RNA–Protein interactions for RNA: ENST00000561375.5

DCAF11-238, Transcript of DDB1 and CUL4 associated factor 11, human

TSL 3

Gene DCAF11, Length 748 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DCAF11-238	ENST00000561375	NISCH	Q9Y2I1	1504 aa		45.26	■■■■■ 4.84
DCAF11-238	ENST00000561375	CCDC180	Q9P1Z9	1646 aa		40.64	■■■■■ 4.1
DCAF11-238	ENST00000561375	ABCC9	O60706	1549 aa		40.59	■■■■■ 4.09
DCAF11-238	ENST00000561375	RB1CC1	Q8TDY2	1594 aa		38.63	■■■■□ 3.77
DCAF11-238	ENST00000561375	NACAD	O15069	1562 aa		38.35	■■■■□ 3.73
DCAF11-238	ENST00000561375	DCAF8L2	P0C7V8	631 aa		38.19	■■■■□ 3.7
DCAF11-238	ENST00000561375	DNAJC5B	Q9UF47	199 aa		37.96	■■■■□ 3.67
DCAF11-238	ENST00000561375	UNC13A	Q9UPW8	1703 aa		37.89	■■■■□ 3.66
DCAF11-238	ENST00000561375	PABPN1	Q86U42	306 aa	Known RBP eCLIP	37.77	■■■■□ 3.64
DCAF11-238	ENST00000561375	MYO15B	Q96JP2	1530 aa		37.77	■■■■□ 3.64
DCAF11-238	ENST00000561375	ZCCHC6	Q5VYS8	1495 aa	Known RBP	37.53	■■■■□ 3.6
DCAF11-238	ENST00000561375	BICRA	Q9NZM4	1560 aa		37.53	■■■■□ 3.6
DCAF11-238	ENST00000561375	DCAF1	Q9Y4B6	1507 aa		37.33	■■■■□ 3.57
DCAF11-238	ENST00000561375	SCRIB	Q14160	1630 aa		37.1	■■■■□ 3.53
DCAF11-238	ENST00000561375	SHROOM4	Q9ULL8	1493 aa		36.92	■■■■□ 3.5
DCAF11-238	ENST00000561375	CC2D2A	Q9P2K1	1620 aa		36.67	■■■■□ 3.46
DCAF11-238	ENST00000561375	EIF4G1	Q04637	1599 aa	Known RBP	36.59	■■■■□ 3.45
DCAF11-238	ENST00000561375	CECR2	Q9BXF3	1484 aa		36.52	■■■■□ 3.44
DCAF11-238	ENST00000561375	NCAPD3	P42695	1498 aa		35.35	■■■■□ 3.25
DCAF11-238	ENST00000561375	SMARCA4	P51532	1647 aa		35.35	■■■■□ 3.25
DCAF11-238	ENST00000561375	ATAD2B	Q9ULI0	1458 aa		35.3	■■■■□ 3.24
DCAF11-238	ENST00000561375	SMARCA2	P51531	1590 aa		35.21	■■■■□ 3.23
DCAF11-238	ENST00000561375	HMGXB3	Q12766	1538 aa		35.16	■■■■□ 3.22
DCAF11-238	ENST00000561375	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	35.13	■■■■□ 3.21
DCAF11-238	ENST00000561375	ERCC6	Q03468	1493 aa		35.03	■■■■□ 3.2
DCAF11-238	ENST00000561375	BAZ1B	Q9UIG0	1483 aa	Known RBP	35	■■■■□ 3.19
DCAF11-238	ENST00000561375	PEG3	Q9GZU2	1588 aa		34.94	■■■■□ 3.18
DCAF11-238	ENST00000561375	MROH2B	Q7Z745	1585 aa		34.91	■■■■□ 3.18
DCAF11-238	ENST00000561375	NES	P48681	1621 aa		34.9	■■■■□ 3.18
DCAF11-238	ENST00000561375	CUX2	O14529	1486 aa		34.89	■■■■□ 3.18
DCAF11-238	ENST00000561375	DNAJC5	Q9H3Z4	198 aa		34.74	■■■■□ 3.15
DCAF11-238	ENST00000561375	LAMC3	Q9Y6N6	1575 aa		34.62	■■■■□ 3.13
DCAF11-238	ENST00000561375	WIZ	O95785	1651 aa		34.55	■■■■□ 3.12
DCAF11-238	ENST00000561375	THOC2	Q8NI27	1593 aa	Known RBP	34.55	■■■■□ 3.12
DCAF11-238	ENST00000561375	KIF21A	Q7Z4S6	1674 aa		34.52	■■■■□ 3.12
DCAF11-238	ENST00000561375	PDS5B	Q9NTI5	1447 aa		34.36	■■■■□ 3.09
DCAF11-238	ENST00000561375	CADPS	Q9ULU8	1353 aa		34.28	■■■■□ 3.08
DCAF11-238	ENST00000561375	RSF1	Q96T23	1441 aa	Predicted RBP	34.16	■■■■□ 3.06
DCAF11-238	ENST00000561375	MRC2	Q9UBG0	1479 aa		34.12	■■■■□ 3.05
DCAF11-238	ENST00000561375	TOP2A	P11388	1531 aa	Known RBP	34.06	■■■■□ 3.04
DCAF11-238	ENST00000561375	WDR62	O43379	1518 aa		34.04	■■■■□ 3.04
DCAF11-238	ENST00000561375	CEP164	Q9UPV0	1460 aa		34.01	■■■■□ 3.03
DCAF11-238	ENST00000561375	FANCD2	Q9BXW9	1451 aa		33.96	■■■■□ 3.03
DCAF11-238	ENST00000561375	CFTR	P13569	1480 aa		33.93	■■■■□ 3.02
DCAF11-238	ENST00000561375	PRDM2	Q13029	1718 aa		33.75	■■■□□ 2.99
DCAF11-238	ENST00000561375	URB2	Q14146	1524 aa	Known RBP	33.7	■■■□□ 2.99
DCAF11-238	ENST00000561375	CCDC88B	A6NC98	1476 aa		33.65	■■■□□ 2.98
DCAF11-238	ENST00000561375	TRIM41	Q8WV44	630 aa		33.36	■■■□□ 2.93
DCAF11-238	ENST00000561375	TOPBP1	Q92547	1522 aa		33.33	■■■□□ 2.93
DCAF11-238	ENST00000561375	ZNF608	Q9ULD9	1512 aa	Predicted RBP	33.28	■■■□□ 2.92
DCAF11-238	ENST00000561375	IFT140	Q96RY7	1462 aa		33.28	■■■□□ 2.92
DCAF11-238	ENST00000561375	OSCAR	Q8IYS5	282 aa		33.25	■■■□□ 2.91
DCAF11-238	ENST00000561375	DNMBP	Q6XZF7	1577 aa		33.23	■■■□□ 2.91
DCAF11-238	ENST00000561375	ABCC8	Q09428	1581 aa		33.19	■■■□□ 2.9
DCAF11-238	ENST00000561375	EIF4G3	O43432	1585 aa	Known RBP	33.15	■■■□□ 2.9
DCAF11-238	ENST00000561375	TARBP1	Q13395	1621 aa	Known RBP	33.06	■■■□□ 2.88
DCAF11-238	ENST00000561375	POLA1	P09884	1462 aa	Predicted RBP	32.99	■■■□□ 2.87
DCAF11-238	ENST00000561375	RIMBP3C	A6NJZ7	1639 aa		32.96	■■■□□ 2.87
DCAF11-238	ENST00000561375	RIMBP3B	A6NNM3	1639 aa		32.96	■■■□□ 2.87
DCAF11-238	ENST00000561375	RIMBP3	Q9UFD9	1639 aa		32.96	■■■□□ 2.87
DCAF11-238	ENST00000561375	AQR	O60306	1485 aa	Known RBP eCLIP	32.96	■■■□□ 2.87	3e-6	■■■■□ 24.7
DCAF11-238	ENST00000561375	CHD1	O14646	1710 aa		32.94	■■■□□ 2.86
DCAF11-238	ENST00000561375	RAD54L2	Q9Y4B4	1467 aa		32.9	■■■□□ 2.86
DCAF11-238	ENST00000561375	ARHGEF11	O15085	1522 aa		32.82	■■■□□ 2.85
DCAF11-238	ENST00000561375	FGD5	Q6ZNL6	1462 aa		32.82	■■■□□ 2.84
DCAF11-238	ENST00000561375	SOGA1	O94964	1423 aa		32.81	■■■□□ 2.84
DCAF11-238	ENST00000561375	CUX1	P39880	1505 aa		32.81	■■■□□ 2.84
DCAF11-238	ENST00000561375	TDRD9	Q8NDG6	1382 aa	Known RBP	32.76	■■■□□ 2.83
DCAF11-238	ENST00000561375	SUPT5H	O00267	1087 aa	Known RBP	32.73	■■■□□ 2.83
DCAF11-238	ENST00000561375	FBLN2	P98095	1184 aa		32.73	■■■□□ 2.83
DCAF11-238	ENST00000561375	WDR97	A6NE52	1622 aa		32.66	■■■□□ 2.82
DCAF11-238	ENST00000561375	SNAPC4	Q5SXM2	1469 aa		32.66	■■■□□ 2.82
DCAF11-238	ENST00000561375	PBRM1	Q86U86	1689 aa		32.54	■■■□□ 2.8
DCAF11-238	ENST00000561375	CYB5RL	Q6IPT4	315 aa		32.53	■■■□□ 2.8
DCAF11-238	ENST00000561375	GRIN2B	Q13224	1484 aa		32.53	■■■□□ 2.8
DCAF11-238	ENST00000561375	MAGI1	Q96QZ7	1491 aa	Predicted RBP	32.52	■■■□□ 2.8
DCAF11-238	ENST00000561375	ARAP1	Q96P48	1450 aa		32.51	■■■□□ 2.79
DCAF11-238	ENST00000561375	CLASP1	Q7Z460	1538 aa		32.46	■■■□□ 2.79
DCAF11-238	ENST00000561375	CHMP7	Q8WUX9	453 aa	Predicted RBP	32.45	■■■□□ 2.79
DCAF11-238	ENST00000561375	SYNJ1	O43426	1573 aa		32.45	■■■□□ 2.78
DCAF11-238	ENST00000561375	GAPVD1	Q14C86	1478 aa		32.43	■■■□□ 2.78
DCAF11-238	ENST00000561375	ABCA5	Q8WWZ7	1642 aa		32.42	■■■□□ 2.78
DCAF11-238	ENST00000561375	SYNJ2	O15056	1496 aa		32.42	■■■□□ 2.78
DCAF11-238	ENST00000561375	ABCA10	Q8WWZ4	1543 aa		32.41	■■■□□ 2.78
DCAF11-238	ENST00000561375	BIVM-ERCC5	R4GMW8	1640 aa		32.32	■■■□□ 2.76
DCAF11-238	ENST00000561375	TOP2B	Q02880	1626 aa		32.29	■■■□□ 2.76
DCAF11-238	ENST00000561375	WRN	Q14191	1432 aa	Predicted RBP eCLIP	32.27	■■■□□ 2.76
DCAF11-238	ENST00000561375	ADAMTS12	P58397	1594 aa		32.18	■■■□□ 2.74
DCAF11-238	ENST00000561375	TRH	P20396	242 aa	Predicted RBP	32.17	■■■□□ 2.74
DCAF11-238	ENST00000561375	GRIN2A	Q12879	1464 aa		32.14	■■■□□ 2.74
DCAF11-238	ENST00000561375	CEP170	Q5SW79	1584 aa		32.07	■■■□□ 2.72
DCAF11-238	ENST00000561375	ERCC6L2	Q5T890	1561 aa		32.02	■■■□□ 2.72
DCAF11-238	ENST00000561375	ERICH3	Q5RHP9	1530 aa		32	■■■□□ 2.71
DCAF11-238	ENST00000561375	FHAD1	B1AJZ9	1412 aa		32	■■■□□ 2.71
DCAF11-238	ENST00000561375	NUP160	Q12769	1436 aa		32	■■■□□ 2.71
DCAF11-238	ENST00000561375	SHROOM2	Q13796	1616 aa		31.9	■■■□□ 2.7
DCAF11-238	ENST00000561375	RUSC2	Q8N2Y8	1516 aa		31.73	■■■□□ 2.67
DCAF11-238	ENST00000561375	PRG4	Q92954	1404 aa	Predicted RBP	31.7	■■■□□ 2.67
DCAF11-238	ENST00000561375	JPH4	Q96JJ6	628 aa		31.62	■■■□□ 2.65
DCAF11-238	ENST00000561375	CUL7	Q14999	1698 aa		31.6	■■■□□ 2.65

Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms