RNA–Protein interactions for RNA: ENST00000559934.5

PSMA4-215, Transcript of proteasome subunit alpha 4, humanhuman

TSL 1 (best)

Gene PSMA4, Length 2,741 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSMA4-215ENST00000559934 NISCHQ9Y2I1 1504 aa43.11■■■■■ 4.49
PSMA4-215ENST00000559934 SHROOM4Q9ULL8 1493 aa37.69■■■■□ 3.62
PSMA4-215ENST00000559934 SUPT5HO00267 1087 aaKnown RBP37.27■■■■□ 3.56
PSMA4-215ENST00000559934 HRCP23327 699 aa36.7■■■■□ 3.47
PSMA4-215ENST00000559934 MYO15BQ96JP2 1530 aa36.68■■■■□ 3.46
PSMA4-215ENST00000559934 ZCCHC6Q5VYS8 1495 aaKnown RBP36.61■■■■□ 3.45
PSMA4-215ENST00000559934 CHIC1Q5VXU3 224 aa36.49■■■■□ 3.43
PSMA4-215ENST00000559934 PCGF6Q9BYE7 350 aa36.27■■■■□ 3.4
PSMA4-215ENST00000559934 CCDC180Q9P1Z9 1646 aa36.14■■■■□ 3.38
PSMA4-215ENST00000559934 PPARGC1BQ86YN6 1023 aaKnown RBP36.04■■■■□ 3.36
PSMA4-215ENST00000559934 DCAF8L2P0C7V8 631 aa35.86■■■■□ 3.33
PSMA4-215ENST00000559934 DCAF1Q9Y4B6 1507 aa35.66■■■■□ 3.3
PSMA4-215ENST00000559934 LOC105371045A0A1W2PR82 267 aa35.6■■■■□ 3.29
PSMA4-215ENST00000559934 TRIM26Q12899 539 aaPredicted RBP35.22■■■■□ 3.23
PSMA4-215ENST00000559934 ABCC9O60706 1549 aa34.72■■■■□ 3.15
PSMA4-215ENST00000559934 ZEB1P37275 1124 aaPredicted RBP34.68■■■■□ 3.14
PSMA4-215ENST00000559934 TRIM41Q8WV44 630 aa34.52■■■■□ 3.12
PSMA4-215ENST00000559934 RSF1Q96T23 1441 aaPredicted RBP34.49■■■■□ 3.11
PSMA4-215ENST00000559934 FAM9AQ8IZU1 332 aaPredicted RBP34.48■■■■□ 3.11
PSMA4-215ENST00000559934 SCAF1Q9H7N4 1312 aaKnown RBP34.42■■■■□ 3.1
PSMA4-215ENST00000559934 PELP1Q8IZL8 1130 aaKnown RBP34.36■■■■□ 3.09
PSMA4-215ENST00000559934 RB1CC1Q8TDY2 1594 aa34.34■■■■□ 3.09
PSMA4-215ENST00000559934 EHMT2Q96KQ7 1210 aa34.32■■■■□ 3.09
PSMA4-215ENST00000559934 SCRIBQ14160 1630 aa34.31■■■■□ 3.08
PSMA4-215ENST00000559934 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.84■■■■□ 3.01
PSMA4-215ENST00000559934 CECR2Q9BXF3 1484 aa33.75■■■□□ 2.99
PSMA4-215ENST00000559934 ACIN1Q9UKV3 1341 aaKnown RBP33.72■■■□□ 2.99
PSMA4-215ENST00000559934 CCER1Q8TC90 406 aaPredicted RBP33.72■■■□□ 2.99
PSMA4-215ENST00000559934 NEUROD1Q13562 356 aa33.7■■■□□ 2.98
PSMA4-215ENST00000559934 MROH2BQ7Z745 1585 aa33.67■■■□□ 2.98
PSMA4-215ENST00000559934 WIZO95785 1651 aa33.57■■■□□ 2.96
PSMA4-215ENST00000559934 DIEXFQ68CQ4 756 aaKnown RBP33.48■■■□□ 2.95
PSMA4-215ENST00000559934 GTF3C3Q9Y5Q9 886 aa33.43■■■□□ 2.94
PSMA4-215ENST00000559934 TTBK1Q5TCY1 1321 aaPredicted RBP33.4■■■□□ 2.94
PSMA4-215ENST00000559934 EIF4G1Q04637 1599 aaKnown RBP33.35■■■□□ 2.93
PSMA4-215ENST00000559934 CENPBP07199 599 aaPredicted RBP33.32■■■□□ 2.93
PSMA4-215ENST00000559934 BAZ1AQ9NRL2 1556 aaPredicted RBP33.28■■■□□ 2.92
PSMA4-215ENST00000559934 NACADO15069 1562 aa33.26■■■□□ 2.91
PSMA4-215ENST00000559934 WRNQ14191 1432 aaPredicted RBP eCLIP33.18■■■□□ 2.9
PSMA4-215ENST00000559934 ABCC8Q09428 1581 aa33.16■■■□□ 2.9
PSMA4-215ENST00000559934 CEP162Q5TB80 1403 aa33.13■■■□□ 2.89
PSMA4-215ENST00000559934 CCDC88BA6NC98 1476 aa33.12■■■□□ 2.89
PSMA4-215ENST00000559934 SOGA1O94964 1423 aa32.98■■■□□ 2.87
PSMA4-215ENST00000559934 ZNF316A6NFI3 1004 aaPredicted RBP32.97■■■□□ 2.87
PSMA4-215ENST00000559934 TNIKQ9UKE5 1360 aa32.93■■■□□ 2.86
PSMA4-215ENST00000559934 YTHDC1Q96MU7 727 aaKnown RBP32.9■■■□□ 2.86
PSMA4-215ENST00000559934 TOP2AP11388 1531 aaKnown RBP32.89■■■□□ 2.86
PSMA4-215ENST00000559934 RUSC2Q8N2Y8 1516 aa32.82■■■□□ 2.84
PSMA4-215ENST00000559934 UBTFP17480 764 aaKnown RBP32.81■■■□□ 2.84
PSMA4-215ENST00000559934 SMARCA2P51531 1590 aa32.81■■■□□ 2.84
PSMA4-215ENST00000559934 MYT1Q01538 1121 aa32.77■■■□□ 2.84
PSMA4-215ENST00000559934 CSRNP3Q8WYN3 585 aa32.77■■■□□ 2.84
PSMA4-215ENST00000559934 MIER1Q8N108 512 aa32.71■■■□□ 2.83
PSMA4-215ENST00000559934 SMARCA4P51532 1647 aa32.7■■■□□ 2.82
PSMA4-215ENST00000559934 EEA1Q15075 1411 aa32.66■■■□□ 2.82
PSMA4-215ENST00000559934 HNRNPUL2Q1KMD3 747 aaKnown RBP32.64■■■□□ 2.81
PSMA4-215ENST00000559934 GOLGA3Q08378 1498 aa32.61■■■□□ 2.81
PSMA4-215ENST00000559934 CLIP1P30622 1438 aa32.33■■■□□ 2.77
PSMA4-215ENST00000559934 CEP164Q9UPV0 1460 aa32.32■■■□□ 2.76
PSMA4-215ENST00000559934 UNC13AQ9UPW8 1703 aa32.31■■■□□ 2.76
PSMA4-215ENST00000559934 KIF21BO75037 1637 aa32.27■■■□□ 2.76
PSMA4-215ENST00000559934 VPS8Q8N3P4 1428 aa32.25■■■□□ 2.75
PSMA4-215ENST00000559934 SYNJ1O43426 1573 aa32.24■■■□□ 2.75
PSMA4-215ENST00000559934 RANGAP1P46060 587 aaPredicted RBP32.17■■■□□ 2.74
PSMA4-215ENST00000559934 APLP2Q06481 763 aa32.16■■■□□ 2.74
PSMA4-215ENST00000559934 RAPGEF2Q9Y4G8 1499 aa32.1■■■□□ 2.73
PSMA4-215ENST00000559934 BAZ1BQ9UIG0 1483 aaKnown RBP32.04■■■□□ 2.72
PSMA4-215ENST00000559934 DHX57Q6P158 1386 aaKnown RBP31.98■■■□□ 2.71
PSMA4-215ENST00000559934 SUPT16HQ9Y5B9 1047 aaKnown RBP31.97■■■□□ 2.71
PSMA4-215ENST00000559934 PABPN1Q86U42 306 aaKnown RBP eCLIP31.97■■■□□ 2.71
PSMA4-215ENST00000559934 PEG3Q9GZU2 1588 aa31.89■■■□□ 2.7
PSMA4-215ENST00000559934 CLSPNQ9HAW4 1339 aa31.89■■■□□ 2.69
PSMA4-215ENST00000559934 BICRAQ9NZM4 1560 aa31.82■■■□□ 2.68
PSMA4-215ENST00000559934 KANK4Q5T7N3 995 aaPredicted RBP31.78■■■□□ 2.68
PSMA4-215ENST00000559934 ARAP1Q96P48 1450 aa31.73■■■□□ 2.67
PSMA4-215ENST00000559934 TSHZ2Q9NRE2 1034 aa31.68■■■□□ 2.66
PSMA4-215ENST00000559934 ATAD2BQ9ULI0 1458 aa31.67■■■□□ 2.66
PSMA4-215ENST00000559934 TOP2BQ02880 1626 aa31.66■■■□□ 2.66
PSMA4-215ENST00000559934 KCNH8Q96L42 1107 aa31.6■■■□□ 2.65
PSMA4-215ENST00000559934 RRBP1Q9P2E9 1410 aaKnown RBP31.59■■■□□ 2.65
PSMA4-215ENST00000559934 ERICH3Q5RHP9 1530 aa31.58■■■□□ 2.65
PSMA4-215ENST00000559934 PRXQ9BXM0 1461 aa31.58■■■□□ 2.65
PSMA4-215ENST00000559934 BIVM-ERCC5R4GMW8 1640 aa31.51■■■□□ 2.64
PSMA4-215ENST00000559934 ITGAEP38570 1179 aa31.51■■■□□ 2.64
PSMA4-215ENST00000559934 CUX2O14529 1486 aa31.5■■■□□ 2.63
PSMA4-215ENST00000559934 CCNB3Q8WWL7 1395 aa31.46■■■□□ 2.63
PSMA4-215ENST00000559934 BCANQ96GW7 911 aa31.4■■■□□ 2.62
PSMA4-215ENST00000559934 ANP32EQ9BTT0 268 aa31.4■■■□□ 2.62
PSMA4-215ENST00000559934 MAPKBP1O60336 1514 aa31.35■■■□□ 2.61
PSMA4-215ENST00000559934 RAB3GAP2Q9H2M9 1393 aa31.34■■■□□ 2.61
PSMA4-215ENST00000559934 ARHGAP35Q9NRY4 1499 aa31.32■■■□□ 2.6
PSMA4-215ENST00000559934 CUX1P39880 1505 aa31.27■■■□□ 2.6
PSMA4-215ENST00000559934 FKBP8Q14318 412 aa31.26■■■□□ 2.59
PSMA4-215ENST00000559934 DDX10Q13206 875 aaKnown RBP31.25■■■□□ 2.59
PSMA4-215ENST00000559934 KIF27Q86VH2 1401 aa31.24■■■□□ 2.59
PSMA4-215ENST00000559934 WDR97A6NE52 1622 aa31.2■■■□□ 2.59
PSMA4-215ENST00000559934 SIN3AQ96ST3 1273 aa31.17■■■□□ 2.58
PSMA4-215ENST00000559934 SETD5Q9C0A6 1442 aa31.12■■■□□ 2.57
PSMA4-215ENST00000559934 TIAM1Q13009 1591 aa31.09■■■□□ 2.57
PSMA4-215ENST00000559934 HIRIP3Q9BW71 556 aaPredicted RBP31.06■■■□□ 2.56
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms