RNA–Protein interactions for RNA: ENST00000560620.1

CTDSPL2-209, Transcript of CTD small phosphatase like 2, humanhuman

TSL 3

Gene CTDSPL2, Length 863 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSPL2-209ENST00000560620 NISCHQ9Y2I1 1504 aa31.49■■■□□ 2.63
CTDSPL2-209ENST00000560620 CCDC180Q9P1Z9 1646 aa28.04■■■□□ 2.08
CTDSPL2-209ENST00000560620 ABCC9O60706 1549 aa27.67■■■□□ 2.02
CTDSPL2-209ENST00000560620 DCAF8L2P0C7V8 631 aa26.58■■□□□ 1.85
CTDSPL2-209ENST00000560620 RB1CC1Q8TDY2 1594 aa26.51■■□□□ 1.83
CTDSPL2-209ENST00000560620 NACADO15069 1562 aa26.41■■□□□ 1.82
CTDSPL2-209ENST00000560620 ZCCHC6Q5VYS8 1495 aaKnown RBP26.19■■□□□ 1.78
CTDSPL2-209ENST00000560620 MYO15BQ96JP2 1530 aa26.14■■□□□ 1.78
CTDSPL2-209ENST00000560620 DCAF1Q9Y4B6 1507 aa25.99■■□□□ 1.75
CTDSPL2-209ENST00000560620 UNC13AQ9UPW8 1703 aa25.89■■□□□ 1.74
CTDSPL2-209ENST00000560620 PABPN1Q86U42 306 aaKnown RBP eCLIP25.86■■□□□ 1.73
CTDSPL2-209ENST00000560620 SCRIBQ14160 1630 aa25.66■■□□□ 1.7
CTDSPL2-209ENST00000560620 BICRAQ9NZM4 1560 aa25.65■■□□□ 1.7
CTDSPL2-209ENST00000560620 DNAJC5BQ9UF47 199 aa25.45■■□□□ 1.66
CTDSPL2-209ENST00000560620 SHROOM4Q9ULL8 1493 aa25.34■■□□□ 1.65
CTDSPL2-209ENST00000560620 EIF4G1Q04637 1599 aaKnown RBP25.03■■□□□ 1.6
CTDSPL2-209ENST00000560620 CC2D2AQ9P2K1 1620 aa24.97■■□□□ 1.59
CTDSPL2-209ENST00000560620 CECR2Q9BXF3 1484 aa24.84■■□□□ 1.57
CTDSPL2-209ENST00000560620 SMARCA4P51532 1647 aa24.48■■□□□ 1.51
CTDSPL2-209ENST00000560620 BAZ1AQ9NRL2 1556 aaPredicted RBP24.45■■□□□ 1.5
CTDSPL2-209ENST00000560620 ATAD2BQ9ULI0 1458 aa24.37■■□□□ 1.49
CTDSPL2-209ENST00000560620 SMARCA2P51531 1590 aa24.35■■□□□ 1.49
CTDSPL2-209ENST00000560620 NCAPD3P42695 1498 aa24.35■■□□□ 1.49
CTDSPL2-209ENST00000560620 MROH2BQ7Z745 1585 aa24.29■■□□□ 1.48
CTDSPL2-209ENST00000560620 HMGXB3Q12766 1538 aa24.23■■□□□ 1.47
CTDSPL2-209ENST00000560620 BAZ1BQ9UIG0 1483 aaKnown RBP24.22■■□□□ 1.47
CTDSPL2-209ENST00000560620 PEG3Q9GZU2 1588 aa24.18■■□□□ 1.46
CTDSPL2-209ENST00000560620 WIZO95785 1651 aa24.05■■□□□ 1.44
CTDSPL2-209ENST00000560620 RSF1Q96T23 1441 aaPredicted RBP23.96■■□□□ 1.43
CTDSPL2-209ENST00000560620 ERCC6Q03468 1493 aa23.89■■□□□ 1.42
CTDSPL2-209ENST00000560620 NESP48681 1621 aa23.88■■□□□ 1.41
CTDSPL2-209ENST00000560620 LAMC3Q9Y6N6 1575 aa23.77■■□□□ 1.4
CTDSPL2-209ENST00000560620 TOP2AP11388 1531 aaKnown RBP23.75■■□□□ 1.39
CTDSPL2-209ENST00000560620 CADPSQ9ULU8 1353 aa23.67■■□□□ 1.38
CTDSPL2-209ENST00000560620 PDS5BQ9NTI5 1447 aa23.64■■□□□ 1.37
CTDSPL2-209ENST00000560620 CUX2O14529 1486 aa23.59■■□□□ 1.37
CTDSPL2-209ENST00000560620 KIF21AQ7Z4S6 1674 aa23.59■■□□□ 1.37
CTDSPL2-209ENST00000560620 THOC2Q8NI27 1593 aaKnown RBP23.49■■□□□ 1.35
CTDSPL2-209ENST00000560620 CCDC88BA6NC98 1476 aa23.49■■□□□ 1.35
CTDSPL2-209ENST00000560620 CFTRP13569 1480 aa23.48■■□□□ 1.35
CTDSPL2-209ENST00000560620 FANCD2Q9BXW9 1451 aa23.43■■□□□ 1.34
CTDSPL2-209ENST00000560620 CEP164Q9UPV0 1460 aa23.43■■□□□ 1.34
CTDSPL2-209ENST00000560620 SUPT5HO00267 1087 aaKnown RBP23.41■■□□□ 1.34
CTDSPL2-209ENST00000560620 MRC2Q9UBG0 1479 aa23.39■■□□□ 1.34
CTDSPL2-209ENST00000560620 PRDM2Q13029 1718 aa23.32■■□□□ 1.32
CTDSPL2-209ENST00000560620 WDR62O43379 1518 aa23.28■■□□□ 1.32
CTDSPL2-209ENST00000560620 URB2Q14146 1524 aaKnown RBP23.18■■□□□ 1.3
CTDSPL2-209ENST00000560620 DNAJC5Q9H3Z4 198 aa23.04■■□□□ 1.28
CTDSPL2-209ENST00000560620 TOPBP1Q92547 1522 aa23.03■■□□□ 1.28
CTDSPL2-209ENST00000560620 ABCC8Q09428 1581 aa23.01■■□□□ 1.27
CTDSPL2-209ENST00000560620 DNMBPQ6XZF7 1577 aa22.98■■□□□ 1.27
CTDSPL2-209ENST00000560620 IFT140Q96RY7 1462 aa22.91■■□□□ 1.26
CTDSPL2-209ENST00000560620 ZNF608Q9ULD9 1512 aaPredicted RBP22.82■■□□□ 1.24
CTDSPL2-209ENST00000560620 POLA1P09884 1462 aaPredicted RBP22.81■■□□□ 1.24
CTDSPL2-209ENST00000560620 CUX1P39880 1505 aa22.79■■□□□ 1.24
CTDSPL2-209ENST00000560620 FGD5Q6ZNL6 1462 aa22.76■■□□□ 1.23
CTDSPL2-209ENST00000560620 TARBP1Q13395 1621 aaKnown RBP22.75■■□□□ 1.23
CTDSPL2-209ENST00000560620 SOGA1O94964 1423 aa22.75■■□□□ 1.23
CTDSPL2-209ENST00000560620 RAD54L2Q9Y4B4 1467 aa22.75■■□□□ 1.23
CTDSPL2-209ENST00000560620 EIF4G3O43432 1585 aaKnown RBP22.74■■□□□ 1.23
CTDSPL2-209ENST00000560620 AQRO60306 1485 aaKnown RBP eCLIP22.7■■□□□ 1.22
CTDSPL2-209ENST00000560620 TDRD9Q8NDG6 1382 aaKnown RBP22.66■■□□□ 1.22
CTDSPL2-209ENST00000560620 OSCARQ8IYS5 282 aa22.66■■□□□ 1.22
CTDSPL2-209ENST00000560620 WRNQ14191 1432 aaPredicted RBP eCLIP22.64■■□□□ 1.21
CTDSPL2-209ENST00000560620 FBLN2P98095 1184 aa22.58■■□□□ 1.21
CTDSPL2-209ENST00000560620 TOP2BQ02880 1626 aa22.57■■□□□ 1.2
CTDSPL2-209ENST00000560620 SYNJ1O43426 1573 aa22.56■■□□□ 1.2
CTDSPL2-209ENST00000560620 WDR97A6NE52 1622 aa22.55■■□□□ 1.2
CTDSPL2-209ENST00000560620 BIVM-ERCC5R4GMW8 1640 aa22.55■■□□□ 1.2
CTDSPL2-209ENST00000560620 SNAPC4Q5SXM2 1469 aa22.49■■□□□ 1.19
CTDSPL2-209ENST00000560620 CHD1O14646 1710 aa22.49■■□□□ 1.19
CTDSPL2-209ENST00000560620 ABCA10Q8WWZ4 1543 aa22.49■■□□□ 1.19
CTDSPL2-209ENST00000560620 GRIN2BQ13224 1484 aa22.48■■□□□ 1.19
CTDSPL2-209ENST00000560620 GAPVD1Q14C86 1478 aa22.48■■□□□ 1.19
CTDSPL2-209ENST00000560620 PBRM1Q86U86 1689 aa22.44■■□□□ 1.18
CTDSPL2-209ENST00000560620 CHMP7Q8WUX9 453 aaPredicted RBP22.44■■□□□ 1.18
CTDSPL2-209ENST00000560620 MAGI1Q96QZ7 1491 aaPredicted RBP22.42■■□□□ 1.18
CTDSPL2-209ENST00000560620 ABCA5Q8WWZ7 1642 aa22.42■■□□□ 1.18
CTDSPL2-209ENST00000560620 TRIM41Q8WV44 630 aa22.36■■□□□ 1.17
CTDSPL2-209ENST00000560620 SYNJ2O15056 1496 aa22.35■■□□□ 1.17
CTDSPL2-209ENST00000560620 RIMBP3CA6NJZ7 1639 aa22.27■■□□□ 1.16
CTDSPL2-209ENST00000560620 RIMBP3BA6NNM3 1639 aa22.27■■□□□ 1.16
CTDSPL2-209ENST00000560620 RIMBP3Q9UFD9 1639 aa22.27■■□□□ 1.16
CTDSPL2-209ENST00000560620 ARHGEF11O15085 1522 aa22.25■■□□□ 1.15
CTDSPL2-209ENST00000560620 ERICH3Q5RHP9 1530 aa22.24■■□□□ 1.15
CTDSPL2-209ENST00000560620 ADAMTS12P58397 1594 aa22.23■■□□□ 1.15
CTDSPL2-209ENST00000560620 FHAD1B1AJZ9 1412 aa22.21■■□□□ 1.15
CTDSPL2-209ENST00000560620 GRIN2AQ12879 1464 aa22.19■■□□□ 1.14
CTDSPL2-209ENST00000560620 CLASP1Q7Z460 1538 aa22.18■■□□□ 1.14
CTDSPL2-209ENST00000560620 KIF27Q86VH2 1401 aa22.18■■□□□ 1.14
CTDSPL2-209ENST00000560620 CYB5RLQ6IPT4 315 aa22.13■■□□□ 1.13
CTDSPL2-209ENST00000560620 CEP170Q5SW79 1584 aa22.08■■□□□ 1.12
CTDSPL2-209ENST00000560620 IGF1RP08069 1367 aa22.07■■□□□ 1.12
CTDSPL2-209ENST00000560620 NUP160Q12769 1436 aa22.06■■□□□ 1.12
CTDSPL2-209ENST00000560620 ARAP1Q96P48 1450 aa22.04■■□□□ 1.12
CTDSPL2-209ENST00000560620 CUL7Q14999 1698 aa22.03■■□□□ 1.12
CTDSPL2-209ENST00000560620 CARMIL1Q5VZK9 1371 aa21.97■■□□□ 1.11
CTDSPL2-209ENST00000560620 RUSC2Q8N2Y8 1516 aa21.92■■□□□ 1.1
CTDSPL2-209ENST00000560620 JPH4Q96JJ6 628 aa21.9■■□□□ 1.1
CTDSPL2-209ENST00000560620 SHROOM2Q13796 1616 aa21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms