RNA–Protein interactions for RNA: ENST00000560316.1

HERC1-207, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 4

Gene HERC1, Length 577 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-207ENST00000560316 NISCHQ9Y2I1 1504 aa42.4■■■■■ 4.38
HERC1-207ENST00000560316 ABCC9O60706 1549 aa38.86■■■■□ 3.81
HERC1-207ENST00000560316 CCDC180Q9P1Z9 1646 aa38.21■■■■□ 3.71
HERC1-207ENST00000560316 DNAJC5BQ9UF47 199 aa36.98■■■■□ 3.51
HERC1-207ENST00000560316 RB1CC1Q8TDY2 1594 aa36.66■■■■□ 3.46
HERC1-207ENST00000560316 NACADO15069 1562 aa36.27■■■■□ 3.4
HERC1-207ENST00000560316 PABPN1Q86U42 306 aaKnown RBP eCLIP36.14■■■■□ 3.38
HERC1-207ENST00000560316 DCAF8L2P0C7V8 631 aa36.13■■■■□ 3.37
HERC1-207ENST00000560316 UNC13AQ9UPW8 1703 aa35.84■■■■□ 3.33
HERC1-207ENST00000560316 BICRAQ9NZM4 1560 aa35.66■■■■□ 3.3
HERC1-207ENST00000560316 MYO15BQ96JP2 1530 aa35.57■■■■□ 3.28
HERC1-207ENST00000560316 CECR2Q9BXF3 1484 aa35.03■■■■□ 3.2
HERC1-207ENST00000560316 CC2D2AQ9P2K1 1620 aa35.03■■■■□ 3.2
HERC1-207ENST00000560316 SHROOM4Q9ULL8 1493 aa35.03■■■■□ 3.2
HERC1-207ENST00000560316 ZCCHC6Q5VYS8 1495 aaKnown RBP35.02■■■■□ 3.2
HERC1-207ENST00000560316 DCAF1Q9Y4B6 1507 aa34.93■■■■□ 3.18
HERC1-207ENST00000560316 SCRIBQ14160 1630 aa34.88■■■■□ 3.17
HERC1-207ENST00000560316 EIF4G1Q04637 1599 aaKnown RBP34.82■■■■□ 3.16
HERC1-207ENST00000560316 DNAJC5Q9H3Z4 198 aa34.29■■■■□ 3.08
HERC1-207ENST00000560316 CUX2O14529 1486 aa33.64■■■□□ 2.98
HERC1-207ENST00000560316 ERCC6Q03468 1493 aa33.56■■■□□ 2.96
HERC1-207ENST00000560316 NCAPD3P42695 1498 aa33.52■■■□□ 2.96
HERC1-207ENST00000560316 ATAD2BQ9ULI0 1458 aa33.37■■■□□ 2.93
HERC1-207ENST00000560316 NESP48681 1621 aa33.24■■■□□ 2.91
HERC1-207ENST00000560316 SMARCA2P51531 1590 aa33.21■■■□□ 2.91
HERC1-207ENST00000560316 HMGXB3Q12766 1538 aa33.2■■■□□ 2.91
HERC1-207ENST00000560316 SMARCA4P51532 1647 aa33.18■■■□□ 2.9
HERC1-207ENST00000560316 BAZ1BQ9UIG0 1483 aaKnown RBP33.01■■■□□ 2.88
HERC1-207ENST00000560316 THOC2Q8NI27 1593 aaKnown RBP32.95■■■□□ 2.86
HERC1-207ENST00000560316 BAZ1AQ9NRL2 1556 aaPredicted RBP32.92■■■□□ 2.86
HERC1-207ENST00000560316 PEG3Q9GZU2 1588 aa32.83■■■□□ 2.85
HERC1-207ENST00000560316 LAMC3Q9Y6N6 1575 aa32.83■■■□□ 2.85
HERC1-207ENST00000560316 KIF21AQ7Z4S6 1674 aa32.74■■■□□ 2.83
HERC1-207ENST00000560316 MROH2BQ7Z745 1585 aa32.7■■■□□ 2.82
HERC1-207ENST00000560316 PDS5BQ9NTI5 1447 aa32.68■■■□□ 2.82
HERC1-207ENST00000560316 TRIM41Q8WV44 630 aa32.63■■■□□ 2.81
HERC1-207ENST00000560316 CADPSQ9ULU8 1353 aa32.5■■■□□ 2.79
HERC1-207ENST00000560316 MRC2Q9UBG0 1479 aa32.45■■■□□ 2.79
HERC1-207ENST00000560316 WDR62O43379 1518 aa32.37■■■□□ 2.77
HERC1-207ENST00000560316 WIZO95785 1651 aa32.27■■■□□ 2.76
HERC1-207ENST00000560316 CEP164Q9UPV0 1460 aa32.21■■■□□ 2.75
HERC1-207ENST00000560316 FANCD2Q9BXW9 1451 aa32.14■■■□□ 2.74
HERC1-207ENST00000560316 OSCARQ8IYS5 282 aa32.07■■■□□ 2.72
HERC1-207ENST00000560316 CFTRP13569 1480 aa32.01■■■□□ 2.71
HERC1-207ENST00000560316 URB2Q14146 1524 aaKnown RBP31.92■■■□□ 2.7
HERC1-207ENST00000560316 RSF1Q96T23 1441 aaPredicted RBP31.82■■■□□ 2.68
HERC1-207ENST00000560316 TOP2AP11388 1531 aaKnown RBP31.79■■■□□ 2.68
HERC1-207ENST00000560316 RIMBP3CA6NJZ7 1639 aa31.69■■■□□ 2.66
HERC1-207ENST00000560316 RIMBP3BA6NNM3 1639 aa31.69■■■□□ 2.66
HERC1-207ENST00000560316 RIMBP3Q9UFD9 1639 aa31.69■■■□□ 2.66
HERC1-207ENST00000560316 ZNF608Q9ULD9 1512 aaPredicted RBP31.64■■■□□ 2.66
HERC1-207ENST00000560316 IFT140Q96RY7 1462 aa31.58■■■□□ 2.65
HERC1-207ENST00000560316 PRDM2Q13029 1718 aa31.57■■■□□ 2.64
HERC1-207ENST00000560316 ARHGEF11O15085 1522 aa31.54■■■□□ 2.64
HERC1-207ENST00000560316 CCDC88BA6NC98 1476 aa31.48■■■□□ 2.63
HERC1-207ENST00000560316 TOPBP1Q92547 1522 aa31.47■■■□□ 2.63
HERC1-207ENST00000560316 CYB5RLQ6IPT4 315 aa31.39■■■□□ 2.62
HERC1-207ENST00000560316 EIF4G3O43432 1585 aaKnown RBP31.39■■■□□ 2.61
HERC1-207ENST00000560316 ABCC8Q09428 1581 aa31.3■■■□□ 2.6
HERC1-207ENST00000560316 AQRO60306 1485 aaKnown RBP eCLIP31.29■■■□□ 2.64e-7■■□□□ 12.8
HERC1-207ENST00000560316 DNMBPQ6XZF7 1577 aa31.28■■■□□ 2.6
HERC1-207ENST00000560316 CHD1O14646 1710 aa31.25■■■□□ 2.59
HERC1-207ENST00000560316 TRHP20396 242 aaPredicted RBP31.22■■■□□ 2.59
HERC1-207ENST00000560316 ARAP1Q96P48 1450 aa31.21■■■□□ 2.59
HERC1-207ENST00000560316 TARBP1Q13395 1621 aaKnown RBP31.21■■■□□ 2.59
HERC1-207ENST00000560316 FBLN2P98095 1184 aa31.21■■■□□ 2.59
HERC1-207ENST00000560316 POLA1P09884 1462 aaPredicted RBP31.11■■■□□ 2.57
HERC1-207ENST00000560316 RAD54L2Q9Y4B4 1467 aa31.06■■■□□ 2.56
HERC1-207ENST00000560316 TDRD9Q8NDG6 1382 aaKnown RBP31.02■■■□□ 2.56
HERC1-207ENST00000560316 SOGA1O94964 1423 aa30.98■■■□□ 2.55
HERC1-207ENST00000560316 SNAPC4Q5SXM2 1469 aa30.93■■■□□ 2.54
HERC1-207ENST00000560316 CLASP1Q7Z460 1538 aa30.88■■■□□ 2.53
HERC1-207ENST00000560316 CHMP7Q8WUX9 453 aaPredicted RBP30.86■■■□□ 2.53
HERC1-207ENST00000560316 FGD5Q6ZNL6 1462 aa30.85■■■□□ 2.53
HERC1-207ENST00000560316 SYNJ1O43426 1573 aa30.8■■■□□ 2.52
HERC1-207ENST00000560316 WDR97A6NE52 1622 aa30.79■■■□□ 2.52
HERC1-207ENST00000560316 MAGI1Q96QZ7 1491 aaPredicted RBP30.78■■■□□ 2.52
HERC1-207ENST00000560316 CUX1P39880 1505 aa30.75■■■□□ 2.51
HERC1-207ENST00000560316 GRIN2BQ13224 1484 aa30.74■■■□□ 2.51
HERC1-207ENST00000560316 SYNJ2O15056 1496 aa30.7■■■□□ 2.51
HERC1-207ENST00000560316 AEBP2Q6ZN18 517 aaPredicted RBP30.69■■■□□ 2.5
HERC1-207ENST00000560316 GAPVD1Q14C86 1478 aa30.61■■■□□ 2.49
HERC1-207ENST00000560316 PBRM1Q86U86 1689 aa30.57■■■□□ 2.48
HERC1-207ENST00000560316 ABCA10Q8WWZ4 1543 aa30.44■■■□□ 2.46
HERC1-207ENST00000560316 ABCA5Q8WWZ7 1642 aa30.44■■■□□ 2.46
HERC1-207ENST00000560316 ERCC6L2Q5T890 1561 aa30.42■■■□□ 2.46
HERC1-207ENST00000560316 GRIN2AQ12879 1464 aa30.36■■■□□ 2.45
HERC1-207ENST00000560316 CEP170Q5SW79 1584 aa30.29■■■□□ 2.44
HERC1-207ENST00000560316 NUP160Q12769 1436 aa30.27■■■□□ 2.44
HERC1-207ENST00000560316 ADAMTS12P58397 1594 aa30.26■■■□□ 2.43
HERC1-207ENST00000560316 WRNQ14191 1432 aaPredicted RBP eCLIP30.22■■■□□ 2.43
HERC1-207ENST00000560316 SHROOM2Q13796 1616 aa30.17■■■□□ 2.42
HERC1-207ENST00000560316 FHAD1B1AJZ9 1412 aa30.16■■■□□ 2.42
HERC1-207ENST00000560316 SUPT5HO00267 1087 aaKnown RBP30.08■■■□□ 2.41
HERC1-207ENST00000560316 KIF13AQ9H1H9 1805 aa30.07■■■□□ 2.4
HERC1-207ENST00000560316 TOP2BQ02880 1626 aa30.07■■■□□ 2.4
HERC1-207ENST00000560316 BIVM-ERCC5R4GMW8 1640 aa30.06■■■□□ 2.4
HERC1-207ENST00000560316 PRG4Q92954 1404 aaPredicted RBP30.05■■■□□ 2.4
HERC1-207ENST00000560316 ERICH3Q5RHP9 1530 aa30.03■■■□□ 2.4
HERC1-207ENST00000560316 JPH4Q96JJ6 628 aa29.99■■■□□ 2.39
Retrieved 100 of 20,778 RNA–protein pairs in 135.9 ms