RNA–Protein interactions for RNA: ENST00000560005.6

PSEN1-225, Transcript of presenilin 1, humanhuman

TSL 3

Gene PSEN1, Length 699 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-225ENST00000560005 NISCHQ9Y2I1 1504 aa51.59■■■■■ 5.85
PSEN1-225ENST00000560005 ABCC9O60706 1549 aa47.2■■■■■ 5.15
PSEN1-225ENST00000560005 CCDC180Q9P1Z9 1646 aa46.53■■■■■ 5.04
PSEN1-225ENST00000560005 DNAJC5BQ9UF47 199 aa44.83■■■■■ 4.77
PSEN1-225ENST00000560005 RB1CC1Q8TDY2 1594 aa44.61■■■■■ 4.73
PSEN1-225ENST00000560005 NACADO15069 1562 aa44.14■■■■■ 4.66
PSEN1-225ENST00000560005 DCAF8L2P0C7V8 631 aa43.86■■■■■ 4.61
PSEN1-225ENST00000560005 PABPN1Q86U42 306 aaKnown RBP eCLIP43.86■■■■■ 4.61
PSEN1-225ENST00000560005 UNC13AQ9UPW8 1703 aa43.6■■■■■ 4.57
PSEN1-225ENST00000560005 BICRAQ9NZM4 1560 aa43.35■■■■■ 4.53
PSEN1-225ENST00000560005 MYO15BQ96JP2 1530 aa43.3■■■■■ 4.52
PSEN1-225ENST00000560005 SHROOM4Q9ULL8 1493 aa42.66■■■■■ 4.42
PSEN1-225ENST00000560005 ZCCHC6Q5VYS8 1495 aaKnown RBP42.62■■■■■ 4.41
PSEN1-225ENST00000560005 CC2D2AQ9P2K1 1620 aa42.59■■■■■ 4.41
PSEN1-225ENST00000560005 CECR2Q9BXF3 1484 aa42.57■■■■■ 4.41
PSEN1-225ENST00000560005 DCAF1Q9Y4B6 1507 aa42.54■■■■■ 4.4
PSEN1-225ENST00000560005 SCRIBQ14160 1630 aa42.42■■■■■ 4.38
PSEN1-225ENST00000560005 EIF4G1Q04637 1599 aaKnown RBP42.35■■■■■ 4.37
PSEN1-225ENST00000560005 DNAJC5Q9H3Z4 198 aa41.6■■■■■ 4.25
PSEN1-225ENST00000560005 CUX2O14529 1486 aa40.9■■■■■ 4.14
PSEN1-225ENST00000560005 ERCC6Q03468 1493 aa40.79■■■■■ 4.12
PSEN1-225ENST00000560005 NCAPD3P42695 1498 aa40.77■■■■■ 4.12
PSEN1-225ENST00000560005 ATAD2BQ9ULI0 1458 aa40.58■■■■■ 4.09
PSEN1-225ENST00000560005 HMGXB3Q12766 1538 aa40.41■■■■■ 4.06
PSEN1-225ENST00000560005 SMARCA2P51531 1590 aa40.4■■■■■ 4.06
PSEN1-225ENST00000560005 NESP48681 1621 aa40.38■■■■■ 4.05
PSEN1-225ENST00000560005 SMARCA4P51532 1647 aa40.38■■■■■ 4.05
PSEN1-225ENST00000560005 BAZ1BQ9UIG0 1483 aaKnown RBP40.15■■■■■ 4.02
PSEN1-225ENST00000560005 BAZ1AQ9NRL2 1556 aaPredicted RBP40.08■■■■■ 4.01
PSEN1-225ENST00000560005 THOC2Q8NI27 1593 aaKnown RBP40.06■■■■■ 4
PSEN1-225ENST00000560005 PEG3Q9GZU2 1588 aa39.96■■■■□ 3.99
PSEN1-225ENST00000560005 LAMC3Q9Y6N6 1575 aa39.94■■■■□ 3.98
PSEN1-225ENST00000560005 KIF21AQ7Z4S6 1674 aa39.8■■■■□ 3.96
PSEN1-225ENST00000560005 MROH2BQ7Z745 1585 aa39.76■■■■□ 3.95
PSEN1-225ENST00000560005 PDS5BQ9NTI5 1447 aa39.75■■■■□ 3.95
PSEN1-225ENST00000560005 TRIM41Q8WV44 630 aa39.57■■■■□ 3.93
PSEN1-225ENST00000560005 CADPSQ9ULU8 1353 aa39.51■■■■□ 3.92
PSEN1-225ENST00000560005 MRC2Q9UBG0 1479 aa39.45■■■■□ 3.91
PSEN1-225ENST00000560005 WDR62O43379 1518 aa39.37■■■■□ 3.89
PSEN1-225ENST00000560005 WIZO95785 1651 aa39.25■■■■□ 3.87
PSEN1-225ENST00000560005 CEP164Q9UPV0 1460 aa39.17■■■■□ 3.86
PSEN1-225ENST00000560005 FANCD2Q9BXW9 1451 aa39.08■■■■□ 3.85
PSEN1-225ENST00000560005 CFTRP13569 1480 aa38.93■■■■□ 3.82
PSEN1-225ENST00000560005 OSCARQ8IYS5 282 aa38.93■■■■□ 3.82
PSEN1-225ENST00000560005 URB2Q14146 1524 aaKnown RBP38.8■■■■□ 3.8
PSEN1-225ENST00000560005 RSF1Q96T23 1441 aaPredicted RBP38.7■■■■□ 3.79
PSEN1-225ENST00000560005 TOP2AP11388 1531 aaKnown RBP38.69■■■■□ 3.78
PSEN1-225ENST00000560005 RIMBP3CA6NJZ7 1639 aa38.51■■■■□ 3.76
PSEN1-225ENST00000560005 RIMBP3BA6NNM3 1639 aa38.51■■■■□ 3.76
PSEN1-225ENST00000560005 RIMBP3Q9UFD9 1639 aa38.51■■■■□ 3.76
PSEN1-225ENST00000560005 PRDM2Q13029 1718 aa38.46■■■■□ 3.75
PSEN1-225ENST00000560005 ZNF608Q9ULD9 1512 aaPredicted RBP38.44■■■■□ 3.74
PSEN1-225ENST00000560005 IFT140Q96RY7 1462 aa38.41■■■■□ 3.74
PSEN1-225ENST00000560005 ARHGEF11O15085 1522 aa38.33■■■■□ 3.73
PSEN1-225ENST00000560005 CCDC88BA6NC98 1476 aa38.28■■■■□ 3.72
PSEN1-225ENST00000560005 TOPBP1Q92547 1522 aa38.27■■■■□ 3.72
PSEN1-225ENST00000560005 EIF4G3O43432 1585 aaKnown RBP38.19■■■■□ 3.7
PSEN1-225ENST00000560005 ABCC8Q09428 1581 aa38.1■■■■□ 3.69
PSEN1-225ENST00000560005 CYB5RLQ6IPT4 315 aa38.1■■■■□ 3.69
PSEN1-225ENST00000560005 DNMBPQ6XZF7 1577 aa38.06■■■■□ 3.68
PSEN1-225ENST00000560005 AQRO60306 1485 aaKnown RBP eCLIP38.01■■■■□ 3.67
PSEN1-225ENST00000560005 CHD1O14646 1710 aa38.01■■■■□ 3.67
PSEN1-225ENST00000560005 TARBP1Q13395 1621 aaKnown RBP37.97■■■■□ 3.67
PSEN1-225ENST00000560005 ARAP1Q96P48 1450 aa37.92■■■■□ 3.66
PSEN1-225ENST00000560005 FBLN2P98095 1184 aa37.9■■■■□ 3.66
PSEN1-225ENST00000560005 TRHP20396 242 aaPredicted RBP37.88■■■■□ 3.65
PSEN1-225ENST00000560005 POLA1P09884 1462 aaPredicted RBP37.84■■■■□ 3.65
PSEN1-225ENST00000560005 RAD54L2Q9Y4B4 1467 aa37.73■■■■□ 3.63
PSEN1-225ENST00000560005 TDRD9Q8NDG6 1382 aaKnown RBP37.68■■■■□ 3.62
PSEN1-225ENST00000560005 SOGA1O94964 1423 aa37.65■■■■□ 3.62
PSEN1-225ENST00000560005 SNAPC4Q5SXM2 1469 aa37.6■■■■□ 3.61
PSEN1-225ENST00000560005 CLASP1Q7Z460 1538 aa37.56■■■■□ 3.6
PSEN1-225ENST00000560005 FGD5Q6ZNL6 1462 aa37.52■■■■□ 3.6
PSEN1-225ENST00000560005 WDR97A6NE52 1622 aa37.5■■■■□ 3.59
PSEN1-225ENST00000560005 CHMP7Q8WUX9 453 aaPredicted RBP37.49■■■■□ 3.59
PSEN1-225ENST00000560005 SYNJ1O43426 1573 aa37.47■■■■□ 3.59
PSEN1-225ENST00000560005 MAGI1Q96QZ7 1491 aaPredicted RBP37.45■■■■□ 3.59
PSEN1-225ENST00000560005 GRIN2BQ13224 1484 aa37.39■■■■□ 3.58
PSEN1-225ENST00000560005 CUX1P39880 1505 aa37.39■■■■□ 3.58
PSEN1-225ENST00000560005 SYNJ2O15056 1496 aa37.34■■■■□ 3.57
PSEN1-225ENST00000560005 AEBP2Q6ZN18 517 aaPredicted RBP37.22■■■■□ 3.55
PSEN1-225ENST00000560005 GAPVD1Q14C86 1478 aa37.2■■■■□ 3.55
PSEN1-225ENST00000560005 PBRM1Q86U86 1689 aa37.2■■■■□ 3.55
PSEN1-225ENST00000560005 ABCA5Q8WWZ7 1642 aa37.04■■■■□ 3.52
PSEN1-225ENST00000560005 ABCA10Q8WWZ4 1543 aa37.04■■■■□ 3.52
PSEN1-225ENST00000560005 ERCC6L2Q5T890 1561 aa36.95■■■■□ 3.51
PSEN1-225ENST00000560005 GRIN2AQ12879 1464 aa36.92■■■■□ 3.5
PSEN1-225ENST00000560005 ADAMTS12P58397 1594 aa36.83■■■■□ 3.49
PSEN1-225ENST00000560005 CEP170Q5SW79 1584 aa36.83■■■■□ 3.49
PSEN1-225ENST00000560005 NUP160Q12769 1436 aa36.82■■■■□ 3.48
PSEN1-225ENST00000560005 WRNQ14191 1432 aaPredicted RBP eCLIP36.77■■■■□ 3.48
PSEN1-225ENST00000560005 SHROOM2Q13796 1616 aa36.7■■■■□ 3.47
PSEN1-225ENST00000560005 FHAD1B1AJZ9 1412 aa36.68■■■■□ 3.46
PSEN1-225ENST00000560005 TOP2BQ02880 1626 aa36.6■■■■□ 3.45
PSEN1-225ENST00000560005 BIVM-ERCC5R4GMW8 1640 aa36.6■■■■□ 3.45
PSEN1-225ENST00000560005 KIF13AQ9H1H9 1805 aa36.57■■■■□ 3.44
PSEN1-225ENST00000560005 SUPT5HO00267 1087 aaKnown RBP36.56■■■■□ 3.44
PSEN1-225ENST00000560005 ERICH3Q5RHP9 1530 aa36.55■■■■□ 3.44
PSEN1-225ENST00000560005 PRG4Q92954 1404 aaPredicted RBP36.52■■■■□ 3.44
PSEN1-225ENST00000560005 JPH4Q96JJ6 628 aa36.44■■■■□ 3.42
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms