RNA–Protein interactions for RNA: ENST00000562543.5

TCF4-213, Transcript of transcription factor 4, humanhuman

TSL 1 (best)

Gene TCF4, Length 598 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-213ENST00000562543 AEBP2Q6ZN18 517 aaPredicted RBP25.93■■□□□ 1.74
TCF4-213ENST00000562543 CHIC1Q5VXU3 224 aa24.45■■□□□ 1.5
TCF4-213ENST00000562543 SENP3Q9H4L4 574 aaPredicted RBP21.97■■□□□ 1.11
TCF4-213ENST00000562543 PHF23Q9BUL5 403 aaPredicted RBP21.78■■□□□ 1.08
TCF4-213ENST00000562543 FOXD1Q16676 465 aa20.61■□□□□ 0.89
TCF4-213ENST00000562543 PLPPR3Q6T4P5 718 aa19.47■□□□□ 0.71
TCF4-213ENST00000562543 PPP6R1Q9UPN7 881 aa19.29■□□□□ 0.68
TCF4-213ENST00000562543 ADRA2BP18089 450 aa19.21■□□□□ 0.67
TCF4-213ENST00000562543 PIAS4Q8N2W9 510 aaPredicted RBP19.21■□□□□ 0.67
TCF4-213ENST00000562543 MSH5O43196 834 aa19.17■□□□□ 0.66
TCF4-213ENST00000562543 POTEDQ86YR6 584 aa18.95■□□□□ 0.62
TCF4-213ENST00000562543 MAPK8IP2Q13387 824 aaPredicted RBP17.71■□□□□ 0.43
TCF4-213ENST00000562543 DMRT2Q9Y5R5 561 aa17.44■□□□□ 0.38
TCF4-213ENST00000562543 SCAF1Q9H7N4 1312 aaKnown RBP17.39■□□□□ 0.37
TCF4-213ENST00000562543 PPP4R3CPQ6ZMV5 832 aa17.13■□□□□ 0.33
TCF4-213ENST00000562543 DCAF8L1A6NGE4 600 aa16.84■□□□□ 0.29
TCF4-213ENST00000562543 HOXD11P31277 338 aaPredicted RBP16.76■□□□□ 0.27
TCF4-213ENST00000562543 CNKSR2Q8WXI2 1034 aa16.75■□□□□ 0.27
TCF4-213ENST00000562543 RNF216Q9NWF9 866 aaPredicted RBP16.61■□□□□ 0.25
TCF4-213ENST00000562543 CACNB1Q02641 598 aaPredicted RBP16.59■□□□□ 0.25
TCF4-213ENST00000562543 RNF39Q9H2S5 420 aa16.42■□□□□ 0.22
TCF4-213ENST00000562543 NCBP3Q53F19 620 aaKnown RBP16.34■□□□□ 0.21
TCF4-213ENST00000562543 NPM3O75607 178 aaKnown RBP16.22■□□□□ 0.19
TCF4-213ENST00000562543 NISCHQ9Y2I1 1504 aa16.13■□□□□ 0.17
TCF4-213ENST00000562543 DNAJC5BQ9UF47 199 aa16.12■□□□□ 0.17
TCF4-213ENST00000562543 C1QBPQ07021 282 aaKnown RBP16.11■□□□□ 0.17
TCF4-213ENST00000562543 ABCC9O60706 1549 aa16.08■□□□□ 0.16
TCF4-213ENST00000562543 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.02■□□□□ 0.16
TCF4-213ENST00000562543 KCNA4P22459 653 aa15.9■□□□□ 0.14
TCF4-213ENST00000562543 U3KPZ7 1027 aaPredicted RBP15.69■□□□□ 0.1
TCF4-213ENST00000562543 DNAJC5Q9H3Z4 198 aa15.65■□□□□ 0.1
TCF4-213ENST00000562543 SPINK5Q9NQ38 1064 aaPredicted RBP15.55■□□□□ 0.08
TCF4-213ENST00000562543 SLC4A2P04920 1241 aa15.54■□□□□ 0.08
TCF4-213ENST00000562543 CAPN15O75808 1086 aa15.47■□□□□ 0.07
TCF4-213ENST00000562543 DSG3P32926 999 aa15.38■□□□□ 0.05
TCF4-213ENST00000562543 TRHP20396 242 aaPredicted RBP15.24■□□□□ 0.03
TCF4-213ENST00000562543 ABCB7O75027 752 aa15.17■□□□□ 0.02
TCF4-213ENST00000562543 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.07■□□□□ 0
TCF4-213ENST00000562543 HNRNPUL2Q1KMD3 747 aaKnown RBP15.07■□□□□ 0
TCF4-213ENST00000562543 ZNF219Q9P2Y4 722 aaPredicted RBP15.07■□□□□ 0
TCF4-213ENST00000562543 CCDC180Q9P1Z9 1646 aa15.06■□□□□ 0
TCF4-213ENST00000562543 APLP2Q06481 763 aa15.05■□□□□ -0
TCF4-213ENST00000562543 SAMD1Q6SPF0 538 aaPredicted RBP15.03■□□□□ -0
TCF4-213ENST00000562543 SLC4A1APQ9BWU0 796 aaKnown RBP14.94□□□□□ -0.02
TCF4-213ENST00000562543 MYCNP04198 464 aaPredicted RBP14.92□□□□□ -0.02
TCF4-213ENST00000562543 RB1CC1Q8TDY2 1594 aa14.84□□□□□ -0.03
TCF4-213ENST00000562543 POTEHQ6S545 545 aa14.81□□□□□ -0.04
TCF4-213ENST00000562543 POLA2Q14181 598 aa14.8□□□□□ -0.04
TCF4-213ENST00000562543 ATF5Q9Y2D1 282 aaPredicted RBP14.76□□□□□ -0.05
TCF4-213ENST00000562543 FOXD4L1Q9NU39 408 aa14.75□□□□□ -0.05
TCF4-213ENST00000562543 PABPN1Q86U42 306 aaKnown RBP eCLIP14.71□□□□□ -0.05
TCF4-213ENST00000562543 ZBTB22O15209 634 aa14.65□□□□□ -0.06
TCF4-213ENST00000562543 CECR2Q9BXF3 1484 aa14.63□□□□□ -0.07
TCF4-213ENST00000562543 UNC13AQ9UPW8 1703 aa14.58□□□□□ -0.07
TCF4-213ENST00000562543 RBM42Q9BTD8 480 aaKnown RBP14.55□□□□□ -0.08
TCF4-213ENST00000562543 CC2D2AQ9P2K1 1620 aa14.52□□□□□ -0.08
TCF4-213ENST00000562543 BICRAQ9NZM4 1560 aa14.51□□□□□ -0.09
TCF4-213ENST00000562543 NACADO15069 1562 aa14.46□□□□□ -0.09
TCF4-213ENST00000562543 CUX2O14529 1486 aa14.4□□□□□ -0.1
TCF4-213ENST00000562543 TRIM41Q8WV44 630 aa14.4□□□□□ -0.1
TCF4-213ENST00000562543 CHRDL2Q6WN34 429 aa14.36□□□□□ -0.11
TCF4-213ENST00000562543 OSCARQ8IYS5 282 aa14.33□□□□□ -0.12
TCF4-213ENST00000562543 ZBTB12Q9Y330 459 aaPredicted RBP14.32□□□□□ -0.12
TCF4-213ENST00000562543 AKT1S1Q96B36 256 aa14.25□□□□□ -0.13
TCF4-213ENST00000562543 ATXN8OSP0DMR3 200 aa14.23□□□□□ -0.13
TCF4-213ENST00000562543 EIF4G1Q04637 1599 aaKnown RBP14.22□□□□□ -0.13
TCF4-213ENST00000562543 SHROOM4Q9ULL8 1493 aa14.2□□□□□ -0.14
TCF4-213ENST00000562543 REM2Q8IYK8 340 aaPredicted RBP14.2□□□□□ -0.14
TCF4-213ENST00000562543 PITPNM1O00562 1244 aa14.05□□□□□ -0.16
TCF4-213ENST00000562543 PIP4P2Q8N4L2 257 aa14.04□□□□□ -0.16
TCF4-213ENST00000562543 MKRN4PQ13434 485 aaPredicted RBP14.02□□□□□ -0.17
TCF4-213ENST00000562543 FBLN2P98095 1184 aa14.01□□□□□ -0.17
TCF4-213ENST00000562543 ERCC6Q03468 1493 aa13.95□□□□□ -0.18
TCF4-213ENST00000562543 SPDYE2BA6NHP3 402 aa13.93□□□□□ -0.18
TCF4-213ENST00000562543 SPDYE6P0CI01 402 aa13.93□□□□□ -0.18
TCF4-213ENST00000562543 SPDYE2Q495Y8 402 aa13.93□□□□□ -0.18
TCF4-213ENST00000562543 MYO15BQ96JP2 1530 aa13.91□□□□□ -0.18
TCF4-213ENST00000562543 FXR2P51116 673 aaKnown RBP eCLIP13.9□□□□□ -0.18
TCF4-213ENST00000562543 DCAF8L2P0C7V8 631 aa13.89□□□□□ -0.19
TCF4-213ENST00000562543 CSRNP3Q8WYN3 585 aa13.89□□□□□ -0.19
TCF4-213ENST00000562543 SP7Q8TDD2 431 aaPredicted RBP13.84□□□□□ -0.19
TCF4-213ENST00000562543 ZNF692Q9BU19 519 aaPredicted RBP13.83□□□□□ -0.2
TCF4-213ENST00000562543 HAX1O00165 279 aa13.82□□□□□ -0.2
TCF4-213ENST00000562543 CLEC11AQ9Y240 323 aa13.81□□□□□ -0.2
TCF4-213ENST00000562543 SSUH2Q9Y2M2 353 aa13.77□□□□□ -0.21
TCF4-213ENST00000562543 EVX2Q03828 476 aa13.73□□□□□ -0.21
TCF4-213ENST00000562543 EHMT2Q96KQ7 1210 aa13.72□□□□□ -0.21
TCF4-213ENST00000562543 SPDYE1Q8NFV5 336 aaPredicted RBP13.71□□□□□ -0.21
TCF4-213ENST00000562543 THOC2Q8NI27 1593 aaKnown RBP13.7□□□□□ -0.22
TCF4-213ENST00000562543 PRKAR2AP13861 404 aaKnown RBP13.69□□□□□ -0.22
TCF4-213ENST00000562543 SCRIBQ14160 1630 aa13.6□□□□□ -0.23
TCF4-213ENST00000562543 CHADLQ6NUI6 762 aa13.59□□□□□ -0.23
TCF4-213ENST00000562543 ILDR1Q86SU0 546 aaPredicted RBP13.58□□□□□ -0.24
TCF4-213ENST00000562543 BAZ1AQ9NRL2 1556 aaPredicted RBP13.53□□□□□ -0.24
TCF4-213ENST00000562543 PRR29P0C7W0 189 aa13.52□□□□□ -0.25
TCF4-213ENST00000562543 RIMBP3CA6NJZ7 1639 aa13.51□□□□□ -0.25
TCF4-213ENST00000562543 RIMBP3BA6NNM3 1639 aa13.51□□□□□ -0.25
TCF4-213ENST00000562543 RIMBP3Q9UFD9 1639 aa13.51□□□□□ -0.25
TCF4-213ENST00000562543 NESP48681 1621 aa13.5□□□□□ -0.25
TCF4-213ENST00000562543 C19orf67A6NJJ6 358 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 132.7 ms