RNA–Protein interactions for RNA: ENST00000562404.1

LPCAT4-202, Transcript of lysophosphatidylcholine acyltransferase 4, humanhuman

TSL 3

Gene LPCAT4, Length 577 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LPCAT4-202ENST00000562404 NISCHQ9Y2I1 1504 aa27.5■■□□□ 1.99
LPCAT4-202ENST00000562404 CCDC180Q9P1Z9 1646 aa24.53■■□□□ 1.52
LPCAT4-202ENST00000562404 ABCC9O60706 1549 aa24.23■■□□□ 1.47
LPCAT4-202ENST00000562404 RB1CC1Q8TDY2 1594 aa23.16■■□□□ 1.3
LPCAT4-202ENST00000562404 NACADO15069 1562 aa23.07■■□□□ 1.28
LPCAT4-202ENST00000562404 DCAF8L2P0C7V8 631 aa23.02■■□□□ 1.28
LPCAT4-202ENST00000562404 ZCCHC6Q5VYS8 1495 aaKnown RBP22.86■■□□□ 1.25
LPCAT4-202ENST00000562404 MYO15BQ96JP2 1530 aa22.85■■□□□ 1.25
LPCAT4-202ENST00000562404 UNC13AQ9UPW8 1703 aa22.8■■□□□ 1.24
LPCAT4-202ENST00000562404 DCAF1Q9Y4B6 1507 aa22.7■■□□□ 1.22
LPCAT4-202ENST00000562404 PABPN1Q86U42 306 aaKnown RBP eCLIP22.61■■□□□ 1.21
LPCAT4-202ENST00000562404 BICRAQ9NZM4 1560 aa22.58■■□□□ 1.2
LPCAT4-202ENST00000562404 DNAJC5BQ9UF47 199 aa22.5■■□□□ 1.19
LPCAT4-202ENST00000562404 SCRIBQ14160 1630 aa22.42■■□□□ 1.18
LPCAT4-202ENST00000562404 SHROOM4Q9ULL8 1493 aa22.14■■□□□ 1.13
LPCAT4-202ENST00000562404 EIF4G1Q04637 1599 aaKnown RBP21.94■■□□□ 1.1
LPCAT4-202ENST00000562404 CC2D2AQ9P2K1 1620 aa21.92■■□□□ 1.1
LPCAT4-202ENST00000562404 CECR2Q9BXF3 1484 aa21.76■■□□□ 1.07
LPCAT4-202ENST00000562404 SMARCA4P51532 1647 aa21.4■■□□□ 1.02
LPCAT4-202ENST00000562404 ATAD2BQ9ULI0 1458 aa21.32■■□□□ 1
LPCAT4-202ENST00000562404 NCAPD3P42695 1498 aa21.31■■□□□ 1
LPCAT4-202ENST00000562404 BAZ1AQ9NRL2 1556 aaPredicted RBP21.29■■□□□ 1
LPCAT4-202ENST00000562404 SMARCA2P51531 1590 aa21.23■□□□□ 0.99
LPCAT4-202ENST00000562404 MROH2BQ7Z745 1585 aa21.23■□□□□ 0.99
LPCAT4-202ENST00000562404 HMGXB3Q12766 1538 aa21.19■□□□□ 0.98
LPCAT4-202ENST00000562404 PEG3Q9GZU2 1588 aa21.18■□□□□ 0.98
LPCAT4-202ENST00000562404 BAZ1BQ9UIG0 1483 aaKnown RBP21.1■□□□□ 0.97
LPCAT4-202ENST00000562404 WIZO95785 1651 aa21.02■□□□□ 0.96
LPCAT4-202ENST00000562404 NESP48681 1621 aa20.95■□□□□ 0.94
LPCAT4-202ENST00000562404 RSF1Q96T23 1441 aaPredicted RBP20.87■□□□□ 0.93
LPCAT4-202ENST00000562404 ERCC6Q03468 1493 aa20.82■□□□□ 0.92
LPCAT4-202ENST00000562404 LAMC3Q9Y6N6 1575 aa20.78■□□□□ 0.92
LPCAT4-202ENST00000562404 KIF21AQ7Z4S6 1674 aa20.72■□□□□ 0.91
LPCAT4-202ENST00000562404 TOP2AP11388 1531 aaKnown RBP20.71■□□□□ 0.91
LPCAT4-202ENST00000562404 CUX2O14529 1486 aa20.68■□□□□ 0.9
LPCAT4-202ENST00000562404 CADPSQ9ULU8 1353 aa20.67■□□□□ 0.9
LPCAT4-202ENST00000562404 THOC2Q8NI27 1593 aaKnown RBP20.67■□□□□ 0.9
LPCAT4-202ENST00000562404 PDS5BQ9NTI5 1447 aa20.6■□□□□ 0.89
LPCAT4-202ENST00000562404 CFTRP13569 1480 aa20.52■□□□□ 0.88
LPCAT4-202ENST00000562404 CCDC88BA6NC98 1476 aa20.49■□□□□ 0.87
LPCAT4-202ENST00000562404 FANCD2Q9BXW9 1451 aa20.44■□□□□ 0.86
LPCAT4-202ENST00000562404 MRC2Q9UBG0 1479 aa20.44■□□□□ 0.86
LPCAT4-202ENST00000562404 CEP164Q9UPV0 1460 aa20.42■□□□□ 0.86
LPCAT4-202ENST00000562404 PRDM2Q13029 1718 aa20.41■□□□□ 0.86
LPCAT4-202ENST00000562404 WDR62O43379 1518 aa20.41■□□□□ 0.86
LPCAT4-202ENST00000562404 DNAJC5Q9H3Z4 198 aa20.32■□□□□ 0.84
LPCAT4-202ENST00000562404 URB2Q14146 1524 aaKnown RBP20.31■□□□□ 0.84
LPCAT4-202ENST00000562404 SUPT5HO00267 1087 aaKnown RBP20.17■□□□□ 0.82
LPCAT4-202ENST00000562404 TOPBP1Q92547 1522 aa20.12■□□□□ 0.81
LPCAT4-202ENST00000562404 DNMBPQ6XZF7 1577 aa20.07■□□□□ 0.8
LPCAT4-202ENST00000562404 ZNF608Q9ULD9 1512 aaPredicted RBP20.01■□□□□ 0.79
LPCAT4-202ENST00000562404 ABCC8Q09428 1581 aa20■□□□□ 0.79
LPCAT4-202ENST00000562404 IFT140Q96RY7 1462 aa19.99■□□□□ 0.79
LPCAT4-202ENST00000562404 TARBP1Q13395 1621 aaKnown RBP19.95■□□□□ 0.78
LPCAT4-202ENST00000562404 POLA1P09884 1462 aaPredicted RBP19.94■□□□□ 0.78
LPCAT4-202ENST00000562404 CUX1P39880 1505 aa19.92■□□□□ 0.78
LPCAT4-202ENST00000562404 EIF4G3O43432 1585 aaKnown RBP19.91■□□□□ 0.78
LPCAT4-202ENST00000562404 RAD54L2Q9Y4B4 1467 aa19.88■□□□□ 0.77
LPCAT4-202ENST00000562404 FGD5Q6ZNL6 1462 aa19.86■□□□□ 0.77
LPCAT4-202ENST00000562404 AQRO60306 1485 aaKnown RBP eCLIP19.85■□□□□ 0.77
LPCAT4-202ENST00000562404 SOGA1O94964 1423 aa19.82■□□□□ 0.76
LPCAT4-202ENST00000562404 OSCARQ8IYS5 282 aa19.77■□□□□ 0.76
LPCAT4-202ENST00000562404 WDR97A6NE52 1622 aa19.76■□□□□ 0.75
LPCAT4-202ENST00000562404 TDRD9Q8NDG6 1382 aaKnown RBP19.76■□□□□ 0.75
LPCAT4-202ENST00000562404 CHD1O14646 1710 aa19.74■□□□□ 0.75
LPCAT4-202ENST00000562404 SYNJ1O43426 1573 aa19.7■□□□□ 0.74
LPCAT4-202ENST00000562404 BIVM-ERCC5R4GMW8 1640 aa19.69■□□□□ 0.74
LPCAT4-202ENST00000562404 TOP2BQ02880 1626 aa19.67■□□□□ 0.74
LPCAT4-202ENST00000562404 WRNQ14191 1432 aaPredicted RBP eCLIP19.65■□□□□ 0.74
LPCAT4-202ENST00000562404 SNAPC4Q5SXM2 1469 aa19.64■□□□□ 0.73
LPCAT4-202ENST00000562404 PBRM1Q86U86 1689 aa19.64■□□□□ 0.73
LPCAT4-202ENST00000562404 ABCA10Q8WWZ4 1543 aa19.63■□□□□ 0.73
LPCAT4-202ENST00000562404 ABCA5Q8WWZ7 1642 aa19.62■□□□□ 0.73
LPCAT4-202ENST00000562404 GRIN2BQ13224 1484 aa19.6■□□□□ 0.73
LPCAT4-202ENST00000562404 GAPVD1Q14C86 1478 aa19.59■□□□□ 0.73
LPCAT4-202ENST00000562404 RIMBP3CA6NJZ7 1639 aa19.58■□□□□ 0.73
LPCAT4-202ENST00000562404 RIMBP3BA6NNM3 1639 aa19.58■□□□□ 0.73
LPCAT4-202ENST00000562404 RIMBP3Q9UFD9 1639 aa19.58■□□□□ 0.73
LPCAT4-202ENST00000562404 FBLN2P98095 1184 aa19.58■□□□□ 0.72
LPCAT4-202ENST00000562404 TRIM41Q8WV44 630 aa19.57■□□□□ 0.72
LPCAT4-202ENST00000562404 MAGI1Q96QZ7 1491 aaPredicted RBP19.56■□□□□ 0.72
LPCAT4-202ENST00000562404 ARHGEF11O15085 1522 aa19.52■□□□□ 0.72
LPCAT4-202ENST00000562404 SYNJ2O15056 1496 aa19.5■□□□□ 0.71
LPCAT4-202ENST00000562404 CHMP7Q8WUX9 453 aaPredicted RBP19.48■□□□□ 0.71
LPCAT4-202ENST00000562404 CLASP1Q7Z460 1538 aa19.47■□□□□ 0.71
LPCAT4-202ENST00000562404 ADAMTS12P58397 1594 aa19.43■□□□□ 0.7
LPCAT4-202ENST00000562404 ERICH3Q5RHP9 1530 aa19.38■□□□□ 0.69
LPCAT4-202ENST00000562404 ARAP1Q96P48 1450 aa19.38■□□□□ 0.69
LPCAT4-202ENST00000562404 GRIN2AQ12879 1464 aa19.37■□□□□ 0.69
LPCAT4-202ENST00000562404 CEP170Q5SW79 1584 aa19.34■□□□□ 0.69
LPCAT4-202ENST00000562404 CYB5RLQ6IPT4 315 aa19.33■□□□□ 0.68
LPCAT4-202ENST00000562404 FHAD1B1AJZ9 1412 aa19.33■□□□□ 0.68
LPCAT4-202ENST00000562404 NUP160Q12769 1436 aa19.3■□□□□ 0.68
LPCAT4-202ENST00000562404 ERCC6L2Q5T890 1561 aa19.26■□□□□ 0.67
LPCAT4-202ENST00000562404 IGF1RP08069 1367 aa19.22■□□□□ 0.67
LPCAT4-202ENST00000562404 KIF27Q86VH2 1401 aa19.22■□□□□ 0.67
LPCAT4-202ENST00000562404 SHROOM2Q13796 1616 aa19.22■□□□□ 0.67
LPCAT4-202ENST00000562404 CUL7Q14999 1698 aa19.17■□□□□ 0.66
LPCAT4-202ENST00000562404 RUSC2Q8N2Y8 1516 aa19.16■□□□□ 0.66
LPCAT4-202ENST00000562404 CARMIL1Q5VZK9 1371 aa19.08■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 270 ms