RNA–Protein interactions for RNA: ENST00000561609.5

PKM-205, Transcript of pyruvate kinase M1/2, humanhuman

TSL 1 (best)

Gene PKM, Length 1,568 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKM-205ENST00000561609 NISCHQ9Y2I1 1504 aa25.77■■□□□ 1.72
PKM-205ENST00000561609 CCDC180Q9P1Z9 1646 aa22.51■■□□□ 1.19
PKM-205ENST00000561609 ZCCHC6Q5VYS8 1495 aaKnown RBP21.66■■□□□ 1.06
PKM-205ENST00000561609 DCAF1Q9Y4B6 1507 aa21.35■■□□□ 1.01
PKM-205ENST00000561609 ABCC9O60706 1549 aa21.22■□□□□ 0.99
PKM-205ENST00000561609 DCAF8L2P0C7V8 631 aa21.18■□□□□ 0.98
PKM-205ENST00000561609 MYO15BQ96JP2 1530 aa21.1■□□□□ 0.97
PKM-205ENST00000561609 NACADO15069 1562 aa20.95■□□□□ 0.94
PKM-205ENST00000561609 SHROOM4Q9ULL8 1493 aa20.94■□□□□ 0.94
PKM-205ENST00000561609 RB1CC1Q8TDY2 1594 aa20.76■□□□□ 0.91
PKM-205ENST00000561609 SCRIBQ14160 1630 aa20.65■□□□□ 0.9
PKM-205ENST00000561609 UNC13AQ9UPW8 1703 aa20.36■□□□□ 0.85
PKM-205ENST00000561609 BICRAQ9NZM4 1560 aa20.15■□□□□ 0.82
PKM-205ENST00000561609 SUPT5HO00267 1087 aaKnown RBP20.13■□□□□ 0.81
PKM-205ENST00000561609 CECR2Q9BXF3 1484 aa20.01■□□□□ 0.79
PKM-205ENST00000561609 PABPN1Q86U42 306 aaKnown RBP eCLIP19.99■□□□□ 0.79
PKM-205ENST00000561609 RSF1Q96T23 1441 aaPredicted RBP19.98■□□□□ 0.79
PKM-205ENST00000561609 MROH2BQ7Z745 1585 aa19.9■□□□□ 0.78
PKM-205ENST00000561609 BAZ1AQ9NRL2 1556 aaPredicted RBP19.9■□□□□ 0.78
PKM-205ENST00000561609 SMARCA4P51532 1647 aa19.82■□□□□ 0.76
PKM-205ENST00000561609 WIZO95785 1651 aa19.74■□□□□ 0.75
PKM-205ENST00000561609 PEG3Q9GZU2 1588 aa19.6■□□□□ 0.73
PKM-205ENST00000561609 TOP2AP11388 1531 aaKnown RBP19.55■□□□□ 0.72
PKM-205ENST00000561609 EIF4G1Q04637 1599 aaKnown RBP19.53■□□□□ 0.72
PKM-205ENST00000561609 ATAD2BQ9ULI0 1458 aa19.49■□□□□ 0.71
PKM-205ENST00000561609 SMARCA2P51531 1590 aa19.48■□□□□ 0.71
PKM-205ENST00000561609 BAZ1BQ9UIG0 1483 aaKnown RBP19.36■□□□□ 0.69
PKM-205ENST00000561609 CCDC88BA6NC98 1476 aa19.33■□□□□ 0.69
PKM-205ENST00000561609 NCAPD3P42695 1498 aa19.33■□□□□ 0.68
PKM-205ENST00000561609 HMGXB3Q12766 1538 aa19.32■□□□□ 0.68
PKM-205ENST00000561609 CHIC1Q5VXU3 224 aa19.31■□□□□ 0.68
PKM-205ENST00000561609 CC2D2AQ9P2K1 1620 aa19.23■□□□□ 0.67
PKM-205ENST00000561609 TRIM41Q8WV44 630 aa18.95■□□□□ 0.62
PKM-205ENST00000561609 ABCC8Q09428 1581 aa18.91■□□□□ 0.62
PKM-205ENST00000561609 CFTRP13569 1480 aa18.89■□□□□ 0.62
PKM-205ENST00000561609 PRDM2Q13029 1718 aa18.83■□□□□ 0.6
PKM-205ENST00000561609 CADPSQ9ULU8 1353 aa18.82■□□□□ 0.6
PKM-205ENST00000561609 WRNQ14191 1432 aaPredicted RBP eCLIP18.8■□□□□ 0.61e-7■■■■□ 20.9
PKM-205ENST00000561609 SYNJ1O43426 1573 aa18.73■□□□□ 0.59
PKM-205ENST00000561609 DNAJC5BQ9UF47 199 aa18.72■□□□□ 0.59
PKM-205ENST00000561609 LAMC3Q9Y6N6 1575 aa18.68■□□□□ 0.58
PKM-205ENST00000561609 TOP2BQ02880 1626 aa18.67■□□□□ 0.58
PKM-205ENST00000561609 BIVM-ERCC5R4GMW8 1640 aa18.67■□□□□ 0.58
PKM-205ENST00000561609 NESP48681 1621 aa18.64■□□□□ 0.57
PKM-205ENST00000561609 CUX1P39880 1505 aa18.61■□□□□ 0.57
PKM-205ENST00000561609 FANCD2Q9BXW9 1451 aa18.61■□□□□ 0.57
PKM-205ENST00000561609 FAM9AQ8IZU1 332 aaPredicted RBP18.57■□□□□ 0.56
PKM-205ENST00000561609 SOGA1O94964 1423 aa18.55■□□□□ 0.56
PKM-205ENST00000561609 EEA1Q15075 1411 aa18.54■□□□□ 0.56
PKM-205ENST00000561609 LOC105371045A0A1W2PR82 267 aa18.54■□□□□ 0.56
PKM-205ENST00000561609 PDS5BQ9NTI5 1447 aa18.51■□□□□ 0.55
PKM-205ENST00000561609 CEP164Q9UPV0 1460 aa18.49■□□□□ 0.55
PKM-205ENST00000561609 RUSC2Q8N2Y8 1516 aa18.48■□□□□ 0.55
PKM-205ENST00000561609 DNMBPQ6XZF7 1577 aa18.46■□□□□ 0.55
PKM-205ENST00000561609 KIF21AQ7Z4S6 1674 aa18.44■□□□□ 0.54
PKM-205ENST00000561609 TOPBP1Q92547 1522 aa18.42■□□□□ 0.54
PKM-205ENST00000561609 CSRNP3Q8WYN3 585 aa18.4■□□□□ 0.54
PKM-205ENST00000561609 FGD5Q6ZNL6 1462 aa18.4■□□□□ 0.54
PKM-205ENST00000561609 URB2Q14146 1524 aaKnown RBP18.38■□□□□ 0.53
PKM-205ENST00000561609 POLA1P09884 1462 aaPredicted RBP18.32■□□□□ 0.52
PKM-205ENST00000561609 KIF27Q86VH2 1401 aa18.32■□□□□ 0.52
PKM-205ENST00000561609 KIF21BO75037 1637 aa18.31■□□□□ 0.52
PKM-205ENST00000561609 EHMT2Q96KQ7 1210 aa18.28■□□□□ 0.52
PKM-205ENST00000561609 MRC2Q9UBG0 1479 aa18.28■□□□□ 0.52
PKM-205ENST00000561609 CUX2O14529 1486 aa18.27■□□□□ 0.52
PKM-205ENST00000561609 GOLGA3Q08378 1498 aa18.27■□□□□ 0.52
PKM-205ENST00000561609 ABCA10Q8WWZ4 1543 aa18.26■□□□□ 0.51
PKM-205ENST00000561609 RAD54L2Q9Y4B4 1467 aa18.24■□□□□ 0.51
PKM-205ENST00000561609 WDR97A6NE52 1622 aa18.22■□□□□ 0.51
PKM-205ENST00000561609 PRXQ9BXM0 1461 aa18.22■□□□□ 0.51
PKM-205ENST00000561609 TNIKQ9UKE5 1360 aa18.22■□□□□ 0.51
PKM-205ENST00000561609 WDR62O43379 1518 aa18.2■□□□□ 0.5
PKM-205ENST00000561609 ERICH3Q5RHP9 1530 aa18.19■□□□□ 0.5
PKM-205ENST00000561609 ERCC6Q03468 1493 aa18.19■□□□□ 0.5
PKM-205ENST00000561609 RAPGEF2Q9Y4G8 1499 aa18.17■□□□□ 0.5
PKM-205ENST00000561609 IGF1RP08069 1367 aa18.17■□□□□ 0.5
PKM-205ENST00000561609 TARBP1Q13395 1621 aaKnown RBP18.15■□□□□ 0.5
PKM-205ENST00000561609 THOC2Q8NI27 1593 aaKnown RBP18.15■□□□□ 0.5
PKM-205ENST00000561609 UBTFP17480 764 aaKnown RBP18.13■□□□□ 0.49
PKM-205ENST00000561609 ABCA5Q8WWZ7 1642 aa18.12■□□□□ 0.49
PKM-205ENST00000561609 CEP162Q5TB80 1403 aa18.1■□□□□ 0.49
PKM-205ENST00000561609 IFT140Q96RY7 1462 aa18.06■□□□□ 0.48
PKM-205ENST00000561609 CARMIL1Q5VZK9 1371 aa18.06■□□□□ 0.48
PKM-205ENST00000561609 GAPVD1Q14C86 1478 aa18.05■□□□□ 0.48
PKM-205ENST00000561609 TDRD9Q8NDG6 1382 aaKnown RBP18.05■□□□□ 0.48
PKM-205ENST00000561609 CUL7Q14999 1698 aa18.05■□□□□ 0.48
PKM-205ENST00000561609 PBRM1Q86U86 1689 aa17.97■□□□□ 0.47
PKM-205ENST00000561609 CLIP1P30622 1438 aa17.96■□□□□ 0.46
PKM-205ENST00000561609 AQRO60306 1485 aaKnown RBP eCLIP17.95■□□□□ 0.469e-8■■■■■ 27.4
PKM-205ENST00000561609 ZNF608Q9ULD9 1512 aaPredicted RBP17.94■□□□□ 0.46
PKM-205ENST00000561609 GRIN2BQ13224 1484 aa17.92■□□□□ 0.46
PKM-205ENST00000561609 EIF4G3O43432 1585 aaKnown RBP17.9■□□□□ 0.46
PKM-205ENST00000561609 ADAMTS12P58397 1594 aa17.88■□□□□ 0.45
PKM-205ENST00000561609 FHAD1B1AJZ9 1412 aa17.86■□□□□ 0.45
PKM-205ENST00000561609 CTTNBP2Q8WZ74 1663 aa17.85■□□□□ 0.45
PKM-205ENST00000561609 VPS8Q8N3P4 1428 aa17.82■□□□□ 0.44
PKM-205ENST00000561609 ARAP1Q96P48 1450 aa17.81■□□□□ 0.44
PKM-205ENST00000561609 ARHGAP35Q9NRY4 1499 aa17.81■□□□□ 0.44
PKM-205ENST00000561609 RANGAP1P46060 587 aaPredicted RBP17.8■□□□□ 0.44
PKM-205ENST00000561609 SNAPC4Q5SXM2 1469 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms