RNA–Protein interactions for RNA: ENST00000562039.1

NSMCE1-203, Transcript of NSE1 homolog, SMC5-SMC6 complex component, humanhuman

TSL 3

Gene NSMCE1, Length 260 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NSMCE1-203ENST00000562039 NISCHQ9Y2I1 1504 aa23.21■■□□□ 1.31
NSMCE1-203ENST00000562039 CCDC180Q9P1Z9 1646 aa20.63■□□□□ 0.89
NSMCE1-203ENST00000562039 ABCC9O60706 1549 aa20.59■□□□□ 0.89
NSMCE1-203ENST00000562039 DCAF8L2P0C7V8 631 aa19.72■□□□□ 0.75
NSMCE1-203ENST00000562039 RB1CC1Q8TDY2 1594 aa19.57■□□□□ 0.72
NSMCE1-203ENST00000562039 NACADO15069 1562 aa19.46■□□□□ 0.71
NSMCE1-203ENST00000562039 PABPN1Q86U42 306 aaKnown RBP eCLIP19.28■□□□□ 0.68
NSMCE1-203ENST00000562039 ZCCHC6Q5VYS8 1495 aaKnown RBP19.28■□□□□ 0.68
NSMCE1-203ENST00000562039 MYO15BQ96JP2 1530 aa19.18■□□□□ 0.66
NSMCE1-203ENST00000562039 UNC13AQ9UPW8 1703 aa19.17■□□□□ 0.66
NSMCE1-203ENST00000562039 DNAJC5BQ9UF47 199 aa19.11■□□□□ 0.65
NSMCE1-203ENST00000562039 DCAF1Q9Y4B6 1507 aa19.06■□□□□ 0.64
NSMCE1-203ENST00000562039 BICRAQ9NZM4 1560 aa19.02■□□□□ 0.63
NSMCE1-203ENST00000562039 SCRIBQ14160 1630 aa19■□□□□ 0.63
NSMCE1-203ENST00000562039 SHROOM4Q9ULL8 1493 aa18.62■□□□□ 0.57
NSMCE1-203ENST00000562039 CC2D2AQ9P2K1 1620 aa18.54■□□□□ 0.56
NSMCE1-203ENST00000562039 EIF4G1Q04637 1599 aaKnown RBP18.54■□□□□ 0.56
NSMCE1-203ENST00000562039 CECR2Q9BXF3 1484 aa18.46■□□□□ 0.54
NSMCE1-203ENST00000562039 SMARCA4P51532 1647 aa18.05■□□□□ 0.48
NSMCE1-203ENST00000562039 ATAD2BQ9ULI0 1458 aa18.01■□□□□ 0.47
NSMCE1-203ENST00000562039 NCAPD3P42695 1498 aa17.98■□□□□ 0.47
NSMCE1-203ENST00000562039 BAZ1AQ9NRL2 1556 aaPredicted RBP17.97■□□□□ 0.47
NSMCE1-203ENST00000562039 MROH2BQ7Z745 1585 aa17.95■□□□□ 0.46
NSMCE1-203ENST00000562039 SMARCA2P51531 1590 aa17.92■□□□□ 0.46
NSMCE1-203ENST00000562039 BAZ1BQ9UIG0 1483 aaKnown RBP17.88■□□□□ 0.45
NSMCE1-203ENST00000562039 HMGXB3Q12766 1538 aa17.85■□□□□ 0.45
NSMCE1-203ENST00000562039 PEG3Q9GZU2 1588 aa17.79■□□□□ 0.44
NSMCE1-203ENST00000562039 NESP48681 1621 aa17.76■□□□□ 0.43
NSMCE1-203ENST00000562039 WIZO95785 1651 aa17.76■□□□□ 0.43
NSMCE1-203ENST00000562039 ERCC6Q03468 1493 aa17.72■□□□□ 0.43
NSMCE1-203ENST00000562039 RSF1Q96T23 1441 aaPredicted RBP17.64■□□□□ 0.42
NSMCE1-203ENST00000562039 LAMC3Q9Y6N6 1575 aa17.53■□□□□ 0.4
NSMCE1-203ENST00000562039 CADPSQ9ULU8 1353 aa17.5■□□□□ 0.39
NSMCE1-203ENST00000562039 CUX2O14529 1486 aa17.49■□□□□ 0.39
NSMCE1-203ENST00000562039 KIF21AQ7Z4S6 1674 aa17.48■□□□□ 0.39
NSMCE1-203ENST00000562039 TOP2AP11388 1531 aaKnown RBP17.48■□□□□ 0.39
NSMCE1-203ENST00000562039 PDS5BQ9NTI5 1447 aa17.46■□□□□ 0.39
NSMCE1-203ENST00000562039 THOC2Q8NI27 1593 aaKnown RBP17.43■□□□□ 0.38
NSMCE1-203ENST00000562039 CCDC88BA6NC98 1476 aa17.33■□□□□ 0.37
NSMCE1-203ENST00000562039 CFTRP13569 1480 aa17.32■□□□□ 0.36
NSMCE1-203ENST00000562039 FANCD2Q9BXW9 1451 aa17.32■□□□□ 0.36
NSMCE1-203ENST00000562039 MRC2Q9UBG0 1479 aa17.31■□□□□ 0.36
NSMCE1-203ENST00000562039 CEP164Q9UPV0 1460 aa17.31■□□□□ 0.36
NSMCE1-203ENST00000562039 DNAJC5Q9H3Z4 198 aa17.26■□□□□ 0.35
NSMCE1-203ENST00000562039 SUPT5HO00267 1087 aaKnown RBP17.24■□□□□ 0.35
NSMCE1-203ENST00000562039 WDR62O43379 1518 aa17.22■□□□□ 0.35
NSMCE1-203ENST00000562039 URB2Q14146 1524 aaKnown RBP17.17■□□□□ 0.34
NSMCE1-203ENST00000562039 PRDM2Q13029 1718 aa17.14■□□□□ 0.33
NSMCE1-203ENST00000562039 TOPBP1Q92547 1522 aa17.02■□□□□ 0.32
NSMCE1-203ENST00000562039 ZNF608Q9ULD9 1512 aaPredicted RBP16.96■□□□□ 0.3
NSMCE1-203ENST00000562039 DNMBPQ6XZF7 1577 aa16.94■□□□□ 0.3
NSMCE1-203ENST00000562039 IFT140Q96RY7 1462 aa16.93■□□□□ 0.3
NSMCE1-203ENST00000562039 ABCC8Q09428 1581 aa16.9■□□□□ 0.3
NSMCE1-203ENST00000562039 RAD54L2Q9Y4B4 1467 aa16.87■□□□□ 0.29
NSMCE1-203ENST00000562039 POLA1P09884 1462 aaPredicted RBP16.86■□□□□ 0.29
NSMCE1-203ENST00000562039 AQRO60306 1485 aaKnown RBP eCLIP16.85■□□□□ 0.29
NSMCE1-203ENST00000562039 CUX1P39880 1505 aa16.83■□□□□ 0.28
NSMCE1-203ENST00000562039 EIF4G3O43432 1585 aaKnown RBP16.82■□□□□ 0.28
NSMCE1-203ENST00000562039 FGD5Q6ZNL6 1462 aa16.82■□□□□ 0.28
NSMCE1-203ENST00000562039 OSCARQ8IYS5 282 aa16.82■□□□□ 0.28
NSMCE1-203ENST00000562039 TARBP1Q13395 1621 aaKnown RBP16.81■□□□□ 0.28
NSMCE1-203ENST00000562039 SOGA1O94964 1423 aa16.81■□□□□ 0.28
NSMCE1-203ENST00000562039 TDRD9Q8NDG6 1382 aaKnown RBP16.8■□□□□ 0.28
NSMCE1-203ENST00000562039 TRIM41Q8WV44 630 aa16.79■□□□□ 0.28
NSMCE1-203ENST00000562039 FBLN2P98095 1184 aa16.77■□□□□ 0.28
NSMCE1-203ENST00000562039 CHD1O14646 1710 aa16.67■□□□□ 0.26
NSMCE1-203ENST00000562039 SNAPC4Q5SXM2 1469 aa16.66■□□□□ 0.26
NSMCE1-203ENST00000562039 WRNQ14191 1432 aaPredicted RBP eCLIP16.64■□□□□ 0.25
NSMCE1-203ENST00000562039 SYNJ1O43426 1573 aa16.64■□□□□ 0.25
NSMCE1-203ENST00000562039 WDR97A6NE52 1622 aa16.61■□□□□ 0.25
NSMCE1-203ENST00000562039 CHMP7Q8WUX9 453 aaPredicted RBP16.6■□□□□ 0.25
NSMCE1-203ENST00000562039 GRIN2BQ13224 1484 aa16.6■□□□□ 0.25
NSMCE1-203ENST00000562039 GAPVD1Q14C86 1478 aa16.59■□□□□ 0.25
NSMCE1-203ENST00000562039 ABCA10Q8WWZ4 1543 aa16.58■□□□□ 0.24
NSMCE1-203ENST00000562039 TOP2BQ02880 1626 aa16.58■□□□□ 0.24
NSMCE1-203ENST00000562039 RIMBP3CA6NJZ7 1639 aa16.57■□□□□ 0.24
NSMCE1-203ENST00000562039 RIMBP3BA6NNM3 1639 aa16.57■□□□□ 0.24
NSMCE1-203ENST00000562039 RIMBP3Q9UFD9 1639 aa16.57■□□□□ 0.24
NSMCE1-203ENST00000562039 BIVM-ERCC5R4GMW8 1640 aa16.57■□□□□ 0.24
NSMCE1-203ENST00000562039 PBRM1Q86U86 1689 aa16.56■□□□□ 0.24
NSMCE1-203ENST00000562039 ARHGEF11O15085 1522 aa16.54■□□□□ 0.24
NSMCE1-203ENST00000562039 ABCA5Q8WWZ7 1642 aa16.53■□□□□ 0.24
NSMCE1-203ENST00000562039 MAGI1Q96QZ7 1491 aaPredicted RBP16.53■□□□□ 0.24
NSMCE1-203ENST00000562039 SYNJ2O15056 1496 aa16.5■□□□□ 0.23
NSMCE1-203ENST00000562039 CYB5RLQ6IPT4 315 aa16.5■□□□□ 0.23
NSMCE1-203ENST00000562039 CLASP1Q7Z460 1538 aa16.43■□□□□ 0.22
NSMCE1-203ENST00000562039 ADAMTS12P58397 1594 aa16.42■□□□□ 0.22
NSMCE1-203ENST00000562039 ARAP1Q96P48 1450 aa16.41■□□□□ 0.22
NSMCE1-203ENST00000562039 GRIN2AQ12879 1464 aa16.39■□□□□ 0.21
NSMCE1-203ENST00000562039 FHAD1B1AJZ9 1412 aa16.36■□□□□ 0.21
NSMCE1-203ENST00000562039 CEP170Q5SW79 1584 aa16.35■□□□□ 0.21
NSMCE1-203ENST00000562039 ERICH3Q5RHP9 1530 aa16.35■□□□□ 0.21
NSMCE1-203ENST00000562039 ERCC6L2Q5T890 1561 aa16.3■□□□□ 0.2
NSMCE1-203ENST00000562039 NUP160Q12769 1436 aa16.29■□□□□ 0.2
NSMCE1-203ENST00000562039 KIF27Q86VH2 1401 aa16.29■□□□□ 0.2
NSMCE1-203ENST00000562039 IGF1RP08069 1367 aa16.27■□□□□ 0.2
NSMCE1-203ENST00000562039 TRHP20396 242 aaPredicted RBP16.26■□□□□ 0.19
NSMCE1-203ENST00000562039 RUSC2Q8N2Y8 1516 aa16.21■□□□□ 0.19
NSMCE1-203ENST00000562039 JPH4Q96JJ6 628 aa16.2■□□□□ 0.18
NSMCE1-203ENST00000562039 PRG4Q92954 1404 aaPredicted RBP16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 183.7 ms