RNA–Protein interactions for RNA: ENST00000562425.1

PKD1-226, Transcript of polycystin 1, transient receptor potential channel interacting, humanhuman

TSL 3

Gene PKD1, Length 608 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKD1-226ENST00000562425 NISCHQ9Y2I1 1504 aa39.55■■■■□ 3.92
PKD1-226ENST00000562425 ABCC9O60706 1549 aa35.16■■■■□ 3.22
PKD1-226ENST00000562425 CCDC180Q9P1Z9 1646 aa35.12■■■■□ 3.21
PKD1-226ENST00000562425 RB1CC1Q8TDY2 1594 aa33.5■■■□□ 2.95
PKD1-226ENST00000562425 NACADO15069 1562 aa33.24■■■□□ 2.91
PKD1-226ENST00000562425 DCAF8L2P0C7V8 631 aa33.15■■■□□ 2.9
PKD1-226ENST00000562425 DNAJC5BQ9UF47 199 aa33.12■■■□□ 2.89
PKD1-226ENST00000562425 ZCCHC6Q5VYS8 1495 aaKnown RBP32.93■■■□□ 2.86
PKD1-226ENST00000562425 MYO15BQ96JP2 1530 aa32.89■■■□□ 2.86
PKD1-226ENST00000562425 DCAF1Q9Y4B6 1507 aa32.75■■■□□ 2.83
PKD1-226ENST00000562425 UNC13AQ9UPW8 1703 aa32.68■■■□□ 2.82
PKD1-226ENST00000562425 PABPN1Q86U42 306 aaKnown RBP eCLIP32.65■■■□□ 2.82
PKD1-226ENST00000562425 BICRAQ9NZM4 1560 aa32.46■■■□□ 2.79
PKD1-226ENST00000562425 SHROOM4Q9ULL8 1493 aa32.2■■■□□ 2.75
PKD1-226ENST00000562425 SCRIBQ14160 1630 aa32.03■■■□□ 2.72
PKD1-226ENST00000562425 CC2D2AQ9P2K1 1620 aa31.81■■■□□ 2.68
PKD1-226ENST00000562425 CECR2Q9BXF3 1484 aa31.76■■■□□ 2.67
PKD1-226ENST00000562425 EIF4G1Q04637 1599 aaKnown RBP31.71■■■□□ 2.67
PKD1-226ENST00000562425 BAZ1AQ9NRL2 1556 aaPredicted RBP30.68■■■□□ 2.5
PKD1-226ENST00000562425 DNAJC5Q9H3Z4 198 aa30.68■■■□□ 2.5
PKD1-226ENST00000562425 NCAPD3P42695 1498 aa30.66■■■□□ 2.5
PKD1-226ENST00000562425 SMARCA4P51532 1647 aa30.65■■■□□ 2.5
PKD1-226ENST00000562425 CUX2O14529 1486 aa30.54■■■□□ 2.48
PKD1-226ENST00000562425 ATAD2BQ9ULI0 1458 aa30.52■■■□□ 2.48
PKD1-226ENST00000562425 SMARCA2P51531 1590 aa30.51■■■□□ 2.47
PKD1-226ENST00000562425 MROH2BQ7Z745 1585 aa30.46■■■□□ 2.47
PKD1-226ENST00000562425 ERCC6Q03468 1493 aa30.44■■■□□ 2.46
PKD1-226ENST00000562425 HMGXB3Q12766 1538 aa30.44■■■□□ 2.46
PKD1-226ENST00000562425 PEG3Q9GZU2 1588 aa30.37■■■□□ 2.45
PKD1-226ENST00000562425 BAZ1BQ9UIG0 1483 aaKnown RBP30.29■■■□□ 2.44
PKD1-226ENST00000562425 RSF1Q96T23 1441 aaPredicted RBP30.16■■■□□ 2.42
PKD1-226ENST00000562425 NESP48681 1621 aa30.13■■■□□ 2.41
PKD1-226ENST00000562425 WIZO95785 1651 aa30.11■■■□□ 2.41
PKD1-226ENST00000562425 LAMC3Q9Y6N6 1575 aa30.03■■■□□ 2.4
PKD1-226ENST00000562425 THOC2Q8NI27 1593 aaKnown RBP29.96■■■□□ 2.39
PKD1-226ENST00000562425 PDS5BQ9NTI5 1447 aa29.85■■■□□ 2.37
PKD1-226ENST00000562425 TOP2AP11388 1531 aaKnown RBP29.83■■■□□ 2.37
PKD1-226ENST00000562425 KIF21AQ7Z4S6 1674 aa29.79■■■□□ 2.36
PKD1-226ENST00000562425 CADPSQ9ULU8 1353 aa29.69■■■□□ 2.34
PKD1-226ENST00000562425 MRC2Q9UBG0 1479 aa29.58■■■□□ 2.33
PKD1-226ENST00000562425 WDR62O43379 1518 aa29.53■■■□□ 2.32
PKD1-226ENST00000562425 CCDC88BA6NC98 1476 aa29.5■■■□□ 2.31
PKD1-226ENST00000562425 SUPT5HO00267 1087 aaKnown RBP29.5■■■□□ 2.31
PKD1-226ENST00000562425 CFTRP13569 1480 aa29.46■■■□□ 2.31
PKD1-226ENST00000562425 CEP164Q9UPV0 1460 aa29.42■■■□□ 2.3
PKD1-226ENST00000562425 FANCD2Q9BXW9 1451 aa29.35■■■□□ 2.29
PKD1-226ENST00000562425 TRIM41Q8WV44 630 aa29.14■■■□□ 2.26
PKD1-226ENST00000562425 PRDM2Q13029 1718 aa29.13■■■□□ 2.25
PKD1-226ENST00000562425 URB2Q14146 1524 aaKnown RBP29.1■■■□□ 2.25
PKD1-226ENST00000562425 OSCARQ8IYS5 282 aa29.03■■■□□ 2.24
PKD1-226ENST00000562425 ABCC8Q09428 1581 aa28.88■■■□□ 2.21
PKD1-226ENST00000562425 IFT140Q96RY7 1462 aa28.86■■■□□ 2.21
PKD1-226ENST00000562425 TOPBP1Q92547 1522 aa28.8■■■□□ 2.2
PKD1-226ENST00000562425 DNMBPQ6XZF7 1577 aa28.77■■■□□ 2.2
PKD1-226ENST00000562425 ZNF608Q9ULD9 1512 aaPredicted RBP28.74■■■□□ 2.19
PKD1-226ENST00000562425 RIMBP3CA6NJZ7 1639 aa28.67■■■□□ 2.18
PKD1-226ENST00000562425 RIMBP3BA6NNM3 1639 aa28.67■■■□□ 2.18
PKD1-226ENST00000562425 RIMBP3Q9UFD9 1639 aa28.67■■■□□ 2.18
PKD1-226ENST00000562425 EIF4G3O43432 1585 aaKnown RBP28.62■■■□□ 2.17
PKD1-226ENST00000562425 ARHGEF11O15085 1522 aa28.57■■■□□ 2.16
PKD1-226ENST00000562425 CUX1P39880 1505 aa28.57■■■□□ 2.16
PKD1-226ENST00000562425 POLA1P09884 1462 aaPredicted RBP28.56■■■□□ 2.16
PKD1-226ENST00000562425 TARBP1Q13395 1621 aaKnown RBP28.53■■■□□ 2.16
PKD1-226ENST00000562425 SOGA1O94964 1423 aa28.51■■■□□ 2.15
PKD1-226ENST00000562425 FGD5Q6ZNL6 1462 aa28.5■■■□□ 2.15
PKD1-226ENST00000562425 WRNQ14191 1432 aaPredicted RBP eCLIP28.47■■■□□ 2.15
PKD1-226ENST00000562425 AQRO60306 1485 aaKnown RBP eCLIP28.45■■■□□ 2.141e-6■■■■■ 33.9
PKD1-226ENST00000562425 CHD1O14646 1710 aa28.44■■■□□ 2.14
PKD1-226ENST00000562425 RAD54L2Q9Y4B4 1467 aa28.43■■■□□ 2.14
PKD1-226ENST00000562425 WDR97A6NE52 1622 aa28.36■■■□□ 2.13
PKD1-226ENST00000562425 TOP2BQ02880 1626 aa28.35■■■□□ 2.13
PKD1-226ENST00000562425 TDRD9Q8NDG6 1382 aaKnown RBP28.32■■■□□ 2.12
PKD1-226ENST00000562425 BIVM-ERCC5R4GMW8 1640 aa28.32■■■□□ 2.12
PKD1-226ENST00000562425 SYNJ1O43426 1573 aa28.3■■■□□ 2.12
PKD1-226ENST00000562425 CYB5RLQ6IPT4 315 aa28.3■■■□□ 2.12
PKD1-226ENST00000562425 FBLN2P98095 1184 aa28.28■■■□□ 2.12
PKD1-226ENST00000562425 ARAP1Q96P48 1450 aa28.26■■■□□ 2.11
PKD1-226ENST00000562425 ABCA10Q8WWZ4 1543 aa28.23■■■□□ 2.11
PKD1-226ENST00000562425 SNAPC4Q5SXM2 1469 aa28.19■■■□□ 2.1
PKD1-226ENST00000562425 MAGI1Q96QZ7 1491 aaPredicted RBP28.19■■■□□ 2.1
PKD1-226ENST00000562425 GRIN2BQ13224 1484 aa28.15■■■□□ 2.1
PKD1-226ENST00000562425 GAPVD1Q14C86 1478 aa28.15■■■□□ 2.1
PKD1-226ENST00000562425 CLASP1Q7Z460 1538 aa28.14■■■□□ 2.1
PKD1-226ENST00000562425 CHMP7Q8WUX9 453 aaPredicted RBP28.1■■■□□ 2.09
PKD1-226ENST00000562425 SYNJ2O15056 1496 aa28.07■■■□□ 2.08
PKD1-226ENST00000562425 ABCA5Q8WWZ7 1642 aa28.07■■■□□ 2.08
PKD1-226ENST00000562425 TRHP20396 242 aaPredicted RBP28.05■■■□□ 2.08
PKD1-226ENST00000562425 PBRM1Q86U86 1689 aa27.99■■■□□ 2.07
PKD1-226ENST00000562425 ERICH3Q5RHP9 1530 aa27.91■■■□□ 2.06
PKD1-226ENST00000562425 KIF27Q86VH2 1401 aa27.91■■■□□ 2.06
PKD1-226ENST00000562425 FHAD1B1AJZ9 1412 aa27.84■■■□□ 2.05
PKD1-226ENST00000562425 ADAMTS12P58397 1594 aa27.8■■■□□ 2.04
PKD1-226ENST00000562425 GRIN2AQ12879 1464 aa27.76■■■□□ 2.04
PKD1-226ENST00000562425 IGF1RP08069 1367 aa27.76■■■□□ 2.03
PKD1-226ENST00000562425 NUP160Q12769 1436 aa27.69■■■□□ 2.02
PKD1-226ENST00000562425 CUL7Q14999 1698 aa27.64■■■□□ 2.02
PKD1-226ENST00000562425 CEP170Q5SW79 1584 aa27.63■■■□□ 2.01
PKD1-226ENST00000562425 CARMIL1Q5VZK9 1371 aa27.61■■■□□ 2.01
PKD1-226ENST00000562425 SHROOM2Q13796 1616 aa27.6■■■□□ 2.01
PKD1-226ENST00000562425 ERCC6L2Q5T890 1561 aa27.59■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms