RNA–Protein interactions for RNA: ENST00000560003.1

SEMA4B-214, Transcript of semaphorin 4B, humanhuman

TSL 3

Gene SEMA4B, Length 566 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4B-214ENST00000560003 NISCHQ9Y2I1 1504 aa21.64■■□□□ 1.05
SEMA4B-214ENST00000560003 CCDC180Q9P1Z9 1646 aa19.16■□□□□ 0.66
SEMA4B-214ENST00000560003 ABCC9O60706 1549 aa18.85■□□□□ 0.61
SEMA4B-214ENST00000560003 AEBP2Q6ZN18 517 aaPredicted RBP18.78■□□□□ 0.6
SEMA4B-214ENST00000560003 CHIC1Q5VXU3 224 aa18.67■□□□□ 0.58
SEMA4B-214ENST00000560003 DCAF8L2P0C7V8 631 aa18.27■□□□□ 0.52
SEMA4B-214ENST00000560003 RB1CC1Q8TDY2 1594 aa18.14■□□□□ 0.49
SEMA4B-214ENST00000560003 NACADO15069 1562 aa18.13■□□□□ 0.49
SEMA4B-214ENST00000560003 MYO15BQ96JP2 1530 aa18.04■□□□□ 0.48
SEMA4B-214ENST00000560003 ZCCHC6Q5VYS8 1495 aaKnown RBP17.97■□□□□ 0.47
SEMA4B-214ENST00000560003 DCAF1Q9Y4B6 1507 aa17.93■□□□□ 0.46
SEMA4B-214ENST00000560003 PABPN1Q86U42 306 aaKnown RBP eCLIP17.69■□□□□ 0.42
SEMA4B-214ENST00000560003 UNC13AQ9UPW8 1703 aa17.48■□□□□ 0.39
SEMA4B-214ENST00000560003 BICRAQ9NZM4 1560 aa17.48■□□□□ 0.39
SEMA4B-214ENST00000560003 SCRIBQ14160 1630 aa17.47■□□□□ 0.39
SEMA4B-214ENST00000560003 SHROOM4Q9ULL8 1493 aa17.46■□□□□ 0.39
SEMA4B-214ENST00000560003 DNAJC5BQ9UF47 199 aa17.36■□□□□ 0.37
SEMA4B-214ENST00000560003 EIF4G1Q04637 1599 aaKnown RBP17.08■□□□□ 0.32
SEMA4B-214ENST00000560003 CC2D2AQ9P2K1 1620 aa17■□□□□ 0.31
SEMA4B-214ENST00000560003 CECR2Q9BXF3 1484 aa16.99■□□□□ 0.31
SEMA4B-214ENST00000560003 BAZ1AQ9NRL2 1556 aaPredicted RBP16.78■□□□□ 0.28
SEMA4B-214ENST00000560003 NCAPD3P42695 1498 aa16.77■□□□□ 0.28
SEMA4B-214ENST00000560003 ATAD2BQ9ULI0 1458 aa16.73■□□□□ 0.27
SEMA4B-214ENST00000560003 SMARCA2P51531 1590 aa16.72■□□□□ 0.27
SEMA4B-214ENST00000560003 SMARCA4P51532 1647 aa16.72■□□□□ 0.27
SEMA4B-214ENST00000560003 MROH2BQ7Z745 1585 aa16.62■□□□□ 0.25
SEMA4B-214ENST00000560003 BAZ1BQ9UIG0 1483 aaKnown RBP16.6■□□□□ 0.25
SEMA4B-214ENST00000560003 HMGXB3Q12766 1538 aa16.6■□□□□ 0.25
SEMA4B-214ENST00000560003 PEG3Q9GZU2 1588 aa16.6■□□□□ 0.25
SEMA4B-214ENST00000560003 RSF1Q96T23 1441 aaPredicted RBP16.5■□□□□ 0.23
SEMA4B-214ENST00000560003 PHF23Q9BUL5 403 aaPredicted RBP16.48■□□□□ 0.23
SEMA4B-214ENST00000560003 WIZO95785 1651 aa16.38■□□□□ 0.21
SEMA4B-214ENST00000560003 ERCC6Q03468 1493 aa16.33■□□□□ 0.2
SEMA4B-214ENST00000560003 CADPSQ9ULU8 1353 aa16.31■□□□□ 0.2
SEMA4B-214ENST00000560003 PDS5BQ9NTI5 1447 aa16.28■□□□□ 0.2
SEMA4B-214ENST00000560003 TOP2AP11388 1531 aaKnown RBP16.28■□□□□ 0.2
SEMA4B-214ENST00000560003 LAMC3Q9Y6N6 1575 aa16.27■□□□□ 0.2
SEMA4B-214ENST00000560003 NESP48681 1621 aa16.25■□□□□ 0.19
SEMA4B-214ENST00000560003 CUX2O14529 1486 aa16.16■□□□□ 0.18
SEMA4B-214ENST00000560003 CFTRP13569 1480 aa16.15■□□□□ 0.18
SEMA4B-214ENST00000560003 SUPT5HO00267 1087 aaKnown RBP16.14■□□□□ 0.17
SEMA4B-214ENST00000560003 CCDC88BA6NC98 1476 aa16.14■□□□□ 0.17
SEMA4B-214ENST00000560003 FANCD2Q9BXW9 1451 aa16.06■□□□□ 0.16
SEMA4B-214ENST00000560003 CEP164Q9UPV0 1460 aa16.04■□□□□ 0.16
SEMA4B-214ENST00000560003 MRC2Q9UBG0 1479 aa16.02■□□□□ 0.15
SEMA4B-214ENST00000560003 KIF21AQ7Z4S6 1674 aa15.96■□□□□ 0.15
SEMA4B-214ENST00000560003 THOC2Q8NI27 1593 aaKnown RBP15.95■□□□□ 0.14
SEMA4B-214ENST00000560003 WDR62O43379 1518 aa15.91■□□□□ 0.14
SEMA4B-214ENST00000560003 ABCC8Q09428 1581 aa15.89■□□□□ 0.13
SEMA4B-214ENST00000560003 SENP3Q9H4L4 574 aaPredicted RBP15.87■□□□□ 0.13
SEMA4B-214ENST00000560003 URB2Q14146 1524 aaKnown RBP15.84■□□□□ 0.13
SEMA4B-214ENST00000560003 PRDM2Q13029 1718 aa15.81■□□□□ 0.12
SEMA4B-214ENST00000560003 DNAJC5Q9H3Z4 198 aa15.78■□□□□ 0.12
SEMA4B-214ENST00000560003 TOPBP1Q92547 1522 aa15.76■□□□□ 0.11
SEMA4B-214ENST00000560003 IFT140Q96RY7 1462 aa15.74■□□□□ 0.11
SEMA4B-214ENST00000560003 DNMBPQ6XZF7 1577 aa15.73■□□□□ 0.11
SEMA4B-214ENST00000560003 SOGA1O94964 1423 aa15.67■□□□□ 0.1
SEMA4B-214ENST00000560003 POLA1P09884 1462 aaPredicted RBP15.62■□□□□ 0.09
SEMA4B-214ENST00000560003 OSCARQ8IYS5 282 aa15.61■□□□□ 0.09
SEMA4B-214ENST00000560003 CUX1P39880 1505 aa15.59■□□□□ 0.09
SEMA4B-214ENST00000560003 WRNQ14191 1432 aaPredicted RBP eCLIP15.58■□□□□ 0.08
SEMA4B-214ENST00000560003 FGD5Q6ZNL6 1462 aa15.58■□□□□ 0.08
SEMA4B-214ENST00000560003 ZNF608Q9ULD9 1512 aaPredicted RBP15.58■□□□□ 0.08
SEMA4B-214ENST00000560003 RAD54L2Q9Y4B4 1467 aa15.55■□□□□ 0.08
SEMA4B-214ENST00000560003 AQRO60306 1485 aaKnown RBP eCLIP15.54■□□□□ 0.084e-8■■■■■ 34.1
SEMA4B-214ENST00000560003 TDRD9Q8NDG6 1382 aaKnown RBP15.54■□□□□ 0.08
SEMA4B-214ENST00000560003 TARBP1Q13395 1621 aaKnown RBP15.53■□□□□ 0.08
SEMA4B-214ENST00000560003 PLPPR3Q6T4P5 718 aa15.51■□□□□ 0.07
SEMA4B-214ENST00000560003 FBLN2P98095 1184 aa15.49■□□□□ 0.07
SEMA4B-214ENST00000560003 WDR97A6NE52 1622 aa15.49■□□□□ 0.07
SEMA4B-214ENST00000560003 CHMP7Q8WUX9 453 aaPredicted RBP15.47■□□□□ 0.07
SEMA4B-214ENST00000560003 ABCA10Q8WWZ4 1543 aa15.46■□□□□ 0.07
SEMA4B-214ENST00000560003 TOP2BQ02880 1626 aa15.46■□□□□ 0.06
SEMA4B-214ENST00000560003 GRIN2BQ13224 1484 aa15.46■□□□□ 0.06
SEMA4B-214ENST00000560003 EIF4G3O43432 1585 aaKnown RBP15.45■□□□□ 0.06
SEMA4B-214ENST00000560003 GAPVD1Q14C86 1478 aa15.44■□□□□ 0.06
SEMA4B-214ENST00000560003 BIVM-ERCC5R4GMW8 1640 aa15.41■□□□□ 0.06
SEMA4B-214ENST00000560003 MAGI1Q96QZ7 1491 aaPredicted RBP15.4■□□□□ 0.06
SEMA4B-214ENST00000560003 SYNJ1O43426 1573 aa15.4■□□□□ 0.06
SEMA4B-214ENST00000560003 SNAPC4Q5SXM2 1469 aa15.37■□□□□ 0.05
SEMA4B-214ENST00000560003 SYNJ2O15056 1496 aa15.34■□□□□ 0.05
SEMA4B-214ENST00000560003 TRIM41Q8WV44 630 aa15.32■□□□□ 0.04
SEMA4B-214ENST00000560003 KIF27Q86VH2 1401 aa15.31■□□□□ 0.04
SEMA4B-214ENST00000560003 ABCA5Q8WWZ7 1642 aa15.29■□□□□ 0.04
SEMA4B-214ENST00000560003 FHAD1B1AJZ9 1412 aa15.29■□□□□ 0.04
SEMA4B-214ENST00000560003 ERICH3Q5RHP9 1530 aa15.27■□□□□ 0.04
SEMA4B-214ENST00000560003 IGF1RP08069 1367 aa15.24■□□□□ 0.03
SEMA4B-214ENST00000560003 PBRM1Q86U86 1689 aa15.22■□□□□ 0.03
SEMA4B-214ENST00000560003 CHD1O14646 1710 aa15.21■□□□□ 0.03
SEMA4B-214ENST00000560003 GRIN2AQ12879 1464 aa15.2■□□□□ 0.02
SEMA4B-214ENST00000560003 CYB5RLQ6IPT4 315 aa15.17■□□□□ 0.02
SEMA4B-214ENST00000560003 ADAMTS12P58397 1594 aa15.16■□□□□ 0.02
SEMA4B-214ENST00000560003 CARMIL1Q5VZK9 1371 aa15.16■□□□□ 0.02
SEMA4B-214ENST00000560003 ARHGEF11O15085 1522 aa15.16■□□□□ 0.02
SEMA4B-214ENST00000560003 NUP160Q12769 1436 aa15.15■□□□□ 0.02
SEMA4B-214ENST00000560003 CLASP1Q7Z460 1538 aa15.14■□□□□ 0.01
SEMA4B-214ENST00000560003 JPH4Q96JJ6 628 aa15.13■□□□□ 0.01
SEMA4B-214ENST00000560003 RIMBP3CA6NJZ7 1639 aa15.11■□□□□ 0.01
SEMA4B-214ENST00000560003 RIMBP3BA6NNM3 1639 aa15.11■□□□□ 0.01
SEMA4B-214ENST00000560003 RIMBP3Q9UFD9 1639 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms