RNA–Protein interactions for RNA: ENST00000559061.5

SNX1-204, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 550 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-204ENST00000559061 NISCHQ9Y2I1 1504 aa27.96■■■□□ 2.07
SNX1-204ENST00000559061 CCDC180Q9P1Z9 1646 aa24.82■■□□□ 1.56
SNX1-204ENST00000559061 ABCC9O60706 1549 aa24.1■■□□□ 1.45
SNX1-204ENST00000559061 ZCCHC6Q5VYS8 1495 aaKnown RBP23.36■■□□□ 1.33
SNX1-204ENST00000559061 NACADO15069 1562 aa23.23■■□□□ 1.31
SNX1-204ENST00000559061 RB1CC1Q8TDY2 1594 aa23.21■■□□□ 1.31
SNX1-204ENST00000559061 MYO15BQ96JP2 1530 aa23.17■■□□□ 1.3
SNX1-204ENST00000559061 DCAF1Q9Y4B6 1507 aa23.14■■□□□ 1.3
SNX1-204ENST00000559061 DCAF8L2P0C7V8 631 aa23.06■■□□□ 1.28
SNX1-204ENST00000559061 UNC13AQ9UPW8 1703 aa22.88■■□□□ 1.25
SNX1-204ENST00000559061 BICRAQ9NZM4 1560 aa22.67■■□□□ 1.22
SNX1-204ENST00000559061 SCRIBQ14160 1630 aa22.65■■□□□ 1.22
SNX1-204ENST00000559061 PABPN1Q86U42 306 aaKnown RBP eCLIP22.49■■□□□ 1.19
SNX1-204ENST00000559061 SHROOM4Q9ULL8 1493 aa22.28■■□□□ 1.16
SNX1-204ENST00000559061 DNAJC5BQ9UF47 199 aa22.05■■□□□ 1.12
SNX1-204ENST00000559061 EIF4G1Q04637 1599 aaKnown RBP21.96■■□□□ 1.11
SNX1-204ENST00000559061 CC2D2AQ9P2K1 1620 aa21.84■■□□□ 1.09
SNX1-204ENST00000559061 CECR2Q9BXF3 1484 aa21.82■■□□□ 1.08
SNX1-204ENST00000559061 SMARCA4P51532 1647 aa21.69■■□□□ 1.06
SNX1-204ENST00000559061 BAZ1AQ9NRL2 1556 aaPredicted RBP21.61■■□□□ 1.05
SNX1-204ENST00000559061 MROH2BQ7Z745 1585 aa21.6■■□□□ 1.05
SNX1-204ENST00000559061 ATAD2BQ9ULI0 1458 aa21.51■■□□□ 1.03
SNX1-204ENST00000559061 PEG3Q9GZU2 1588 aa21.49■■□□□ 1.03
SNX1-204ENST00000559061 NCAPD3P42695 1498 aa21.45■■□□□ 1.02
SNX1-204ENST00000559061 SMARCA2P51531 1590 aa21.43■■□□□ 1.02
SNX1-204ENST00000559061 HMGXB3Q12766 1538 aa21.39■■□□□ 1.01
SNX1-204ENST00000559061 WIZO95785 1651 aa21.38■■□□□ 1.01
SNX1-204ENST00000559061 RSF1Q96T23 1441 aaPredicted RBP21.36■■□□□ 1.01
SNX1-204ENST00000559061 BAZ1BQ9UIG0 1483 aaKnown RBP21.28■■□□□ 1
SNX1-204ENST00000559061 TOP2AP11388 1531 aaKnown RBP21.12■□□□□ 0.97
SNX1-204ENST00000559061 NESP48681 1621 aa20.96■□□□□ 0.95
SNX1-204ENST00000559061 AEBP2Q6ZN18 517 aaPredicted RBP20.9■□□□□ 0.94
SNX1-204ENST00000559061 CCDC88BA6NC98 1476 aa20.86■□□□□ 0.93
SNX1-204ENST00000559061 LAMC3Q9Y6N6 1575 aa20.85■□□□□ 0.93
SNX1-204ENST00000559061 CADPSQ9ULU8 1353 aa20.79■□□□□ 0.92
SNX1-204ENST00000559061 SUPT5HO00267 1087 aaKnown RBP20.77■□□□□ 0.92
SNX1-204ENST00000559061 CFTRP13569 1480 aa20.75■□□□□ 0.91
SNX1-204ENST00000559061 KIF21AQ7Z4S6 1674 aa20.73■□□□□ 0.91
SNX1-204ENST00000559061 PRDM2Q13029 1718 aa20.68■□□□□ 0.9
SNX1-204ENST00000559061 THOC2Q8NI27 1593 aaKnown RBP20.65■□□□□ 0.9
SNX1-204ENST00000559061 ERCC6Q03468 1493 aa20.65■□□□□ 0.9
SNX1-204ENST00000559061 PDS5BQ9NTI5 1447 aa20.61■□□□□ 0.89
SNX1-204ENST00000559061 FANCD2Q9BXW9 1451 aa20.58■□□□□ 0.89
SNX1-204ENST00000559061 CEP164Q9UPV0 1460 aa20.51■□□□□ 0.87
SNX1-204ENST00000559061 MRC2Q9UBG0 1479 aa20.48■□□□□ 0.87
SNX1-204ENST00000559061 WDR62O43379 1518 aa20.48■□□□□ 0.87
SNX1-204ENST00000559061 CUX2O14529 1486 aa20.44■□□□□ 0.86
SNX1-204ENST00000559061 URB2Q14146 1524 aaKnown RBP20.44■□□□□ 0.86
SNX1-204ENST00000559061 TOPBP1Q92547 1522 aa20.31■□□□□ 0.84
SNX1-204ENST00000559061 DNMBPQ6XZF7 1577 aa20.29■□□□□ 0.84
SNX1-204ENST00000559061 CUX1P39880 1505 aa20.25■□□□□ 0.83
SNX1-204ENST00000559061 ABCC8Q09428 1581 aa20.18■□□□□ 0.82
SNX1-204ENST00000559061 SYNJ1O43426 1573 aa20.14■□□□□ 0.81
SNX1-204ENST00000559061 POLA1P09884 1462 aaPredicted RBP20.14■□□□□ 0.81
SNX1-204ENST00000559061 TARBP1Q13395 1621 aaKnown RBP20.13■□□□□ 0.81
SNX1-204ENST00000559061 BIVM-ERCC5R4GMW8 1640 aa20.11■□□□□ 0.81
SNX1-204ENST00000559061 FGD5Q6ZNL6 1462 aa20.11■□□□□ 0.81
SNX1-204ENST00000559061 IFT140Q96RY7 1462 aa20.08■□□□□ 0.81
SNX1-204ENST00000559061 TOP2BQ02880 1626 aa20.08■□□□□ 0.8
SNX1-204ENST00000559061 ZNF608Q9ULD9 1512 aaPredicted RBP20.07■□□□□ 0.8
SNX1-204ENST00000559061 WRNQ14191 1432 aaPredicted RBP eCLIP20.07■□□□□ 0.8
SNX1-204ENST00000559061 RAD54L2Q9Y4B4 1467 aa20.06■□□□□ 0.8
SNX1-204ENST00000559061 WDR97A6NE52 1622 aa20.05■□□□□ 0.8
SNX1-204ENST00000559061 EIF4G3O43432 1585 aaKnown RBP20■□□□□ 0.79
SNX1-204ENST00000559061 SOGA1O94964 1423 aa19.97■□□□□ 0.79
SNX1-204ENST00000559061 AQRO60306 1485 aaKnown RBP eCLIP19.92■□□□□ 0.789e-7■■■■□ 26.4
SNX1-204ENST00000559061 ABCA10Q8WWZ4 1543 aa19.92■□□□□ 0.78
SNX1-204ENST00000559061 ABCA5Q8WWZ7 1642 aa19.89■□□□□ 0.77
SNX1-204ENST00000559061 TDRD9Q8NDG6 1382 aaKnown RBP19.87■□□□□ 0.77
SNX1-204ENST00000559061 PBRM1Q86U86 1689 aa19.82■□□□□ 0.76
SNX1-204ENST00000559061 GAPVD1Q14C86 1478 aa19.78■□□□□ 0.76
SNX1-204ENST00000559061 SNAPC4Q5SXM2 1469 aa19.75■□□□□ 0.75
SNX1-204ENST00000559061 GRIN2BQ13224 1484 aa19.74■□□□□ 0.75
SNX1-204ENST00000559061 CHD1O14646 1710 aa19.73■□□□□ 0.75
SNX1-204ENST00000559061 MAGI1Q96QZ7 1491 aaPredicted RBP19.69■□□□□ 0.74
SNX1-204ENST00000559061 ADAMTS12P58397 1594 aa19.67■□□□□ 0.74
SNX1-204ENST00000559061 ERICH3Q5RHP9 1530 aa19.66■□□□□ 0.74
SNX1-204ENST00000559061 RUSC2Q8N2Y8 1516 aa19.62■□□□□ 0.73
SNX1-204ENST00000559061 DNAJC5Q9H3Z4 198 aa19.62■□□□□ 0.73
SNX1-204ENST00000559061 SYNJ2O15056 1496 aa19.61■□□□□ 0.73
SNX1-204ENST00000559061 KIF27Q86VH2 1401 aa19.59■□□□□ 0.73
SNX1-204ENST00000559061 CHIC1Q5VXU3 224 aa19.57■□□□□ 0.72
SNX1-204ENST00000559061 TRIM41Q8WV44 630 aa19.56■□□□□ 0.72
SNX1-204ENST00000559061 IGF1RP08069 1367 aa19.56■□□□□ 0.72
SNX1-204ENST00000559061 FHAD1B1AJZ9 1412 aa19.54■□□□□ 0.72
SNX1-204ENST00000559061 GRIN2AQ12879 1464 aa19.54■□□□□ 0.72
SNX1-204ENST00000559061 CLASP1Q7Z460 1538 aa19.53■□□□□ 0.72
SNX1-204ENST00000559061 CUL7Q14999 1698 aa19.52■□□□□ 0.71
SNX1-204ENST00000559061 OSCARQ8IYS5 282 aa19.51■□□□□ 0.71
SNX1-204ENST00000559061 CEP170Q5SW79 1584 aa19.5■□□□□ 0.71
SNX1-204ENST00000559061 FBLN2P98095 1184 aa19.48■□□□□ 0.71
SNX1-204ENST00000559061 NUP160Q12769 1436 aa19.47■□□□□ 0.71
SNX1-204ENST00000559061 CHMP7Q8WUX9 453 aaPredicted RBP19.46■□□□□ 0.71
SNX1-204ENST00000559061 CARMIL1Q5VZK9 1371 aa19.4■□□□□ 0.7
SNX1-204ENST00000559061 RIMBP3CA6NJZ7 1639 aa19.38■□□□□ 0.69
SNX1-204ENST00000559061 RIMBP3BA6NNM3 1639 aa19.38■□□□□ 0.69
SNX1-204ENST00000559061 RIMBP3Q9UFD9 1639 aa19.38■□□□□ 0.69
SNX1-204ENST00000559061 PRXQ9BXM0 1461 aa19.36■□□□□ 0.69
SNX1-204ENST00000559061 SHROOM2Q13796 1616 aa19.36■□□□□ 0.69
SNX1-204ENST00000559061 ARHGEF11O15085 1522 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms