RNA–Protein interactions for RNA: ENST00000561266.5

TPM1-230, Transcript of tropomyosin 1, humanhuman

TSL 3

Gene TPM1, Length 671 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-230ENST00000561266 NISCHQ9Y2I1 1504 aa33.96■■■■□ 3.03
TPM1-230ENST00000561266 CCDC180Q9P1Z9 1646 aa30.14■■■□□ 2.41
TPM1-230ENST00000561266 ABCC9O60706 1549 aa29.57■■■□□ 2.32
TPM1-230ENST00000561266 DCAF8L2P0C7V8 631 aa28.37■■■□□ 2.13
TPM1-230ENST00000561266 RB1CC1Q8TDY2 1594 aa28.35■■■□□ 2.13
TPM1-230ENST00000561266 NACADO15069 1562 aa28.32■■■□□ 2.12
TPM1-230ENST00000561266 ZCCHC6Q5VYS8 1495 aaKnown RBP28.29■■■□□ 2.12
TPM1-230ENST00000561266 MYO15BQ96JP2 1530 aa28.12■■■□□ 2.09
TPM1-230ENST00000561266 DCAF1Q9Y4B6 1507 aa28.03■■■□□ 2.08
TPM1-230ENST00000561266 UNC13AQ9UPW8 1703 aa27.89■■■□□ 2.05
TPM1-230ENST00000561266 PABPN1Q86U42 306 aaKnown RBP eCLIP27.67■■■□□ 2.02
TPM1-230ENST00000561266 BICRAQ9NZM4 1560 aa27.64■■■□□ 2.01
TPM1-230ENST00000561266 SCRIBQ14160 1630 aa27.59■■■□□ 2.01
TPM1-230ENST00000561266 DNAJC5BQ9UF47 199 aa27.26■■□□□ 1.95
TPM1-230ENST00000561266 SHROOM4Q9ULL8 1493 aa27.11■■□□□ 1.93
TPM1-230ENST00000561266 EIF4G1Q04637 1599 aaKnown RBP26.83■■□□□ 1.89
TPM1-230ENST00000561266 CC2D2AQ9P2K1 1620 aa26.75■■□□□ 1.87
TPM1-230ENST00000561266 CECR2Q9BXF3 1484 aa26.55■■□□□ 1.84
TPM1-230ENST00000561266 SMARCA4P51532 1647 aa26.36■■□□□ 1.81
TPM1-230ENST00000561266 BAZ1AQ9NRL2 1556 aaPredicted RBP26.26■■□□□ 1.79
TPM1-230ENST00000561266 MROH2BQ7Z745 1585 aa26.24■■□□□ 1.79
TPM1-230ENST00000561266 ATAD2BQ9ULI0 1458 aa26.21■■□□□ 1.79
TPM1-230ENST00000561266 NCAPD3P42695 1498 aa26.16■■□□□ 1.78
TPM1-230ENST00000561266 SMARCA2P51531 1590 aa26.1■■□□□ 1.77
TPM1-230ENST00000561266 PEG3Q9GZU2 1588 aa26.07■■□□□ 1.76
TPM1-230ENST00000561266 HMGXB3Q12766 1538 aa26.01■■□□□ 1.75
TPM1-230ENST00000561266 WIZO95785 1651 aa25.98■■□□□ 1.75
TPM1-230ENST00000561266 BAZ1BQ9UIG0 1483 aaKnown RBP25.94■■□□□ 1.74
TPM1-230ENST00000561266 RSF1Q96T23 1441 aaPredicted RBP25.9■■□□□ 1.74
TPM1-230ENST00000561266 NESP48681 1621 aa25.65■■□□□ 1.7
TPM1-230ENST00000561266 TOP2AP11388 1531 aaKnown RBP25.6■■□□□ 1.69
TPM1-230ENST00000561266 LAMC3Q9Y6N6 1575 aa25.44■■□□□ 1.66
TPM1-230ENST00000561266 CADPSQ9ULU8 1353 aa25.4■■□□□ 1.66
TPM1-230ENST00000561266 ERCC6Q03468 1493 aa25.38■■□□□ 1.65
TPM1-230ENST00000561266 CCDC88BA6NC98 1476 aa25.35■■□□□ 1.65
TPM1-230ENST00000561266 KIF21AQ7Z4S6 1674 aa25.32■■□□□ 1.64
TPM1-230ENST00000561266 SUPT5HO00267 1087 aaKnown RBP25.26■■□□□ 1.63
TPM1-230ENST00000561266 CFTRP13569 1480 aa25.26■■□□□ 1.63
TPM1-230ENST00000561266 PDS5BQ9NTI5 1447 aa25.23■■□□□ 1.63
TPM1-230ENST00000561266 THOC2Q8NI27 1593 aaKnown RBP25.21■■□□□ 1.63
TPM1-230ENST00000561266 FANCD2Q9BXW9 1451 aa25.12■■□□□ 1.61
TPM1-230ENST00000561266 CUX2O14529 1486 aa25.1■■□□□ 1.61
TPM1-230ENST00000561266 PRDM2Q13029 1718 aa25.09■■□□□ 1.61
TPM1-230ENST00000561266 CEP164Q9UPV0 1460 aa25.05■■□□□ 1.6
TPM1-230ENST00000561266 MRC2Q9UBG0 1479 aa25.02■■□□□ 1.6
TPM1-230ENST00000561266 WDR62O43379 1518 aa24.96■■□□□ 1.59
TPM1-230ENST00000561266 URB2Q14146 1524 aaKnown RBP24.93■■□□□ 1.58
TPM1-230ENST00000561266 TOPBP1Q92547 1522 aa24.74■■□□□ 1.55
TPM1-230ENST00000561266 DNMBPQ6XZF7 1577 aa24.68■■□□□ 1.54
TPM1-230ENST00000561266 ABCC8Q09428 1581 aa24.61■■□□□ 1.53
TPM1-230ENST00000561266 CUX1P39880 1505 aa24.61■■□□□ 1.53
TPM1-230ENST00000561266 POLA1P09884 1462 aaPredicted RBP24.53■■□□□ 1.52
TPM1-230ENST00000561266 ZNF608Q9ULD9 1512 aaPredicted RBP24.53■■□□□ 1.52
TPM1-230ENST00000561266 IFT140Q96RY7 1462 aa24.51■■□□□ 1.51
TPM1-230ENST00000561266 TARBP1Q13395 1621 aaKnown RBP24.5■■□□□ 1.51
TPM1-230ENST00000561266 RAD54L2Q9Y4B4 1467 aa24.48■■□□□ 1.51
TPM1-230ENST00000561266 FGD5Q6ZNL6 1462 aa24.47■■□□□ 1.51
TPM1-230ENST00000561266 SOGA1O94964 1423 aa24.41■■□□□ 1.5
TPM1-230ENST00000561266 DNAJC5Q9H3Z4 198 aa24.4■■□□□ 1.5
TPM1-230ENST00000561266 SYNJ1O43426 1573 aa24.4■■□□□ 1.5
TPM1-230ENST00000561266 EIF4G3O43432 1585 aaKnown RBP24.38■■□□□ 1.49
TPM1-230ENST00000561266 AQRO60306 1485 aaKnown RBP eCLIP24.37■■□□□ 1.491e-12■■■■□ 23
TPM1-230ENST00000561266 WRNQ14191 1432 aaPredicted RBP eCLIP24.36■■□□□ 1.49
TPM1-230ENST00000561266 BIVM-ERCC5R4GMW8 1640 aa24.35■■□□□ 1.49
TPM1-230ENST00000561266 TOP2BQ02880 1626 aa24.34■■□□□ 1.49
TPM1-230ENST00000561266 TDRD9Q8NDG6 1382 aaKnown RBP24.31■■□□□ 1.48
TPM1-230ENST00000561266 WDR97A6NE52 1622 aa24.31■■□□□ 1.48
TPM1-230ENST00000561266 ABCA10Q8WWZ4 1543 aa24.21■■□□□ 1.47
TPM1-230ENST00000561266 ABCA5Q8WWZ7 1642 aa24.15■■□□□ 1.46
TPM1-230ENST00000561266 CHD1O14646 1710 aa24.12■■□□□ 1.45
TPM1-230ENST00000561266 GAPVD1Q14C86 1478 aa24.12■■□□□ 1.45
TPM1-230ENST00000561266 PBRM1Q86U86 1689 aa24.11■■□□□ 1.45
TPM1-230ENST00000561266 SNAPC4Q5SXM2 1469 aa24.11■■□□□ 1.45
TPM1-230ENST00000561266 GRIN2BQ13224 1484 aa24.08■■□□□ 1.45
TPM1-230ENST00000561266 OSCARQ8IYS5 282 aa24.08■■□□□ 1.45
TPM1-230ENST00000561266 FBLN2P98095 1184 aa24.01■■□□□ 1.43
TPM1-230ENST00000561266 MAGI1Q96QZ7 1491 aaPredicted RBP24■■□□□ 1.43
TPM1-230ENST00000561266 SYNJ2O15056 1496 aa23.94■■□□□ 1.42
TPM1-230ENST00000561266 CHMP7Q8WUX9 453 aaPredicted RBP23.91■■□□□ 1.42
TPM1-230ENST00000561266 ADAMTS12P58397 1594 aa23.91■■□□□ 1.42
TPM1-230ENST00000561266 ERICH3Q5RHP9 1530 aa23.89■■□□□ 1.42
TPM1-230ENST00000561266 CLASP1Q7Z460 1538 aa23.82■■□□□ 1.4
TPM1-230ENST00000561266 FHAD1B1AJZ9 1412 aa23.82■■□□□ 1.4
TPM1-230ENST00000561266 IGF1RP08069 1367 aa23.81■■□□□ 1.4
TPM1-230ENST00000561266 KIF27Q86VH2 1401 aa23.81■■□□□ 1.4
TPM1-230ENST00000561266 GRIN2AQ12879 1464 aa23.81■■□□□ 1.4
TPM1-230ENST00000561266 RUSC2Q8N2Y8 1516 aa23.8■■□□□ 1.4
TPM1-230ENST00000561266 RIMBP3CA6NJZ7 1639 aa23.79■■□□□ 1.4
TPM1-230ENST00000561266 RIMBP3BA6NNM3 1639 aa23.79■■□□□ 1.4
TPM1-230ENST00000561266 RIMBP3Q9UFD9 1639 aa23.79■■□□□ 1.4
TPM1-230ENST00000561266 TRIM41Q8WV44 630 aa23.78■■□□□ 1.4
TPM1-230ENST00000561266 ARHGEF11O15085 1522 aa23.75■■□□□ 1.39
TPM1-230ENST00000561266 CEP170Q5SW79 1584 aa23.75■■□□□ 1.39
TPM1-230ENST00000561266 NUP160Q12769 1436 aa23.71■■□□□ 1.39
TPM1-230ENST00000561266 CUL7Q14999 1698 aa23.67■■□□□ 1.38
TPM1-230ENST00000561266 CARMIL1Q5VZK9 1371 aa23.63■■□□□ 1.37
TPM1-230ENST00000561266 CHIC1Q5VXU3 224 aa23.6■■□□□ 1.37
TPM1-230ENST00000561266 ARAP1Q96P48 1450 aa23.6■■□□□ 1.37
TPM1-230ENST00000561266 ERCC6L2Q5T890 1561 aa23.59■■□□□ 1.37
TPM1-230ENST00000561266 SHROOM2Q13796 1616 aa23.55■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms