RNA–Protein interactions for RNA: ENST00000558952.1

CRNDE-205, Transcript of colorectal neoplasia differentially expressed, humanhuman

TSL 4

Gene CRNDE, Length 600 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRNDE-205ENST00000558952 NISCHQ9Y2I1 1504 aa52.77■■■■■ 6.04
CRNDE-205ENST00000558952 CCDC180Q9P1Z9 1646 aa47.12■■■■■ 5.13
CRNDE-205ENST00000558952 ABCC9O60706 1549 aa46.55■■■■■ 5.04
CRNDE-205ENST00000558952 RB1CC1Q8TDY2 1594 aa44.6■■■■■ 4.73
CRNDE-205ENST00000558952 NACADO15069 1562 aa44.42■■■■■ 4.7
CRNDE-205ENST00000558952 DCAF8L2P0C7V8 631 aa44.37■■■■■ 4.69
CRNDE-205ENST00000558952 MYO15BQ96JP2 1530 aa43.99■■■■■ 4.63
CRNDE-205ENST00000558952 ZCCHC6Q5VYS8 1495 aaKnown RBP43.86■■■■■ 4.61
CRNDE-205ENST00000558952 DCAF1Q9Y4B6 1507 aa43.63■■■■■ 4.58
CRNDE-205ENST00000558952 UNC13AQ9UPW8 1703 aa43.49■■■■■ 4.55
CRNDE-205ENST00000558952 PABPN1Q86U42 306 aaKnown RBP eCLIP43.43■■■■■ 4.54
CRNDE-205ENST00000558952 BICRAQ9NZM4 1560 aa43.19■■■■■ 4.5
CRNDE-205ENST00000558952 DNAJC5BQ9UF47 199 aa43.06■■■■■ 4.48
CRNDE-205ENST00000558952 SCRIBQ14160 1630 aa42.97■■■■■ 4.47
CRNDE-205ENST00000558952 SHROOM4Q9ULL8 1493 aa42.76■■■■■ 4.44
CRNDE-205ENST00000558952 EIF4G1Q04637 1599 aaKnown RBP42.14■■■■■ 4.34
CRNDE-205ENST00000558952 CC2D2AQ9P2K1 1620 aa42.07■■■■■ 4.33
CRNDE-205ENST00000558952 CECR2Q9BXF3 1484 aa41.89■■■■■ 4.3
CRNDE-205ENST00000558952 SMARCA4P51532 1647 aa41.04■■■■■ 4.16
CRNDE-205ENST00000558952 NCAPD3P42695 1498 aa40.97■■■■■ 4.15
CRNDE-205ENST00000558952 BAZ1AQ9NRL2 1556 aaPredicted RBP40.96■■■■■ 4.15
CRNDE-205ENST00000558952 ATAD2BQ9ULI0 1458 aa40.93■■■■■ 4.14
CRNDE-205ENST00000558952 SMARCA2P51531 1590 aa40.9■■■■■ 4.14
CRNDE-205ENST00000558952 HMGXB3Q12766 1538 aa40.75■■■■■ 4.11
CRNDE-205ENST00000558952 MROH2BQ7Z745 1585 aa40.65■■■■■ 4.1
CRNDE-205ENST00000558952 PEG3Q9GZU2 1588 aa40.63■■■■■ 4.09
CRNDE-205ENST00000558952 BAZ1BQ9UIG0 1483 aaKnown RBP40.61■■■■■ 4.09
CRNDE-205ENST00000558952 ERCC6Q03468 1493 aa40.22■■■■■ 4.03
CRNDE-205ENST00000558952 WIZO95785 1651 aa40.19■■■■■ 4.02
CRNDE-205ENST00000558952 NESP48681 1621 aa40.12■■■■■ 4.01
CRNDE-205ENST00000558952 RSF1Q96T23 1441 aaPredicted RBP40.03■■■■■ 4
CRNDE-205ENST00000558952 LAMC3Q9Y6N6 1575 aa39.99■■■■□ 3.99
CRNDE-205ENST00000558952 CUX2O14529 1486 aa39.91■■■■□ 3.98
CRNDE-205ENST00000558952 CADPSQ9ULU8 1353 aa39.78■■■■□ 3.96
CRNDE-205ENST00000558952 PDS5BQ9NTI5 1447 aa39.77■■■■□ 3.96
CRNDE-205ENST00000558952 TOP2AP11388 1531 aaKnown RBP39.76■■■■□ 3.96
CRNDE-205ENST00000558952 KIF21AQ7Z4S6 1674 aa39.64■■■■□ 3.94
CRNDE-205ENST00000558952 THOC2Q8NI27 1593 aaKnown RBP39.61■■■■□ 3.93
CRNDE-205ENST00000558952 CFTRP13569 1480 aa39.43■■■■□ 3.9
CRNDE-205ENST00000558952 MRC2Q9UBG0 1479 aa39.37■■■■□ 3.89
CRNDE-205ENST00000558952 CEP164Q9UPV0 1460 aa39.35■■■■□ 3.89
CRNDE-205ENST00000558952 FANCD2Q9BXW9 1451 aa39.33■■■■□ 3.89
CRNDE-205ENST00000558952 CCDC88BA6NC98 1476 aa39.29■■■■□ 3.88
CRNDE-205ENST00000558952 WDR62O43379 1518 aa39.23■■■■□ 3.87
CRNDE-205ENST00000558952 DNAJC5Q9H3Z4 198 aa39.18■■■■□ 3.86
CRNDE-205ENST00000558952 PRDM2Q13029 1718 aa39.09■■■■□ 3.85
CRNDE-205ENST00000558952 URB2Q14146 1524 aaKnown RBP38.94■■■■□ 3.82
CRNDE-205ENST00000558952 SUPT5HO00267 1087 aaKnown RBP38.76■■■■□ 3.8
CRNDE-205ENST00000558952 ABCC8Q09428 1581 aa38.65■■■■□ 3.78
CRNDE-205ENST00000558952 TOPBP1Q92547 1522 aa38.64■■■■□ 3.78
CRNDE-205ENST00000558952 DNMBPQ6XZF7 1577 aa38.57■■■■□ 3.76
CRNDE-205ENST00000558952 IFT140Q96RY7 1462 aa38.53■■■■□ 3.76
CRNDE-205ENST00000558952 ZNF608Q9ULD9 1512 aaPredicted RBP38.36■■■■□ 3.73
CRNDE-205ENST00000558952 POLA1P09884 1462 aaPredicted RBP38.28■■■■□ 3.72
CRNDE-205ENST00000558952 TARBP1Q13395 1621 aaKnown RBP38.23■■■■□ 3.71
CRNDE-205ENST00000558952 EIF4G3O43432 1585 aaKnown RBP38.21■■■■□ 3.71
CRNDE-205ENST00000558952 OSCARQ8IYS5 282 aa38.19■■■■□ 3.7
CRNDE-205ENST00000558952 CUX1P39880 1505 aa38.17■■■■□ 3.7
CRNDE-205ENST00000558952 SOGA1O94964 1423 aa38.14■■■■□ 3.7
CRNDE-205ENST00000558952 FGD5Q6ZNL6 1462 aa38.14■■■■□ 3.7
CRNDE-205ENST00000558952 RAD54L2Q9Y4B4 1467 aa38.12■■■■□ 3.69
CRNDE-205ENST00000558952 AQRO60306 1485 aaKnown RBP eCLIP38.1■■■■□ 3.692e-8■■■■□ 22.7
CRNDE-205ENST00000558952 TDRD9Q8NDG6 1382 aaKnown RBP37.97■■■■□ 3.67
CRNDE-205ENST00000558952 WDR97A6NE52 1622 aa37.94■■■■□ 3.66
CRNDE-205ENST00000558952 FBLN2P98095 1184 aa37.81■■■■□ 3.64
CRNDE-205ENST00000558952 WRNQ14191 1432 aaPredicted RBP eCLIP37.79■■■■□ 3.64
CRNDE-205ENST00000558952 CHD1O14646 1710 aa37.79■■■■□ 3.64
CRNDE-205ENST00000558952 TRIM41Q8WV44 630 aa37.77■■■■□ 3.64
CRNDE-205ENST00000558952 GRIN2BQ13224 1484 aa37.76■■■■□ 3.63
CRNDE-205ENST00000558952 SNAPC4Q5SXM2 1469 aa37.76■■■■□ 3.63
CRNDE-205ENST00000558952 TOP2BQ02880 1626 aa37.73■■■■□ 3.63
CRNDE-205ENST00000558952 ABCA10Q8WWZ4 1543 aa37.73■■■■□ 3.63
CRNDE-205ENST00000558952 BIVM-ERCC5R4GMW8 1640 aa37.72■■■■□ 3.63
CRNDE-205ENST00000558952 MAGI1Q96QZ7 1491 aaPredicted RBP37.7■■■■□ 3.63
CRNDE-205ENST00000558952 GAPVD1Q14C86 1478 aa37.69■■■■□ 3.62
CRNDE-205ENST00000558952 SYNJ1O43426 1573 aa37.68■■■■□ 3.62
CRNDE-205ENST00000558952 CHMP7Q8WUX9 453 aaPredicted RBP37.62■■■■□ 3.61
CRNDE-205ENST00000558952 PBRM1Q86U86 1689 aa37.62■■■■□ 3.61
CRNDE-205ENST00000558952 ABCA5Q8WWZ7 1642 aa37.61■■■■□ 3.61
CRNDE-205ENST00000558952 RIMBP3CA6NJZ7 1639 aa37.59■■■■□ 3.61
CRNDE-205ENST00000558952 RIMBP3BA6NNM3 1639 aa37.59■■■■□ 3.61
CRNDE-205ENST00000558952 RIMBP3Q9UFD9 1639 aa37.59■■■■□ 3.61
CRNDE-205ENST00000558952 SYNJ2O15056 1496 aa37.56■■■■□ 3.6
CRNDE-205ENST00000558952 ARHGEF11O15085 1522 aa37.55■■■■□ 3.6
CRNDE-205ENST00000558952 CLASP1Q7Z460 1538 aa37.37■■■■□ 3.57
CRNDE-205ENST00000558952 ADAMTS12P58397 1594 aa37.29■■■■□ 3.56
CRNDE-205ENST00000558952 ERICH3Q5RHP9 1530 aa37.29■■■■□ 3.56
CRNDE-205ENST00000558952 CYB5RLQ6IPT4 315 aa37.26■■■■□ 3.56
CRNDE-205ENST00000558952 GRIN2AQ12879 1464 aa37.25■■■■□ 3.55
CRNDE-205ENST00000558952 FHAD1B1AJZ9 1412 aa37.24■■■■□ 3.55
CRNDE-205ENST00000558952 ARAP1Q96P48 1450 aa37.2■■■■□ 3.54
CRNDE-205ENST00000558952 NUP160Q12769 1436 aa37.09■■■■□ 3.53
CRNDE-205ENST00000558952 CEP170Q5SW79 1584 aa37.07■■■■□ 3.52
CRNDE-205ENST00000558952 KIF27Q86VH2 1401 aa37.06■■■■□ 3.52
CRNDE-205ENST00000558952 IGF1RP08069 1367 aa36.91■■■■□ 3.5
CRNDE-205ENST00000558952 CUL7Q14999 1698 aa36.87■■■■□ 3.49
CRNDE-205ENST00000558952 SHROOM2Q13796 1616 aa36.84■■■■□ 3.49
CRNDE-205ENST00000558952 ERCC6L2Q5T890 1561 aa36.8■■■■□ 3.48
CRNDE-205ENST00000558952 RUSC2Q8N2Y8 1516 aa36.76■■■■□ 3.48
CRNDE-205ENST00000558952 JPH4Q96JJ6 628 aa36.73■■■■□ 3.47
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms