RNA–Protein interactions for RNA: ENST00000561662.1

COMMD4-204, Transcript of COMM domain containing 4, humanhuman

TSL 3

Gene COMMD4, Length 482 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-204ENST00000561662 NISCHQ9Y2I1 1504 aa46.46■■■■■ 5.03
COMMD4-204ENST00000561662 ABCC9O60706 1549 aa42.74■■■■■ 4.43
COMMD4-204ENST00000561662 CCDC180Q9P1Z9 1646 aa41.85■■■■■ 4.29
COMMD4-204ENST00000561662 DNAJC5BQ9UF47 199 aa40.72■■■■■ 4.11
COMMD4-204ENST00000561662 RB1CC1Q8TDY2 1594 aa40.23■■■■■ 4.03
COMMD4-204ENST00000561662 PABPN1Q86U42 306 aaKnown RBP eCLIP39.77■■■■□ 3.96
COMMD4-204ENST00000561662 DCAF8L2P0C7V8 631 aa39.76■■■■□ 3.96
COMMD4-204ENST00000561662 NACADO15069 1562 aa39.76■■■■□ 3.95
COMMD4-204ENST00000561662 UNC13AQ9UPW8 1703 aa39.35■■■■□ 3.89
COMMD4-204ENST00000561662 BICRAQ9NZM4 1560 aa39.14■■■■□ 3.86
COMMD4-204ENST00000561662 MYO15BQ96JP2 1530 aa38.89■■■■□ 3.82
COMMD4-204ENST00000561662 CECR2Q9BXF3 1484 aa38.51■■■■□ 3.76
COMMD4-204ENST00000561662 CC2D2AQ9P2K1 1620 aa38.49■■■■□ 3.75
COMMD4-204ENST00000561662 ZCCHC6Q5VYS8 1495 aaKnown RBP38.35■■■■□ 3.73
COMMD4-204ENST00000561662 SHROOM4Q9ULL8 1493 aa38.34■■■■□ 3.73
COMMD4-204ENST00000561662 SCRIBQ14160 1630 aa38.31■■■■□ 3.72
COMMD4-204ENST00000561662 EIF4G1Q04637 1599 aaKnown RBP38.23■■■■□ 3.71
COMMD4-204ENST00000561662 DCAF1Q9Y4B6 1507 aa38.19■■■■□ 3.7
COMMD4-204ENST00000561662 DNAJC5Q9H3Z4 198 aa37.73■■■■□ 3.63
COMMD4-204ENST00000561662 CUX2O14529 1486 aa36.93■■■■□ 3.5
COMMD4-204ENST00000561662 ERCC6Q03468 1493 aa36.91■■■■□ 3.5
COMMD4-204ENST00000561662 NCAPD3P42695 1498 aa36.74■■■■□ 3.47
COMMD4-204ENST00000561662 ATAD2BQ9ULI0 1458 aa36.6■■■■□ 3.45
COMMD4-204ENST00000561662 NESP48681 1621 aa36.55■■■■□ 3.44
COMMD4-204ENST00000561662 SMARCA2P51531 1590 aa36.4■■■■□ 3.42
COMMD4-204ENST00000561662 HMGXB3Q12766 1538 aa36.39■■■■□ 3.42
COMMD4-204ENST00000561662 SMARCA4P51532 1647 aa36.38■■■■□ 3.41
COMMD4-204ENST00000561662 BAZ1BQ9UIG0 1483 aaKnown RBP36.23■■■■□ 3.39
COMMD4-204ENST00000561662 THOC2Q8NI27 1593 aaKnown RBP36.18■■■■□ 3.38
COMMD4-204ENST00000561662 BAZ1AQ9NRL2 1556 aaPredicted RBP36.06■■■■□ 3.36
COMMD4-204ENST00000561662 TRIM41Q8WV44 630 aa36■■■■□ 3.35
COMMD4-204ENST00000561662 LAMC3Q9Y6N6 1575 aa35.99■■■■□ 3.35
COMMD4-204ENST00000561662 KIF21AQ7Z4S6 1674 aa35.97■■■■□ 3.35
COMMD4-204ENST00000561662 PEG3Q9GZU2 1588 aa35.93■■■■□ 3.34
COMMD4-204ENST00000561662 MROH2BQ7Z745 1585 aa35.87■■■■□ 3.33
COMMD4-204ENST00000561662 PDS5BQ9NTI5 1447 aa35.85■■■■□ 3.33
COMMD4-204ENST00000561662 CADPSQ9ULU8 1353 aa35.64■■■■□ 3.3
COMMD4-204ENST00000561662 MRC2Q9UBG0 1479 aa35.61■■■■□ 3.29
COMMD4-204ENST00000561662 WDR62O43379 1518 aa35.51■■■■□ 3.27
COMMD4-204ENST00000561662 WIZO95785 1651 aa35.41■■■■□ 3.26
COMMD4-204ENST00000561662 CEP164Q9UPV0 1460 aa35.35■■■■□ 3.25
COMMD4-204ENST00000561662 FANCD2Q9BXW9 1451 aa35.28■■■■□ 3.24
COMMD4-204ENST00000561662 OSCARQ8IYS5 282 aa35.23■■■■□ 3.23
COMMD4-204ENST00000561662 CFTRP13569 1480 aa35.08■■■■□ 3.21
COMMD4-204ENST00000561662 URB2Q14146 1524 aaKnown RBP35.05■■■■□ 3.2
COMMD4-204ENST00000561662 RSF1Q96T23 1441 aaPredicted RBP34.87■■■■□ 3.17
COMMD4-204ENST00000561662 RIMBP3CA6NJZ7 1639 aa34.84■■■■□ 3.17
COMMD4-204ENST00000561662 RIMBP3BA6NNM3 1639 aa34.84■■■■□ 3.17
COMMD4-204ENST00000561662 RIMBP3Q9UFD9 1639 aa34.84■■■■□ 3.17
COMMD4-204ENST00000561662 TOP2AP11388 1531 aaKnown RBP34.84■■■■□ 3.17
COMMD4-204ENST00000561662 ZNF608Q9ULD9 1512 aaPredicted RBP34.76■■■■□ 3.16
COMMD4-204ENST00000561662 ARHGEF11O15085 1522 aa34.66■■■■□ 3.14
COMMD4-204ENST00000561662 IFT140Q96RY7 1462 aa34.64■■■■□ 3.14
COMMD4-204ENST00000561662 PRDM2Q13029 1718 aa34.59■■■■□ 3.13
COMMD4-204ENST00000561662 CYB5RLQ6IPT4 315 aa34.56■■■■□ 3.12
COMMD4-204ENST00000561662 TOPBP1Q92547 1522 aa34.52■■■■□ 3.12
COMMD4-204ENST00000561662 CCDC88BA6NC98 1476 aa34.52■■■■□ 3.12
COMMD4-204ENST00000561662 EIF4G3O43432 1585 aaKnown RBP34.46■■■■□ 3.11
COMMD4-204ENST00000561662 TRHP20396 242 aaPredicted RBP34.41■■■■□ 3.1
COMMD4-204ENST00000561662 AQRO60306 1485 aaKnown RBP eCLIP34.38■■■■□ 3.09
COMMD4-204ENST00000561662 FBLN2P98095 1184 aa34.36■■■■□ 3.09
COMMD4-204ENST00000561662 CHD1O14646 1710 aa34.34■■■■□ 3.09
COMMD4-204ENST00000561662 ARAP1Q96P48 1450 aa34.3■■■■□ 3.08
COMMD4-204ENST00000561662 DNMBPQ6XZF7 1577 aa34.3■■■■□ 3.08
COMMD4-204ENST00000561662 ABCC8Q09428 1581 aa34.28■■■■□ 3.08
COMMD4-204ENST00000561662 TARBP1Q13395 1621 aaKnown RBP34.24■■■■□ 3.07
COMMD4-204ENST00000561662 POLA1P09884 1462 aaPredicted RBP34.14■■■■□ 3.06
COMMD4-204ENST00000561662 RAD54L2Q9Y4B4 1467 aa34.11■■■■□ 3.05
COMMD4-204ENST00000561662 TDRD9Q8NDG6 1382 aaKnown RBP34.08■■■■□ 3.05
COMMD4-204ENST00000561662 SOGA1O94964 1423 aa33.98■■■■□ 3.03
COMMD4-204ENST00000561662 SNAPC4Q5SXM2 1469 aa33.97■■■■□ 3.03
COMMD4-204ENST00000561662 CHMP7Q8WUX9 453 aaPredicted RBP33.9■■■■□ 3.02
COMMD4-204ENST00000561662 CLASP1Q7Z460 1538 aa33.89■■■■□ 3.02
COMMD4-204ENST00000561662 FGD5Q6ZNL6 1462 aa33.86■■■■□ 3.01
COMMD4-204ENST00000561662 AEBP2Q6ZN18 517 aaPredicted RBP33.84■■■■□ 3.01
COMMD4-204ENST00000561662 SYNJ1O43426 1573 aa33.8■■■■□ 3
COMMD4-204ENST00000561662 MAGI1Q96QZ7 1491 aaPredicted RBP33.75■■■□□ 2.99
COMMD4-204ENST00000561662 CUX1P39880 1505 aa33.73■■■□□ 2.99
COMMD4-204ENST00000561662 GRIN2BQ13224 1484 aa33.72■■■□□ 2.99
COMMD4-204ENST00000561662 WDR97A6NE52 1622 aa33.68■■■□□ 2.98
COMMD4-204ENST00000561662 SYNJ2O15056 1496 aa33.68■■■□□ 2.98
COMMD4-204ENST00000561662 GAPVD1Q14C86 1478 aa33.63■■■□□ 2.97
COMMD4-204ENST00000561662 PBRM1Q86U86 1689 aa33.54■■■□□ 2.96
COMMD4-204ENST00000561662 ERCC6L2Q5T890 1561 aa33.44■■■□□ 2.94
COMMD4-204ENST00000561662 ABCA5Q8WWZ7 1642 aa33.37■■■□□ 2.93
COMMD4-204ENST00000561662 ABCA10Q8WWZ4 1543 aa33.36■■■□□ 2.93
COMMD4-204ENST00000561662 GRIN2AQ12879 1464 aa33.3■■■□□ 2.92
COMMD4-204ENST00000561662 CEP170Q5SW79 1584 aa33.26■■■□□ 2.91
COMMD4-204ENST00000561662 ADAMTS12P58397 1594 aa33.19■■■□□ 2.9
COMMD4-204ENST00000561662 NUP160Q12769 1436 aa33.19■■■□□ 2.9
COMMD4-204ENST00000561662 WRNQ14191 1432 aaPredicted RBP eCLIP33.13■■■□□ 2.89
COMMD4-204ENST00000561662 SHROOM2Q13796 1616 aa33.08■■■□□ 2.89
COMMD4-204ENST00000561662 FHAD1B1AJZ9 1412 aa33.06■■■□□ 2.88
COMMD4-204ENST00000561662 SUPT5HO00267 1087 aaKnown RBP33.04■■■□□ 2.88
COMMD4-204ENST00000561662 KIF13AQ9H1H9 1805 aa33.04■■■□□ 2.88
COMMD4-204ENST00000561662 PRG4Q92954 1404 aaPredicted RBP33.01■■■□□ 2.87
COMMD4-204ENST00000561662 TOP2BQ02880 1626 aa32.94■■■□□ 2.86
COMMD4-204ENST00000561662 BIVM-ERCC5R4GMW8 1640 aa32.92■■■□□ 2.86
COMMD4-204ENST00000561662 FAM69CQ0P6D2 419 aa32.91■■■□□ 2.86
COMMD4-204ENST00000561662 JPH4Q96JJ6 628 aa32.91■■■□□ 2.86
Retrieved 100 of 20,778 RNA–protein pairs in 89 ms