINC02249-202ENST00000562624 AQRO60306 1485 aaKnown RBP eCLIP10.19□□□□□ -0.78
LINC02249-202ENST00000562624 KCNH8Q96L42 1107 aa10.17□□□□□ -0.78
LINC02249-202ENST00000562624 CARMIL1Q5VZK9 1371 aa10.17□□□□□ -0.78
LINC02249-202ENST00000562624 TRHP20396 242 aaPredicted RBP10.16□□□□□ -0.78
LINC02249-202ENST00000562624 CYB5RLQ6IPT4 315 aa10.16□□□□□ -0.78
LINC02249-202ENST00000562624 OSCARQ8IYS5 282 aa10.16□□□□□ -0.78
LINC02249-202ENST00000562624 FGD5Q6ZNL6 1462 aa10.16□□□□□ -0.78
LINC02249-202ENST00000562624 ZNF777Q9ULD5 760 aaPredicted RBP10.15□□□□□ -0.78
LINC02249-202ENST00000562624 MRC2Q9UBG0 1479 aa10.13□□□□□ -0.79
LINC02249-202ENST00000562624 FAM50AQ14320 339 aaKnown RBP10.13□□□□□ -0.79
LINC02249-202ENST00000562624 TRIM26Q12899 539 aaPredicted RBP10.12□□□□□ -0.79
LINC02249-202ENST00000562624 RUSC2Q8N2Y8 1516 aa10.12□□□□□ -0.79
LINC02249-202ENST00000562624 PLPPR3Q6T4P5 718 aa10.09□□□□□ -0.79
LINC02249-202ENST00000562624 LAMC3Q9Y6N6 1575 aa10.09□□□□□ -0.79
LINC02249-202ENST00000562624 TOPBP1Q92547 1522 aa10.08□□□□□ -0.8
LINC02249-202ENST00000562624 JPH4Q96JJ6 628 aa10.07□□□□□ -0.8
LINC02249-202ENST00000562624 GAPVD1Q14C86 1478 aa10.06□□□□□ -0.8
LINC02249-202ENST00000562624 POLA1P09884 1462 aaPredicted RBP10.05□□□□□ -0.8
LINC02249-202ENST00000562624 CDK11AQ9UQ88 783 aaPredicted RBP10.05□□□□□ -0.8
LINC02249-202ENST00000562624 ERICH6Q7L0X2 663 aa10.05□□□□□ -0.8
LINC02249-202ENST00000562624 URB2Q14146 1524 aaKnown RBP10.03□□□□□ -0.8
LINC02249-202ENST00000562624 CUX1P39880 1505 aa10.03□□□□□ -0.8
LINC02249-202ENST00000562624 CCER1Q8TC90 406 aaPredicted RBP10.03□□□□□ -0.8
LINC02249-202ENST00000562624 CLIP1P30622 1438 aa10.02□□□□□ -0.81
LINC02249-202ENST00000562624 ZNF608Q9ULD9 1512 aaPredicted RBP10.01□□□□□ -0.81
LINC02249-202ENST00000562624 SYNJ1O43426 1573 aa10.01□□□□□ -0.81
LINC02249-202ENST00000562624 IGF1RP08069 1367 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms