RNA–Protein interactions for RNA: ENST00000562610.5

COMMD4-206, Transcript of COMM domain containing 4, humanhuman

TSL 3

Gene COMMD4, Length 850 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-206ENST00000562610 NISCHQ9Y2I1 1504 aa39.42■■■■□ 3.9
COMMD4-206ENST00000562610 CCDC180Q9P1Z9 1646 aa35.24■■■■□ 3.23
COMMD4-206ENST00000562610 ABCC9O60706 1549 aa34.46■■■■□ 3.11
COMMD4-206ENST00000562610 RB1CC1Q8TDY2 1594 aa33.15■■■□□ 2.9
COMMD4-206ENST00000562610 NACADO15069 1562 aa33.04■■■□□ 2.88
COMMD4-206ENST00000562610 DCAF8L2P0C7V8 631 aa32.92■■■□□ 2.86
COMMD4-206ENST00000562610 ZCCHC6Q5VYS8 1495 aaKnown RBP32.85■■■□□ 2.85
COMMD4-206ENST00000562610 MYO15BQ96JP2 1530 aa32.75■■■□□ 2.83
COMMD4-206ENST00000562610 DCAF1Q9Y4B6 1507 aa32.6■■■□□ 2.81
COMMD4-206ENST00000562610 UNC13AQ9UPW8 1703 aa32.56■■■□□ 2.8
COMMD4-206ENST00000562610 SCRIBQ14160 1630 aa32.14■■■□□ 2.74
COMMD4-206ENST00000562610 BICRAQ9NZM4 1560 aa32.12■■■□□ 2.73
COMMD4-206ENST00000562610 PABPN1Q86U42 306 aaKnown RBP eCLIP32.1■■■□□ 2.73
COMMD4-206ENST00000562610 SHROOM4Q9ULL8 1493 aa31.74■■■□□ 2.67
COMMD4-206ENST00000562610 DNAJC5BQ9UF47 199 aa31.57■■■□□ 2.64
COMMD4-206ENST00000562610 EIF4G1Q04637 1599 aaKnown RBP31.3■■■□□ 2.6
COMMD4-206ENST00000562610 CC2D2AQ9P2K1 1620 aa31.22■■■□□ 2.59
COMMD4-206ENST00000562610 CECR2Q9BXF3 1484 aa30.95■■■□□ 2.55
COMMD4-206ENST00000562610 SMARCA4P51532 1647 aa30.69■■■□□ 2.5
COMMD4-206ENST00000562610 BAZ1AQ9NRL2 1556 aaPredicted RBP30.61■■■□□ 2.49
COMMD4-206ENST00000562610 SMARCA2P51531 1590 aa30.47■■■□□ 2.47
COMMD4-206ENST00000562610 ATAD2BQ9ULI0 1458 aa30.44■■■□□ 2.46
COMMD4-206ENST00000562610 NCAPD3P42695 1498 aa30.4■■■□□ 2.46
COMMD4-206ENST00000562610 MROH2BQ7Z745 1585 aa30.39■■■□□ 2.46
COMMD4-206ENST00000562610 HMGXB3Q12766 1538 aa30.36■■■□□ 2.45
COMMD4-206ENST00000562610 PEG3Q9GZU2 1588 aa30.34■■■□□ 2.45
COMMD4-206ENST00000562610 BAZ1BQ9UIG0 1483 aaKnown RBP30.25■■■□□ 2.43
COMMD4-206ENST00000562610 WIZO95785 1651 aa30.15■■■□□ 2.42
COMMD4-206ENST00000562610 RSF1Q96T23 1441 aaPredicted RBP29.95■■■□□ 2.38
COMMD4-206ENST00000562610 NESP48681 1621 aa29.79■■■□□ 2.36
COMMD4-206ENST00000562610 TOP2AP11388 1531 aaKnown RBP29.78■■■□□ 2.36
COMMD4-206ENST00000562610 ERCC6Q03468 1493 aa29.74■■■□□ 2.35
COMMD4-206ENST00000562610 LAMC3Q9Y6N6 1575 aa29.74■■■□□ 2.35
COMMD4-206ENST00000562610 KIF21AQ7Z4S6 1674 aa29.6■■■□□ 2.33
COMMD4-206ENST00000562610 CADPSQ9ULU8 1353 aa29.51■■■□□ 2.31
COMMD4-206ENST00000562610 PDS5BQ9NTI5 1447 aa29.45■■■□□ 2.31
COMMD4-206ENST00000562610 THOC2Q8NI27 1593 aaKnown RBP29.45■■■□□ 2.31
COMMD4-206ENST00000562610 CUX2O14529 1486 aa29.42■■■□□ 2.3
COMMD4-206ENST00000562610 PRDM2Q13029 1718 aa29.4■■■□□ 2.3
COMMD4-206ENST00000562610 CCDC88BA6NC98 1476 aa29.36■■■□□ 2.29
COMMD4-206ENST00000562610 CFTRP13569 1480 aa29.35■■■□□ 2.29
COMMD4-206ENST00000562610 FANCD2Q9BXW9 1451 aa29.25■■■□□ 2.27
COMMD4-206ENST00000562610 CEP164Q9UPV0 1460 aa29.25■■■□□ 2.27
COMMD4-206ENST00000562610 MRC2Q9UBG0 1479 aa29.22■■■□□ 2.27
COMMD4-206ENST00000562610 WDR62O43379 1518 aa29.15■■■□□ 2.26
COMMD4-206ENST00000562610 SUPT5HO00267 1087 aaKnown RBP29.13■■■□□ 2.25
COMMD4-206ENST00000562610 URB2Q14146 1524 aaKnown RBP28.97■■■□□ 2.23
COMMD4-206ENST00000562610 DNMBPQ6XZF7 1577 aa28.79■■■□□ 2.2
COMMD4-206ENST00000562610 TOPBP1Q92547 1522 aa28.78■■■□□ 2.2
COMMD4-206ENST00000562610 ABCC8Q09428 1581 aa28.74■■■□□ 2.19
COMMD4-206ENST00000562610 IFT140Q96RY7 1462 aa28.6■■■□□ 2.17
COMMD4-206ENST00000562610 CUX1P39880 1505 aa28.53■■■□□ 2.16
COMMD4-206ENST00000562610 POLA1P09884 1462 aaPredicted RBP28.53■■■□□ 2.16
COMMD4-206ENST00000562610 TARBP1Q13395 1621 aaKnown RBP28.51■■■□□ 2.15
COMMD4-206ENST00000562610 DNAJC5Q9H3Z4 198 aa28.5■■■□□ 2.15
COMMD4-206ENST00000562610 EIF4G3O43432 1585 aaKnown RBP28.5■■■□□ 2.15
COMMD4-206ENST00000562610 ZNF608Q9ULD9 1512 aaPredicted RBP28.48■■■□□ 2.15
COMMD4-206ENST00000562610 FGD5Q6ZNL6 1462 aa28.46■■■□□ 2.15
COMMD4-206ENST00000562610 RAD54L2Q9Y4B4 1467 aa28.39■■■□□ 2.13
COMMD4-206ENST00000562610 WDR97A6NE52 1622 aa28.36■■■□□ 2.13
COMMD4-206ENST00000562610 SOGA1O94964 1423 aa28.35■■■□□ 2.13
COMMD4-206ENST00000562610 BIVM-ERCC5R4GMW8 1640 aa28.34■■■□□ 2.13
COMMD4-206ENST00000562610 TOP2BQ02880 1626 aa28.3■■■□□ 2.12
COMMD4-206ENST00000562610 SYNJ1O43426 1573 aa28.3■■■□□ 2.12
COMMD4-206ENST00000562610 AQRO60306 1485 aaKnown RBP eCLIP28.28■■■□□ 2.12
COMMD4-206ENST00000562610 WRNQ14191 1432 aaPredicted RBP eCLIP28.28■■■□□ 2.12
COMMD4-206ENST00000562610 CHD1O14646 1710 aa28.21■■■□□ 2.11
COMMD4-206ENST00000562610 PBRM1Q86U86 1689 aa28.2■■■□□ 2.11
COMMD4-206ENST00000562610 TDRD9Q8NDG6 1382 aaKnown RBP28.2■■■□□ 2.1
COMMD4-206ENST00000562610 ABCA10Q8WWZ4 1543 aa28.14■■■□□ 2.1
COMMD4-206ENST00000562610 ABCA5Q8WWZ7 1642 aa28.14■■■□□ 2.09
COMMD4-206ENST00000562610 SNAPC4Q5SXM2 1469 aa28.08■■■□□ 2.09
COMMD4-206ENST00000562610 OSCARQ8IYS5 282 aa28.08■■■□□ 2.09
COMMD4-206ENST00000562610 GRIN2BQ13224 1484 aa28.07■■■□□ 2.08
COMMD4-206ENST00000562610 GAPVD1Q14C86 1478 aa28.06■■■□□ 2.08
COMMD4-206ENST00000562610 MAGI1Q96QZ7 1491 aaPredicted RBP28.02■■■□□ 2.08
COMMD4-206ENST00000562610 FBLN2P98095 1184 aa27.97■■■□□ 2.07
COMMD4-206ENST00000562610 SYNJ2O15056 1496 aa27.91■■■□□ 2.06
COMMD4-206ENST00000562610 ADAMTS12P58397 1594 aa27.88■■■□□ 2.05
COMMD4-206ENST00000562610 CHMP7Q8WUX9 453 aaPredicted RBP27.85■■■□□ 2.05
COMMD4-206ENST00000562610 ERICH3Q5RHP9 1530 aa27.83■■■□□ 2.05
COMMD4-206ENST00000562610 RIMBP3CA6NJZ7 1639 aa27.83■■■□□ 2.05
COMMD4-206ENST00000562610 RIMBP3BA6NNM3 1639 aa27.83■■■□□ 2.05
COMMD4-206ENST00000562610 RIMBP3Q9UFD9 1639 aa27.83■■■□□ 2.05
COMMD4-206ENST00000562610 CLASP1Q7Z460 1538 aa27.77■■■□□ 2.04
COMMD4-206ENST00000562610 ARHGEF11O15085 1522 aa27.76■■■□□ 2.03
COMMD4-206ENST00000562610 GRIN2AQ12879 1464 aa27.73■■■□□ 2.03
COMMD4-206ENST00000562610 FHAD1B1AJZ9 1412 aa27.71■■■□□ 2.03
COMMD4-206ENST00000562610 KIF27Q86VH2 1401 aa27.69■■■□□ 2.02
COMMD4-206ENST00000562610 CUL7Q14999 1698 aa27.66■■■□□ 2.02
COMMD4-206ENST00000562610 CEP170Q5SW79 1584 aa27.65■■■□□ 2.02
COMMD4-206ENST00000562610 TRIM41Q8WV44 630 aa27.63■■■□□ 2.01
COMMD4-206ENST00000562610 NUP160Q12769 1436 aa27.57■■■□□ 2
COMMD4-206ENST00000562610 ARAP1Q96P48 1450 aa27.51■■■□□ 2
COMMD4-206ENST00000562610 IGF1RP08069 1367 aa27.5■■□□□ 1.99
COMMD4-206ENST00000562610 RUSC2Q8N2Y8 1516 aa27.48■■□□□ 1.99
COMMD4-206ENST00000562610 SHROOM2Q13796 1616 aa27.47■■□□□ 1.99
COMMD4-206ENST00000562610 CYB5RLQ6IPT4 315 aa27.4■■□□□ 1.98
COMMD4-206ENST00000562610 ERCC6L2Q5T890 1561 aa27.39■■□□□ 1.98
COMMD4-206ENST00000562610 CARMIL1Q5VZK9 1371 aa27.38■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms